##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527666_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2005331 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.82813161517974 31.0 31.0 34.0 30.0 34.0 2 31.99881864889138 33.0 31.0 34.0 30.0 34.0 3 32.509143876995864 34.0 31.0 34.0 30.0 34.0 4 35.435264801671146 35.0 35.0 37.0 33.0 37.0 5 35.98304070500082 37.0 35.0 37.0 35.0 37.0 6 36.18298924217498 37.0 35.0 37.0 35.0 37.0 7 36.51323995888958 37.0 37.0 37.0 35.0 37.0 8 36.527118964400394 37.0 37.0 37.0 35.0 37.0 9 37.99468317200502 39.0 39.0 39.0 35.0 39.0 10 37.414628308244374 39.0 37.0 39.0 35.0 39.0 11 36.92896634022014 39.0 37.0 39.0 32.0 39.0 12 37.2005943158511 39.0 37.0 39.0 34.0 39.0 13 36.52583139641286 39.0 35.0 39.0 32.0 39.0 14 37.87377395552156 40.0 38.0 40.0 33.0 40.0 15 38.09226456879188 40.0 38.0 40.0 34.0 40.0 16 37.89334478946368 40.0 38.0 40.0 33.0 40.0 17 38.06541164525956 40.0 38.0 40.0 34.0 40.0 18 37.80775941727326 40.0 38.0 40.0 33.0 40.0 19 37.91583933026518 40.0 38.0 40.0 34.0 40.0 20 38.044859427196805 40.0 38.0 40.0 34.0 40.0 21 38.08372533013253 40.0 38.0 40.0 34.0 40.0 22 37.764929081533175 39.0 38.0 40.0 34.0 40.0 23 36.80889987737685 38.0 37.0 40.0 33.0 40.0 24 36.23416383629436 37.0 35.0 40.0 32.0 40.0 25 35.76510012561517 37.0 35.0 39.0 31.0 40.0 26 35.81266783388877 37.0 35.0 40.0 31.0 40.0 27 35.67140038228103 37.0 35.0 40.0 30.0 40.0 28 35.30935092510912 37.0 35.0 40.0 29.0 40.0 29 34.86368335202518 37.0 35.0 40.0 26.0 40.0 30 34.53129184159623 36.0 34.0 40.0 24.0 40.0 31 34.112932977149406 36.0 33.0 40.0 23.0 40.0 32 33.923959685458414 36.0 33.0 40.0 21.0 40.0 33 33.62834614335489 36.0 33.0 40.0 20.0 40.0 34 32.776979959916844 35.0 33.0 39.0 15.0 40.0 35 32.116675501450885 35.0 32.0 39.0 12.0 40.0 36 31.18496098649051 35.0 30.0 39.0 10.0 40.0 37 30.165751190202513 35.0 26.0 37.0 9.0 40.0 38 29.43026562697131 35.0 23.0 37.0 8.0 40.0 39 28.791089850004813 35.0 21.0 36.0 8.0 40.0 40 28.24406394754781 35.0 18.0 35.0 8.0 40.0 41 27.887240061615763 35.0 17.0 35.0 8.0 39.0 42 27.598925065238607 35.0 17.0 35.0 8.0 39.0 43 27.34228214693734 34.0 15.0 35.0 8.0 39.0 44 26.89757950183785 34.0 14.0 35.0 8.0 38.0 45 26.752487245247792 34.0 13.0 35.0 8.0 38.0 46 26.53091085711037 33.0 12.0 35.0 8.0 38.0 47 26.339775827531714 33.0 11.0 35.0 8.0 37.0 48 25.98442950315933 33.0 10.0 35.0 8.0 37.0 49 25.610692199941056 33.0 10.0 35.0 8.0 36.0 50 24.750326504701718 32.0 10.0 35.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 21.0 12 41.0 13 51.0 14 65.0 15 148.0 16 241.0 17 567.0 18 1334.0 19 2998.0 20 5352.0 21 9076.0 22 15210.0 23 25043.0 24 37414.0 25 51116.0 26 69435.0 27 94830.0 28 117541.0 29 110610.0 30 81278.0 31 63580.0 32 69228.0 33 86695.0 34 124821.0 35 175951.0 36 347951.0 37 353364.0 38 137229.0 39 24135.