##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527690_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1793418 Sequences flagged as poor quality 0 Sequence length 50 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.95059991591475 33.0 31.0 34.0 3.0 34.0 2 30.47777930186939 34.0 31.0 34.0 16.0 34.0 3 32.29583343091237 34.0 31.0 34.0 28.0 34.0 4 36.31851916284993 37.0 35.0 37.0 35.0 37.0 5 36.338837348571275 37.0 37.0 37.0 35.0 37.0 6 36.42237280990823 37.0 37.0 37.0 35.0 37.0 7 36.59670863122819 37.0 37.0 37.0 35.0 37.0 8 36.70828663479457 37.0 37.0 37.0 35.0 37.0 9 38.781774800966645 39.0 39.0 39.0 39.0 39.0 10 38.37446986703602 39.0 39.0 39.0 37.0 39.0 11 38.192402440479576 39.0 39.0 39.0 37.0 39.0 12 37.52580714590798 39.0 37.0 39.0 35.0 39.0 13 37.391434121883464 39.0 37.0 39.0 35.0 39.0 14 38.11830538112141 40.0 38.0 40.0 35.0 40.0 15 38.134669106700166 40.0 37.0 40.0 35.0 40.0 16 38.17267363213707 40.0 37.0 40.0 35.0 40.0 17 38.02841166978362 40.0 37.0 40.0 34.0 40.0 18 37.98490368670327 40.0 37.0 40.0 34.0 40.0 19 37.9582495547608 40.0 37.0 40.0 34.0 40.0 20 37.89195212716723 40.0 37.0 40.0 34.0 40.0 21 37.88748412249682 40.0 37.0 40.0 34.0 40.0 22 37.938149946080614 40.0 37.0 40.0 34.0 40.0 23 37.91186996004278 40.0 37.0 40.0 34.0 40.0 24 37.90388966766253 40.0 37.0 40.0 34.0 40.0 25 37.897819694014444 40.0 36.0 40.0 34.0 40.0 26 37.78722584472778 40.0 36.0 40.0 34.0 40.0 27 37.72034071253885 40.0 36.0 40.0 34.0 40.0 28 37.54978147871829 40.0 35.0 40.0 34.0 40.0 29 37.54142871321689 40.0 35.0 40.0 34.0 40.0 30 37.67574486260314 40.0 36.0 40.0 34.0 40.0 31 37.71852518487045 40.0 36.0 40.0 34.0 40.0 32 37.69295724699986 40.0 35.0 40.0 34.0 40.0 33 37.596423700442394 40.0 35.0 40.0 34.0 40.0 34 37.197155375935786 40.0 35.0 40.0 33.0 40.0 35 37.18021788562399 40.0 35.0 40.0 33.0 40.0 36 37.24016431194512 40.0 35.0 40.0 33.0 40.0 37 37.247431998563634 40.0 35.0 40.0 33.0 40.0 38 37.2115374106873 40.0 35.0 40.0 33.0 40.0 39 37.13547817630915 40.0 35.0 40.0 33.0 40.0 40 36.96901112847089 39.0 35.0 40.0 33.0 40.0 41 36.85568172060278 39.0 35.0 40.0 33.0 40.0 42 36.79186726128543 39.0 35.0 40.0 33.0 40.0 43 36.68618303150743 39.0 35.0 40.0 33.0 40.0 44 36.33624397658549 39.0 35.0 40.0 32.0 40.0 45 36.34680035552225 38.0 35.0 40.0 32.0 40.0 46 36.15390778948355 38.0 35.0 40.0 31.0 40.0 47 36.139408102294055 38.0 35.0 40.0 31.0 40.0 48 36.08456199279811 38.0 35.0 40.0 31.0 40.0 49 35.974437638074335 37.0 35.0 40.0 31.0 40.0 50 35.53828499546675 37.0 35.0 40.0 30.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 2.0 15 16.0 16 43.0 17 117.0 18 210.0 19 424.0 20 689.0 21 1101.0 22 1516.0 23 2238.0 24 3576.0 25 5060.0 26 6583.0 27 8867.0 28 11672.0 29 15367.0 30 20487.0 31 28321.0 32 39042.0 33 65209.0 34 129655.0 35 174075.0 36 139439.0 37 299067.0 38 483930.0 39 356707.