##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527701_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1336050 Sequences flagged as poor quality 0 Sequence length 52 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.96269525841099 33.0 31.0 34.0 30.0 34.0 2 32.121062834474756 33.0 31.0 34.0 30.0 34.0 3 32.56744133827327 34.0 31.0 34.0 31.0 34.0 4 35.83446353055649 37.0 35.0 37.0 35.0 37.0 5 36.022856180532166 37.0 35.0 37.0 35.0 37.0 6 35.56451105871786 37.0 35.0 37.0 33.0 37.0 7 36.362652595337 37.0 35.0 37.0 35.0 37.0 8 36.601030650050525 37.0 37.0 37.0 35.0 37.0 9 38.647545376295795 39.0 39.0 39.0 38.0 39.0 10 37.91416339208862 39.0 38.0 39.0 35.0 39.0 11 37.553221810560984 39.0 37.0 39.0 35.0 39.0 12 37.25039556902811 39.0 37.0 39.0 34.0 39.0 13 37.19550241383182 39.0 37.0 39.0 34.0 39.0 14 37.955384154784625 40.0 38.0 40.0 34.0 40.0 15 38.07069570749598 40.0 38.0 40.0 34.0 40.0 16 38.08134276411811 40.0 38.0 40.0 34.0 40.0 17 38.057269563264846 40.0 38.0 40.0 34.0 40.0 18 38.031791474869955 40.0 38.0 40.0 34.0 40.0 19 38.0210313985255 40.0 38.0 40.0 34.0 40.0 20 37.988546835822014 40.0 38.0 40.0 34.0 40.0 21 37.94944350885071 40.0 38.0 40.0 34.0 40.0 22 37.935717226151716 40.0 38.0 40.0 34.0 40.0 23 37.86892406721305 40.0 37.0 40.0 34.0 40.0 24 37.732024250589426 40.0 37.0 40.0 34.0 40.0 25 37.50691441188578 40.0 36.0 40.0 33.0 40.0 26 37.312888739193895 40.0 36.0 40.0 33.0 40.0 27 37.146089592455375 39.0 35.0 40.0 33.0 40.0 28 37.03783241645148 39.0 35.0 40.0 32.0 40.0 29 36.865819392986786 39.0 35.0 40.0 32.0 40.0 30 36.6790105160735 39.0 35.0 40.0 31.0 40.0 31 36.54054189588713 39.0 35.0 40.0 31.0 40.0 32 36.35838104861345 39.0 35.0 40.0 31.0 40.0 33 36.16304479622769 38.0 35.0 40.0 30.0 40.0 34 35.94922645110587 38.0 35.0 40.0 30.0 40.0 35 35.79020770180757 38.0 35.0 40.0 29.0 40.0 36 35.5966692863291 38.0 35.0 40.0 28.0 40.0 37 35.24807379963325 38.0 35.0 40.0 26.0 40.0 38 35.01588563302272 38.0 34.0 40.0 26.0 40.0 39 34.72148272893978 38.0 34.0 40.0 24.0 40.0 40 34.39199805396505 38.0 34.0 40.0 23.0 40.0 41 34.15455708992927 37.0 33.0 40.0 22.0 40.0 42 33.976510609632875 37.0 33.0 40.0 22.0 40.0 43 33.758600351783244 37.0 33.0 40.0 21.0 40.0 44 33.53978818158003 36.0 33.0 40.0 21.0 40.0 45 33.35292316904307 36.0 33.0 40.0 20.0 40.0 46 33.168876913289175 35.0 33.0 39.0 20.0 40.0 47 32.91916320496988 35.0 32.0 39.0 20.0 40.0 48 32.711379813629726 35.0 32.0 39.0 18.0 40.0 49 32.94784551476367 35.0 33.0 39.0 20.0 40.0 50 32.905249055050334 35.0 33.0 39.0 18.0 40.0 51 32.80197073462819 35.0 33.0 39.0 18.0 40.0 52 32.277446203360654 35.0 32.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 0.0 13 3.0 14 4.0 15 22.0 16 59.0 17 149.0 18 360.0 19 805.0 20 1499.0 21 2554.0 22 4227.0 23 6698.0 24 9751.0 25 13045.0 26 17599.0 27 23558.0 28 28171.0 29 29885.0 30 30011.0 31 33560.0 32 41885.0 33 53152.0 34 84419.0 35 100088.0 36 150080.0 37 228941.0 38 348668.0 39 126853.