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 98.49815317271812 0.9501174619052914 0.36123712245010925 0.19049224292647945 8 94.85905319371216 3.4699009789406334 0.8346253062462008 0.8364205211010053 9 80.79673629939397 13.825348533483997 3.3480258371311273 2.029889329990909 10 35.566996171704325 47.73785474816876 9.126323783953872 7.568825296173051 11 18.646298291902934 62.23675792175955 12.526261250636427 6.590682535701088 12 40.73641708027254 39.050710331611086 13.356597988062818 6.856274600053558 13 18.134412722887145 40.40749382520891 23.98591554212247 17.47217790978148 14 27.935737292247513 49.778266031891995 8.94685216555272 13.339144510307774 15 21.055177424574794 47.03358198721308 9.214039976442793 22.69720061176933 16 21.232205556090243 54.47594437028101 17.88622426921042 6.405625804418323 17 35.49079927453373 39.840305665249275 16.514530518901868 8.154364541315125 18 22.09400842055501 41.43141456447838 24.33029759176914 12.144279423197467 19 27.157461785610455 38.08942264394257 19.980940802291492 14.772174768155482 20 12.870344097807296 40.70106132104874 24.320024973433313 22.10856960771065 21 12.516088366459202 42.50595038923749 33.9285634142194 11.049397830083912 22 18.726584289576135 44.156650448230245 24.876591445502015 12.240173816691609 23 20.030957482829518 54.57468118729526 17.545831585907763 7.848529743967454 24 27.50189370233642 41.5965743311204 18.742541754952175 12.158990211591005 25 20.189085991290217 37.81425610036448 23.553518097511084 18.44313981083422 26 29.759625717649605 37.22263307154779 11.112828754953672 21.904912455848937 27 37.83355466005362 38.094259750634684 11.4023071502909 12.66987843902079 28 36.07863240532361 43.630851964089715 9.292081955547488 10.998433675039184 29 35.518824573100396 44.98484290124672 10.56364261062139 8.932689915031483 30 25.64334765682074 54.32295217098822 10.893812542667519 9.139887629523505 31 20.177516828892585 57.42787599653124 11.245026382178304 11.149580792397863 32 16.592422896768664 59.21062408151073 14.996626492085346 9.200326529635257 33 19.15354622254381 58.516374603494384 12.80451955313113 9.525559620830675 34 17.10784902841476 58.257714063164634 12.043448188852613 12.590988719567992 35 17.380572085107147 60.77096499281166 12.055665623281143 9.79279729880005 36 20.431589597926727 56.75152879998364 11.675877947331388 11.141003654758242 37 19.705973727030603 54.8677500123421 14.34660911340821 11.079667147219087 38 22.509899861918058 51.90798925464175 13.948270883958807 11.633839999481383 39 21.249359831369485 49.949908518843024 14.647906006539568 14.152825643247924 40 22.445870532096695 48.43449784599151 16.409859519450904 12.709772102460889 41 21.437159252013757 49.0271680834735 16.814481000892123 12.721191663620617 42 21.26691304328313 51.36319141328788 14.761054409471551 12.608841133957435 43 23.59610458323339 49.40900030967456 14.633743756018333 12.361151351073712 44 21.699460089132415 49.799010736880845 15.813050314387 12.688478859599735 45 21.10858506650523 49.196317216459526 14.58487401830421 15.110223698731032 46 22.400491489933582 48.8694385116472 14.845628975964567 13.884441022454647 