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 0.0 0.0 100.0 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 99.28438322800373 0.624003996837324 0.054644260289569965 0.03696851486937234 8 99.41625432553927 0.4778584802873619 0.06228330484025475 0.043603889333105834 9 98.76743737377454 0.7639044550684781 0.1883554196511912 0.28030275150578393 10 62.69402894361493 29.063609264544016 2.854437727289455 5.387924064551599 11 40.383279302426985 23.216004300168727 20.40232673029935 15.998389667104936 12 37.06821276467617 14.993492872269599 24.223521789119992 23.714772573934244 13 27.241390462234683 15.885476782322916 27.595239927334287 29.277892828108115 14 25.92106246285027 17.67909098715414 30.136699865842765 26.263146684152833 15 27.786439078898507 18.51592880187441 28.43430812002556 25.263323999201525 16 34.08998905999605 19.812949351461846 24.35773478352509 21.73932680501701 17 33.81041118133085 19.775534760998273 23.19063375074857 23.223420306922314 18 31.473253864966228 20.431544681719487 23.406311300544548 24.688890152769737 19 30.063487708944596 23.061216068981132 22.385300024868716 24.48999619720556 20 30.91320595644741 24.259486633902412 21.475250053250274 23.352057356399904 21 30.81339654224503 23.820157933064127 23.536007779558364 21.83043774513248 22 29.316701404803563 21.69299070266943 25.10714178178205 23.88316611074496 23 30.577980147405682 21.136845955599863 25.06164207117359 23.22353182582086 24 32.410458688381624 20.358388284270593 22.618597560635614 24.612555466712166 25 29.92397756685837 20.51038854299444 21.310480880642437 28.255153009504756 26 26.840256984149818 21.2202063322661 23.589035015818958 28.350501667765126 27 24.9900469383044 19.75250610844767 24.368830913930832 30.888616039317103 28 26.842320083772996 22.821004361504123 21.64286295777114 28.69381259695174 29 30.952293330389235 22.740878032895846 21.15658480064324 25.150243836071677 30 29.76930085456932 20.22411953041622 23.896994454165174 26.109585160849285 31 32.03157323055751 20.745972216181617 22.70312888573662 24.519325667524246 32 35.296400504511496 20.208228087372827 21.897237565364016 22.59813384275166 33 34.6551110783989 19.64009505870912 22.717960899243792 22.986832963648183 34 29.70891337100442 21.30490493571493 27.86310832165173 21.123073371628923 35 27.086602231047085 25.569276097373844 27.047180300409607 20.296941371169467 36 26.888879223917684 28.05057159011452 22.862266353967676 22.198282832000125 37 29.903904165119343 27.804839697159277 19.788080637085166 22.503175500636218 38 30.720668578100586 26.375167417746447 20.916317333716957 21.987846670436006 39 31.351419468300197 24.560308862741426 20.823812407369616 23.264459261588765 40 29.052903450283203 22.906706635039907 20.23839394943064 27.801995965246252 41 25.5185907579828 24.829013648797993 22.100146201276 27.552249391943207 42 24.18159068326514 23.67496032715184 22.34699328321674 29.79645570636628 43 24.33035689393103 21.14833240215053 23.79601409152802 30.72529661239042 44 25.204665058564153 20.363016318560426 23.86889169173054 30.56342693114489 45 28.15606846814295 21.116103440469537 23.41528857187783 27.31253951950967 46 27.370975422349947 24.822099477087882 22.189807395710314 25.617117704851854 47 25.009785783347777 22.5289363662013 24.443325538162323 28.017952312288603 48 26.159880184095396 21.357820653076974 26.47140822719522 26.010890935632407 49 28.898003700197055 19.94693930806984 24.936071791406132 26.218985200326973 50 25.962603252560196 21.07277834838281 25.31300566850561 27.651612730551385 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 22.0 4 44.0 5 30.5 6 