##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527645_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1175127 Sequences flagged as poor quality 0 Sequence length 50 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.360147456402583 31.0 31.0 33.0 3.0 34.0 2 30.096375966172168 33.0 31.0 34.0 16.0 34.0 3 30.174809190836395 31.0 30.0 31.0 25.0 33.0 4 35.642597778793274 35.0 35.0 37.0 33.0 37.0 5 36.045948225170555 37.0 35.0 37.0 35.0 37.0 6 35.49299267228138 35.0 35.0 37.0 35.0 37.0 7 36.35618192757038 37.0 35.0 37.0 35.0 37.0 8 36.656986010873716 37.0 37.0 37.0 35.0 37.0 9 38.748837359706656 39.0 39.0 39.0 39.0 39.0 10 38.26980232774841 39.0 39.0 39.0 37.0 39.0 11 37.90546298400088 39.0 38.0 39.0 35.0 39.0 12 37.33481402435652 39.0 37.0 39.0 35.0 39.0 13 37.18464727642204 39.0 37.0 39.0 34.0 39.0 14 38.04742381036262 40.0 38.0 40.0 34.0 40.0 15 38.0674488799934 40.0 38.0 40.0 34.0 40.0 16 38.0737333071234 40.0 38.0 40.0 34.0 40.0 17 37.97157498721415 40.0 38.0 40.0 34.0 40.0 18 37.8265855520297 40.0 37.0 40.0 33.0 40.0 19 37.783724652739664 40.0 37.0 40.0 33.0 40.0 20 37.61161559559095 40.0 37.0 40.0 33.0 40.0 21 37.61193385906375 40.0 37.0 40.0 33.0 40.0 22 37.7269775947621 40.0 37.0 40.0 33.0 40.0 23 37.68109744733973 40.0 37.0 40.0 33.0 40.0 24 37.58325525666587 39.0 37.0 40.0 33.0 40.0 25 37.56606647621916 39.0 36.0 40.0 33.0 40.0 26 37.36996171477636 39.0 36.0 40.0 33.0 40.0 27 37.26358682933844 39.0 36.0 40.0 33.0 40.0 28 37.037435953730956 39.0 35.0 40.0 32.0 40.0 29 37.16244201690541 39.0 36.0 40.0 33.0 40.0 30 37.321910738158515 40.0 36.0 40.0 33.0 40.0 31 37.39804038201829 40.0 36.0 40.0 33.0 40.0 32 37.39867265410462 40.0 36.0 40.0 33.0 40.0 33 37.260585451615015 40.0 35.0 40.0 33.0 40.0 34 36.87283672317971 40.0 35.0 40.0 32.0 40.0 35 36.81777799335731 39.0 35.0 40.0 32.0 40.0 36 36.76184871932991 39.0 35.0 40.0 32.0 40.0 37 36.66434691739701 39.0 35.0 40.0 32.0 40.0 38 36.56418923231276 39.0 35.0 40.0 32.0 40.0 39 36.42433711420127 39.0 35.0 40.0 31.0 40.0 40 36.18143826156662 39.0 35.0 40.0 31.0 40.0 41 36.011462590851885 38.0 35.0 40.0 31.0 40.0 42 35.877725556471766 38.0 35.0 40.0 30.0 40.0 43 35.71550138836058 38.0 35.0 40.0 30.0 40.0 44 35.330718296830895 37.0 34.0 40.0 29.0 40.0 45 35.29064177744193 37.0 34.0 40.0 29.0 40.0 46 35.072490037247036 37.0 34.0 40.0 29.0 40.0 47 35.014595018240584 36.0 34.0 40.0 29.0 40.0 48 34.8735413278735 36.0 34.0 40.0 29.0 40.0 49 34.74656101000147 35.0 34.0 40.0 28.0 40.0 50 33.98766856688681 35.0 33.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 4.0 15 13.0 16 37.0 17 82.0 18 175.0 19 320.0 20 517.0 21 841.0 22 1383.0 23 2218.0 24 3316.0 25 4591.0 26 6312.0 27 8431.0 28 11313.0 29 14608.0 30 19113.0 31 25109.0 32 35152.0 33 53101.0 34 89807.0 35 96645.0 36 149701.0 37 246568.0 38 333598.0 39 72167.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 0.0 0.0 0.0 100.0 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.20757501104136 0.6028284602430206 0.1325814146045491 0.05701511411107055 8 99.20714952511516 0.5855537316392186 0.15351532217368846 0.05378142107193521 9 97.95349779215353 1.2999446017324083 0.3753636840954212 0.3711939220186414 10 63.09760562049889 27.062521752967978 4.09045150013573 5.749421126397402 11 36.29880004459093 26.14704623415171 19.02764552256905 18.526508198688312 12 