47 22.498879237392728 48.21548163370536 14.783743930553111 14.501895198348802 48 22.313273968237663 47.7567543712235 15.187617405804826 14.742354254734005 49 21.66909103783864 47.56361917309412 15.54606197181413 15.22122781725311 50 19.78855361035161 47.808167329981934 17.068852972402063 15.334426087264397 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 249.0 6 498.0 7 1350.0 8 2202.0 9 13462.5 10 24723.0 11 33587.5 12 42452.0 13 27513.0 14 12574.0 15 11768.5 16 10963.0 17 12802.0 18 14641.0 19 17673.0 20 20705.0 21 24837.0 22 28969.0 23 34756.5 24 40544.0 25 48405.5 26 56267.0 27 65100.5 28 73934.0 29 81790.5 30 89647.0 31 94953.5 32 100260.0 33 118076.0 34 135892.0 35 165129.0 36 194366.0 37 182199.0 38 170032.0 39 131780.5 40 93529.0 41 84850.0 42 76171.0 43 77131.5 44 78092.0 45 73992.5 46 69893.0 47 66127.0 48 62361.0 49 56306.5 50 50252.0 51 52469.5 52 54687.0 53 66550.0 54 78413.0 55 97738.0 56 117063.0 57 111087.5 58 105112.0 59 97607.5 60 90103.0 61 73146.5 62 56190.0 63 40033.0 64 23876.0 65 17917.0 66 11958.0 67 9684.5 68 7411.0 69 5704.5 70 3998.0 71 3802.0 72 3606.0 73 2855.0 74 2104.0 75 1525.0 76 946.0 77 756.5 78 567.0 79 364.5 80 162.0 81 140.5 82 119.0 83 73.0 84 27.0 85 19.0 86 11.0 87 9.0 88 7.0 89 5.0 90 3.0 91 1.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2005331.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.13289456516397 #Duplication Level Percentage of deduplicated Percentage of total 1 79.27574798446105 26.266349995436585 2 10.016166973620868 6.637292085681154 3 3.601658257049639 3.580000898717337 4 1.7580438776870797 2.329963297613522 5 1.022873476291768 1.6945379521738948 6 0.6966205683969174 1.3848633506771797 7 0.5250099401924043 1.217656929584058 8 0.3805571610316843 1.0087168233984738 9 0.29525476696332964 0.8804380557292255 >10 1.992473631437634 13.024557956925955 >50 0.250983595206775 5.75558838868964 >100 0.15218457255783613 9.673940265250602 >500 0.017283240786063702 4.05305115548941 >1k 0.013000667847924023 8.344382941308172 >5k 6.11796134019954E-4 1.373736989997461 >10k+ 0.0015294903350498853 12.77492291332743 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TAGTCGGGGGAGTGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAAAA 59422 2.9632015861720586 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGGGAAAAAAAAAAAAAAAAAAAAA 34806 1.7356735621201684 No Hit TAGTCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 32923 1.6417738517980323 No Hit TAGTCGGGGAGTGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAAAAA 29822 1.487136038888343 No Hit TAGTCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 20623 1.0284087764064884 No Hit TAGTCGGGGGTGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAAAAAA 19479 0.971360837687145 No Hit TAGTCGGGGAGTGCAGTGCTTAGTCGGGAAAAAAAAAAAAAAAAAAAAAA 17772 0.8862377333218306 No Hit TAGTCGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 13757 0.6860214099318267 Illumina Single End Adapter 2 (97% over 