17.0 7 23.5 8 30.0 9 178.5 10 327.0 11 834.5 12 1342.0 13 2119.0 14 2896.0 15 2491.0 16 2086.0 17 2159.0 18 2232.0 19 2745.0 20 3258.0 21 3200.5 22 3143.0 23 3803.0 24 4463.0 25 5656.5 26 6850.0 27 7590.5 28 8331.0 29 11352.0 30 14373.0 31 15848.0 32 17323.0 33 20789.5 34 24256.0 35 25659.0 36 27062.0 37 30239.0 38 33416.0 39 37474.0 40 41532.0 41 45352.0 42 49172.0 43 52190.0 44 55208.0 45 61985.0 46 68762.0 47 70967.5 48 73173.0 49 80901.5 50 88630.0 51 93371.0 52 98112.0 53 104273.5 54 110435.0 55 126445.0 56 142455.0 57 160349.0 58 178243.0 59 183619.5 60 188996.0 61 188121.5 62 187247.0 63 155267.5 64 123288.0 65 102932.0 66 82576.0 67 67418.0 68 52260.0 69 44868.5 70 37477.0 71 31785.5 72 26094.0 73 23627.0 74 21160.0 75 15669.5 76 10179.0 77 7061.0 78 3943.0 79 2991.5 80 2040.0 81 1345.0 82 650.0 83 420.5 84 191.0 85 148.5 86 106.0 87 65.5 88 25.0 89 18.5 90 12.0 91 7.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1793418.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 7.343427316414037 #Duplication Level Percentage of deduplicated Percentage of total 1 63.86374980589772 4.68978804853261 2 9.912714835877471 1.4558660181121066 3 4.154565400093229 0.9152624714061968 4 1.9955171212995133 0.5861573975569101 5 1.162641838163392 0.4268887916787441 6 0.7198069557122594 0.31715100366733406 7 0.533153066617331 0.2740619555259335 8 0.42653550566184895 0.25057859869581567 9 0.3501364896363335 0.2314081676221895 >10 9.25804662510448 20.002025159848696 >50 5.096740691996322 25.953388805439925 >100 2.3906636624585564 30.754183565947635 >500 0.08483000092594876 4.172585115003695 >1k 0.04549972776937252 5.923621105176256 >5k 0.0038559091329976713 1.8000785893798517 >10k+ 0.0015423636531990686 2.2469552064061022 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AACCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 22717 1.266687409181797 No Hit AACCTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 16960 0.945680259705211 No Hit AACCTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 7131 0.39762063278053417 No Hit AACCTAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 6957 0.3879184886066717 No Hit AACCTAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 6386 0.356079843070606 No Hit AACCTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 6077 0.3388501732446089 No Hit AACCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 5235 0.29190071695499875 No Hit AACCTAGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 4455 0.24840834652044308 No Hit AACCTAGGGGGGGCTGGTGAGATGGCTCAGAGGGTAAGAGTACCCCACCT 4080 0.22749855304229133 No Hit AACCTAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 3636 0.20274135756415962 No Hit AACCTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 3130 0.1745270762309735 No Hit AACCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGC 3127 0.17435979788314826 No Hit AACCTAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 2844 0.15857987373830304 No Hit AACCTAGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCT 2841 0.15841259539047786 No Hit AACCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 2679 0.1493795646079163 No Hit AACCTAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 2668 