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 99.1298229856667 0.6048426331349874 0.20927360502975187 0.056060776168556564 8 98.5135286853037 1.0706186145728078 0.18075670820702816 0.23509599191647018 9 97.30406796152839 1.514164889038584 0.6167433853523446 0.5650237640806857 10 58.706485535720965 26.34145428689046 5.791624564948917 9.160435612439654 11 31.596796527076084 30.003517832416453 18.05972830358145 20.339957336926012 12 28.445642004416 22.313611017551736 26.16743385352345 23.07331312450881 13 23.125032745780473 23.00385464615845 27.65757269563265 26.21353991242843 14 23.057969387373227 25.43452715092998 30.50589424048501 21.00160922121178 15 25.695220987238503 23.09374649152352 28.1368212267505 23.074211294487483 16 26.818981325549196 24.81793346057408 24.818981325549196 23.544103888327534 17 29.738407993712812 24.548332771977098 21.756146850791513 23.95711238351858 18 27.170839414692566 25.33580330077467 22.31503312001796 25.178324164514805 19 28.980053141723737 25.665731072938886 21.394334044384568 23.95988174095281 20 26.52483065753527 27.11874555592979 22.3439242543318 24.012499532203137 21 26.57116125893492 25.836158826391227 24.852213614759926 22.740466299913926 22 27.50480895176079 24.552449384379326 23.443434003218442 24.499307660641442 23 27.247558100370494 26.527824557464168 21.662138393024215 24.562478949141127 24 28.086673402941507 26.080461060589048 21.911455409602933 23.921410126866512 25 27.325249803525313 26.82549305789454 20.384566445866547 25.4646906927136 26 28.719958085400993 25.65001309831219 20.755660342053066 24.874368474233748 27 26.652894726993747 25.15212754013697 21.491860334568315 26.703117398300964 28 28.787395681299355 26.501927323079226 19.757494105759516 24.953182889861907 29 30.045881516410315 26.332921672093114 20.336888589498898 23.28430822199768 30 28.5761011938176 25.74222521612215 21.431757793495755 24.2499157965645 31 29.736087721267918 27.00437857864601 19.39822611429213 23.861307585793945 32 31.102279106320875 25.115003181018675 20.521761910108154 23.2609558025523 33 30.900639946109802 25.084016316754614 20.601624190711426 23.41371954642416 34 27.922457991841622 28.21690804984843 22.28112720332323 21.579506754986717 35 29.414842258897494 28.38995546573856 21.62359193143969 20.571610343924256 36 29.57935705999027 28.18277759065903 20.8842483439991 21.353617005351598 37 28.973092324389054 28.06264735601213 21.205269263874854 21.75899105572396 38 30.680663148834252 26.801766400958048 20.245350099172935 22.272220351034765 39 28.80498484338161 25.870813218068182 19.473747239998502 25.8504546985517 40 29.057969387373227 26.557688709254894 20.86740765689907 23.51693424647281 41 27.788930055012912 26.448561056846675 21.863478163242394 23.899030724898022 42 26.16743385352345 26.331948654616223 22.278357845889 25.222259645971334 43 28.53358781482729 25.185434676845926 22.328430822199767 23.952546686127015 44 27.289846936866134 25.27607499719322 21.40196848920325 26.0321095767374 45 27.03970659780697 25.65547696568242 22.12050447213802 25.18431196437259 46 26.758429699487294 26.92369297556229 20.886942853935107 25.430934471015306 47 25.78698402005913 26.890909771340894 23.242543317989597 24.079562890610383 48 26.10822948242955 27.357284532764492 