34bp) TAGTCGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTAGTCGGGGA 11969 0.5968590721432023 No Hit TAGTCGGGGGTGCAGTGCTTAGTCGGGAAAAAAAAAAAAAAAAAAAAAAA 11515 0.5742194181409453 No Hit TAGTCGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 7884 0.39315205320218954 Illumina Single End Adapter 2 (97% over 34bp) TAGTCGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 6695 0.33386009591434035 Illumina Single End Adapter 2 (97% over 34bp) TAGTCGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 6432 0.3207450540584073 Illumina Single End Adapter 2 (97% over 34bp) TAGTCGGGGGAGTGCAGTGCTTAGTCGGGGTAAAAAAAAAAAAAAAAAAA 6097 0.3040395824928653 No Hit TAGTCGGGGTGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAAAAAAA 4909 0.24479749228431616 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGGGGGAGTGCAGTGCTTAGTCGGG 4620 0.23038590636657988 No Hit TAGTCGGGGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAAAAAAAAA 4282 0.21353083356313746 No Hit TAGTCGGGGCAGAGTGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAA 3986 0.1987701780903003 No Hit TAGTCGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 3714 0.18520633252066618 Illumina Single End Adapter 2 (100% over 34bp) TAGTCGGGGGAGTGCAGTGCTTAGTCGGGCAAAAAAAAAAAAAAAAAAAA 3676 0.1833113835072614 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGGGATCGGAAGAGCTCGTATGCCG 3437 0.17139315155453141 Illumina Single End Adapter 2 (95% over 23bp) TAGTCGGGGCAGTGCTTAGTCGGGAAAAAAAAAAAAAAAAAAAAAAAAAA 3271 0.16311521639071055 No Hit TAGTCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAAA 3267 0.16291574807351006 Illumina Single End Adapter 2 (96% over 32bp) TAGTCGGGAGTGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAAAAAA 3153 0.15723090103329573 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGGGTAAAAAAAAAAAAAAAAAAAA 3016 0.15039911116917853 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGGGGGAAAAAAAAAAAAAAAAAAA 2915 0.14536253615986588 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGGAAGAGCTCGTATGCCGTCTTCT 2867 0.14296891635345985 Illumina Single End Adapter 2 (96% over 27bp) TAGTCGGGGGAGTGCAGTGCTTAGTCGGGGCAAAAAAAAAAAAAAAAAAA 2814 0.1403259611505532 No Hit TAGTCGGGGTGCAGTGCTTAGTCGGGAAAAAAAAAAAAAAAAAAAAAAAA 2797 0.13947822080245106 No Hit TAGTCGGGGCAGAGTGCAGTGCTTAGTCGGGAAAAAAAAAAAAAAAAAAA 2738 0.13653606312374367 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGAAAAAAAAAAAAAAAAAAAAAAA 2701 0.13469098118963901 No Hit TAGTCGGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA 2631 0.13120028563863023 Illumina Single End Adapter 2 (100% over 34bp) TAGTCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2499 0.12461783117101366 No Hit TAGTCGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 2483 0.12381995790221166 Illumina Single End Adapter 2 (97% over 34bp) TAGTCGGGGAGTGCAGTGCTTAGTCGGGGTAAAAAAAAAAAAAAAAAAAA 2476 0.12347088834711079 No Hit TAGTCGGGAGAGTGCAGTGCTTAGTCGGGGAAAAAAAAAAAAAAAAAAAA 2293 0.11434521283518781 