0.1487662106658905 No Hit AACCTAGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCG 2397 0.13365539991234612 No Hit AACCTAGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA 2335 0.13019831405729174 No Hit AACCTAGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC 2195 0.12239199115878172 No Hit AACCTAGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 2135 0.11904642420227744 No Hit AACCTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 2112 0.11776395686895079 No Hit AACCTAGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGC 2101 0.11715060292692502 No Hit AACCTAGGGGGGCTGGTGAGATGGCTCAGCAGGCAAGAGCACCCGACTGC 1991 0.11101706350666715 No Hit AACCTAGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACA 1905 0.106221750869011 No Hit AACCTAGGGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGC 1884 0.10505080243423451 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.033176872318667484 0.0 0.0 0.0 0.0 7 0.036578198724446835 0.0 0.0 0.0 0.0 8 0.03747034991284798 0.0 0.0 0.0 0.0 9 0.048733758666412406 0.0 0.0 0.0 0.0 10 0.07979177191262718 0.0 0.0 0.0 0.0 11 0.10538535912988495 0.0 0.0 0.0 0.0 12 0.11257832808636915 0.0 0.0 0.0 0.0 13 0.1201058537385038 0.0 0.0 0.0 0.0 14 0.13398995660799656 0.0 0.0 0.0 0.0 15 0.14714918663691343 0.0 0.0 0.0 0.0 16 0.15997385997017985 0.0 0.0 0.0 0.0 17 0.17067967423099356 0.0 0.0 0.0 0.0 18 0.18066061565123134 0.0 0.0 0.0 0.0028437319130286414 19 0.19264889724537168 0.0 0.0 0.0 0.0028437319130286414 20 0.20597540562211375 0.0 0.0 0.0 0.0028437319130286414 21 0.21840976281045468 0.0 0.0 0.0 0.0028437319130286414 22 0.22844646367996752 0.0 0.0 0.0 0.0028437319130286414 23 0.2395983535349818 0.0 0.0 0.0 0.0028437319130286414 24 0.2519769512740477 0.0 0.0 0.0 0.0028437319130286414 25 0.26234820883921095 0.0 0.0 0.0 0.0028437319130286414 26 0.27461528767972665 0.0 0.0 0.0 0.0028437319130286414 27 0.28610173423039137 0.0 0.0 0.0 0.0028437319130286414 28 0.3039447579984142 0.0 0.0 0.0 0.0028437319130286414 29 0.3138699399693769 0.0 0.0 0.0 0.0028437319130286414 30 0.3266946133026433 0.0 0.0 0.0 0.0028437319130286414 31 0.3362852385779556 0.0 0.0 0.0 0.0028437319130286414 32 0.3472140906358696 0.0 0.0 0.0 0.0028437319130286414 33 0.3579199048966833 0.0 0.0 0.0 0.0028437319130286414 34 0.36817964356329647 0.0 0.0 0.0 0.0028437319130286414 35 0.38496323779509295 0.0 0.0 0.0 0.0028437319130286414 36 0.4023601859689152 0.0 0.0 0.0 0.0028437319130286414 37 0.41652308608478333 0.0 0.0 0.0 0.0028437319130286414 38 0.429515037765875 0.0 0.0 0.0 0.0028437319130286414 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGAC 20 7.8576646E-4 44.0 42 CGCGAAT 25 4.443841E-5 44.0 40 ACGATAG 25 4.443841E-5 44.0 37 TACTCGA 25 4.443841E-5 44.0 44 CCGCGTA 25 4.443841E-5 44.0 41 ACGGTAT 30 2.5285135E-6 44.0 12 TAGGGAT 18290 0.0 42.71296 5 CTAGGGA 53120 0.0 42.587727 4 AACCTAG 184330 0.0 42.536755 1 ACCTAGG 183245 0.0 42.53049 2 CCTAGGG 181190 0.0 42.51018 3 TAGGGGA 27665 0.0 42.4334 5 CTAGGGG 113460 0.0 42.42746 4 TAGGGGG 52555 0.0 42.304634 5 TAGGGAG 17455 0.0 42.285877 5 TAGGGGT 14725 0.0 42.17725 5 TAGGGAA 9260 0.0 42.12311 5 TAGGGGC 18905 0.0 42.079876 5 TAGGGCA 3915 0.0 41.864624 5 AGGGGGG 28400 0.0 41.62183 6 >>END_MODULE