22.44174993450844 24.09273605029752 49 27.44231129074511 27.673964297743346 21.321208038621307 23.562516372890236 50 24.720706560383217 28.170652295947008 22.16608659855544 24.94255454511433 51 24.815313798136298 29.0224168257176 22.25500542644362 23.907263949702482 52 26.383817970884323 27.679802402604693 22.439953594551103 23.49642603195988 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 38.0 4 76.0 5 110.5 6 145.0 7 177.5 8 210.0 9 2610.5 10 5011.0 11 4715.5 12 4420.0 13 4510.5 14 4385.5 15 4170.0 16 4194.5 17 4219.0 18 4573.0 19 4927.0 20 5414.5 21 5902.0 22 7429.5 23 8957.0 24 10759.5 25 12562.0 26 13868.0 27 15174.0 28 16592.5 29 18011.0 30 19874.0 31 21737.0 32 22039.5 33 22342.0 34 24675.0 35 27008.0 36 27028.0 37 27048.0 38 29043.0 39 32714.0 40 34390.0 41 36911.5 42 39433.0 43 41243.0 44 43053.0 45 47229.5 46 51406.0 47 50650.5 48 49895.0 49 53453.0 50 57011.0 51 65258.5 52 73506.0 53 77617.5 54 81729.0 55 90655.5 56 99582.0 57 101080.0 58 102578.0 59 100768.5 60 98959.0 61 97518.5 62 96078.0 63 86194.0 64 71449.0 65 66588.0 66 58697.0 67 50806.0 68 43304.5 69 35803.0 70 32086.5 71 28370.0 72 22862.5 73 17355.0 74 12745.0 75 8135.0 76 6293.5 77 4452.0 78 3189.5 79 1927.0 80 1439.0 81 951.0 82 536.5 83 122.0 84 75.5 85 29.0 86 23.5 87 18.0 88 12.0 89 3.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1336050.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.40072805677837 #Duplication Level Percentage of deduplicated Percentage of total 1 76.89894458958884 12.611986780671147 2 8.648667217416717 2.836888781728513 3 3.6024306131257964 1.7724745448786863 4 1.8196846189533706 1.1937661033822642 5 1.0612718411901358 0.8702815430837951 6 0.6376242535273888 0.6274501190705406 7 0.4666394732379248 0.5357258970793459 8 0.3574595187677673 0.4690077086893612 9 0.296999885089637 0.4383912913424605 >10 3.0634028954345345 13.179407563619877 >50 1.9726134974023535 23.104433685385978 >100 1.110849645262914 31.67936375735456 >500 0.045620108635027266 5.135440901200136 >1k 0.017335641281310363 4.973006030845874 >5k 4.562010863502727E-4 0.5723752916674831 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TAGAGAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 7650 0.5725833614011452 No Hit TAGAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 4733 0.3542532090864863 No Hit TAGAGAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGAT 4567 0.3418285243815726 No Hit TAGAGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3727 0.2789566258747801 No Hit TAGAGAGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAA 2910 0.2178062198271023 No Hit TAGAGAGGGGCTCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACA 2672 0.19999251525017778 No Hit TAGAGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 2624 0.1963998353355039 No Hit TAGAGAGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTAGAGAGGGAAG 2606 0.19505258036750123 No Hit TAGAGAGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCAT 2453 0.1836009131394783 No Hit TAGAGAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 2280 0.17065229594700798 No Hit TAGAGAGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC 1978 0.14804835148385165 No Hit TAGAGAGGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGGA 1875 0.14033905916694733 No Hit TAGAGAGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAAGA 1841 0.13779424422738668 No Hit TAGAGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1784 0.1335279368287115 No Hit TAGAGAGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCG 1652 0.12364806706335842 No Hit TAGAGAAGGGGAGTTTTCCTGCAAGTTGAGTAGCGCCAAGGCCGCTGCAGAA 1580 0.11825904719134762 No Hit TAGAGAGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCGC 1452 0.10867856741888403 No Hit TAGAGAGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 1421 0.10635829497399049 Illumina Single End Adapter 2 (100% over 34bp) TAGAGAGGGGCTTTTCCCCTGCCGCCGCCGACTTGCGCGGAGGCGGAAGCTC 1418 0.10613375247932337 No Hit TAGAGAGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 1367 0.10231653006998241 Illumina Single End Adapter 2 (100% over 34bp) >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.09782568017664009 0.0 0.0 0.0 0.0 5 0.09782568017664009 0.0 0.0 0.0 0.0 6 0.2854683582201265 0.0 0.0 0.0 0.0 7 0.2886119531454661 0.0 0.0 0.0 0.0 8 0.3845664458665469 0.0 0.0 0.0 0.0 9 0.5322405598592868 0.0 0.0 0.0 0.0 10 0.6906178660978257 0.0 0.0 0.0 0.0 11 0.9543804498334643 0.0 0.0 0.0 0.0 12 1.0364881553834062 0.0 0.0 0.0 0.0 13 1.1047490737622094 0.0 0.0 0.0 0.0 14 1.1745069421054601 0.0 0.0 0.0 0.0 15 1.2495041353242768 0.0 0.0 0.0 0.0 16 1.313947831293739 0.0 0.0 0.0 0.0 17 1.3712061674338536 0.0 0.0 0.0 0.0 18 1.4283896560757456 0.0 0.0 0.0 0.0 19 1.4955278619812133 0.0 0.0 0.0 0.0 20 1.560270947943565 0.0 0.0 0.0 0.0 21 1.6179035215747914 0.0 0.0 0.0 0.0 22 1.685415964971371 0.0 0.0 0.0 0.0 23 1.7563713932861793 0.0 0.0 0.0 0.0 24 1.8312188915085512 0.0 0.0 0.0 0.0 25 1.9067400172149247 0.0 0.0 0.0 0.0 26 1.98547958534486 0.0 0.0 0.0 0.0 27 2.051569926275214 0.0 0.0 0.0 0.0 28 2.128588001946035 0.0 0.0 0.0 0.0 29 2.17671494330302 0.0 0.0 0.0 0.0 30 2.2365929418809176 0.0 0.0 0.0 0.0 31 2.2779836083978893 0.0 0.0 0.0 0.0 32 2.324838142285094 0.0 0.0 0.0 0.0 33 2.3675760637700685 0.0 0.0 0.0 0.0 34 2.4118109352194903 0.0 0.0 0.0 0.0 35 2.476628868680064 0.0 0.0 0.0 0.0 36 2.518094382695258 0.0 0.0 0.0 0.0 37 2.5619550166535685 0.0 0.0 0.0 0.0 38 2.607836533063882 0.0 0.0 0.0 0.0 39 2.652071404513304 0.0 0.0 0.0 0.0 40 2.694734478500056 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAT 25 3.4174554E-5 46.0 38 AACGTTG 20 6.311825E-4 46.0 38 AACGTCG 25 3.4174554E-5 46.0 17 AACGTAC 25 3.4174554E-5 46.0 44 CGAAATC 20 6.311825E-4 46.0 20 TAGGTTA 20 6.311825E-4 46.0 20 GTTAGCA 20 6.311825E-4 46.0 32 TAACGGC 30 1.861632E-6 46.0 24 GCGTTAG 45 3.110472E-10 46.0 23 TCGATAT 30 1.861632E-6 46.0 20 AGTATCG 20 6.311825E-4 46.0 17 TTATACG 20 6.311825E-4 46.0 31 TACGCTA 30 1.861632E-6 46.0 45 TGTTACG 20 6.311825E-4 46.0 15 CGTACGC 40 5.6134013E-9 46.0 43 CGATGTA 25 3.4174554E-5 46.0 27 CACGTTA 20 6.311825E-4 46.0 42 CGACTTA 55 1.8189894E-12 46.0 21 TATACGC 20 6.311825E-4 46.0 32 TAAGCGC 20 6.311825E-4 46.0 38 >>END_MODULE