No Hit TAGTCGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2118 0.10561847395766583 No Hit TAGTCGGGGGAGTGCAGTGCTTAGTCGGAAAAAAAAAAAAAAAAAAAAAA 2108 0.1051198031646646 No Hit TAGTCGGGGGAGTGCAGTGCTTGATCGGAAGAGCTCGTATGCCGTCTTCT 2075 0.10347418954776044 Illumina Single End Adapter 2 (96% over 29bp) TAGTCGGGGAAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCG 2060 0.10272618335825856 Illumina Single End Adapter 2 (100% over 23bp) TAGTCGGGGAAAAAAAAAAAAAGATCGGAAGAGCTCGTATGCCGTCTTCT 2059 0.10267631627895843 Illumina Single End Adapter 2 (100% over 29bp) TAGTCGGGGGAGTGCAGTGCTTAGTCGGATCGGAAGAGCTCGTATGCCGT 2049 0.10217764548595717 Illumina Single End Adapter 2 (95% over 24bp) TAGTCGGGGGAGTGCAGTGCTTAGTCGGCAAAAAAAAAAAAAAAAAAAAA 2017 0.10058189894835316 No Hit TAGTCGGGGAAAAAAAAAAAAGATCGGAAGAGCTCGTATGCCGTCTTCTG 2009 0.10018296231395216 Illumina Single End Adapter 2 (100% over 30bp) >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.09250343210173283 0.0 0.0 0.0 0.0 8 0.14232064432255823 0.0 0.0 0.0 0.0 9 0.24609403634611943 0.0 0.0 0.0 0.0 10 0.5339268180664439 0.0 0.0 0.0 0.0 11 0.9114704754476942 0.0 0.0 0.0 0.0 12 1.0979234849508634 0.0 0.0 0.0 0.0 13 1.2324149978233019 0.0 0.0 0.0 0.0 14 1.499403340396174 0.0 0.0 0.0 0.0 15 1.7510326225446073 0.0 0.0 0.0 0.0 16 2.040112081247435 0.0 0.0 0.0 0.0 17 2.2242712051027986 0.0 0.0 0.0 0.0 18 2.4248864651272033 0.0 0.0 0.0 0.0 19 2.6395642415142437 0.0 0.0 0.0 0.0 20 2.8710472236254265 0.0 0.0 0.0 0.0 21 3.1208812909190553 0.0 0.0 0.0 0.0 22 3.403228693916366 0.0 0.0 0.0 0.0 23 3.715446477414452 0.0 0.0 0.0 0.0 24 3.999240025711466 0.0 0.0 0.0 0.0 25 4.250520238304799 0.0 0.0 0.0 0.0 26 4.527132927182595 0.0 0.0 0.0 0.0 27 4.756272156566672 0.0 0.0 0.0 0.0 28 5.075720666563275 0.0 0.0 0.0 0.0 29 5.26810785850316 0.0 0.0 0.0 0.0 30 5.498294296552539 0.0 0.0 0.0 0.0 31 5.687789197893016 0.0 0.0 0.0 9.973415860025103E-5 32 5.875788086854489 0.0 0.0 0.0 9.973415860025103E-5 33 6.042393998796209 0.0 0.0 0.0 9.973415860025103E-5 34 6.2119420684166355 0.0 0.0 0.0 9.973415860025103E-5 35 6.467261514433278 0.0 0.0 0.0 9.973415860025103E-5 36 6.645935259565628 0.0 0.0 0.0 9.973415860025103E-5 37 6.8475977282553355 0.0 0.0 0.0 9.973415860025103E-5 38 7.051155145958448 0.0 0.0 0.0 1.4960123790037656E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATAC 20 7.857886E-4 44.0 21 ACCGGTG 20 7.857886E-4 44.0 42 TAGCGTC 20 7.857886E-4 44.0 24 CGGCATC 20 7.857886E-4 44.0 5 TAGCGAG 25 4.4440312E-5 44.0 27 ACCGACG 20 7.857886E-4 44.0 31 CCTAACT 20 7.857886E-4 44.0 27 CATTAGC 35 1.446806E-7 44.0 10 ACTAGGT 35 1.446806E-7 44.0 29 TATCTAT 20 7.857886E-4 44.0 18 TACGAAC 30 2.5286645E-6 44.0 23 ACGTGAC 30 2.5286645E-6 44.0 32 CTATTGA 30 2.5286645E-6 44.0 40 TAAGGGC 20 7.857886E-4 44.0 14 CACACGT 25 4.4440312E-5 44.0 39 CCGTTCA 20 7.857886E-4 44.0 13 TACCGTA 20 7.857886E-4 44.0 37 TGCCGAA 20 7.857886E-4 44.0 25 CTAGCGT 20 7.857886E-4 44.0 23 GTAACTA 50 1.3496901E-9 39.6 14 >>END_MODULE