30.73659272572241 17.397353647733393 26.35383239428589 25.5122212322583 13 24.321881805115535 17.94929399120265 29.37716519150696 28.351659012174856 14 25.417763356641455 18.137699159324907 30.09972539138323 26.34481209265041 15 25.765725747089462 18.342102598272355 29.176591125895328 26.715580528742848 16 30.762972853146938 19.268470556799393 24.656569034666038 25.31198755538763 17 32.364672073741815 19.848322777027505 22.264402060373047 25.522603088857633 18 30.138274416297133 19.69412667737189 23.074442166676455 27.09315673965452 19 31.395244939483135 20.046258829896686 21.84691526958363 26.711580961036553 20 30.181673980769734 21.639873817893726 22.10024959004431 26.078202611292227 21 31.713253120726527 20.35567219543079 23.584855083748398 24.346219600094287 22 31.06923762282715 19.152568190501963 24.249464100475947 25.52873008619494 23 31.33354948018384 20.153991866411033 22.84672209897313 25.66573655443199 24 31.494808646214413 19.77241608779306 22.241170528802417 26.491604737190105 25 31.371758116356784 19.58664893241326 21.414196082636174 27.627396868593777 26 29.028862412317984 19.633197092739763 22.765879772994747 28.5720607219475 27 28.790164807718654 18.577055926721112 23.02602186827466 29.60675739728557 28 29.852262776704137 20.889571935629085 21.434789601464352 27.82337568620243 29 31.372268699468226 21.24332093467344 21.15209675209573 26.2323136137626 30 29.98144030389907 20.05825753301558 22.425320837662653 27.5349813254227 31 31.31814688965533 20.937992234030876 21.028705833497146 26.715155042816647 32 34.210259827235696 19.905593182694297 21.616727383508337 24.267419606561674 33 33.90884559711419 19.826878286346922 22.153775719560524 24.110500396978367 34 30.954101131196882 22.558753224119606 23.928392420563902 22.558753224119606 35 30.25400658822408 24.147772964113667 24.047783771456192 21.55043667620606 36 30.845006539718682 24.27329131234326 21.250469098233637 23.631233049704413 37 30.73233786646039 24.87943856281066 20.421707611177347 23.966515959551607 38 32.23098439572914 23.90805419329145 20.339844118976078 23.521117292003332 39 31.532591796461144 22.529309598026426 20.657171522737542 25.280927082774884 40 30.448623850868884 22.527267265580655 20.654278218439366 26.36983066511109 41 28.300685798215852 22.453402908791986 21.400155047071507 27.845756245920654 42 27.970764011038806 20.569691616310408 22.882462916774102 28.577081455876684 43 27.018356313828207 19.56273662336071 24.758600559769285 28.6603065030418 44 28.063775234506565 19.20039280860707 24.105990246160626 28.629841710725735 45 28.3995687274652 19.88108519334506 23.632084021556818 28.087262057632923 46 28.155254708640005 21.429853964720408 22.518672449871378 27.896218876768213 47 28.604482749524095 21.26970106209797 23.130351017379397 26.99546517099854 48 28.256265067520363 21.916694961480758 23.608086615319024 26.21895335567985 49 29.089111219468194 20.129909362988 24.02233971306931 26.758639704474497 50 26.60546477104177 21.42406735612406 24.621338799976513 27.349129072857657 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 6.0 6 12.0 7 41.0 8 70.0 9 88.5 10 107.0 11 656.5 12 1206.0 13 1325.0 14 1444.0 15 1684.0 16 1924.0 17 1879.5 18 1835.0 19 1636.5 20 1438.0 21 1823.0 22 2208.0 23 2479.5 24 2751.0 25 3580.5 26 4410.0 27 5026.0 28 5642.0 29 5756.5 30 5871.0 31 6540.5 32 7210.0 33 8634.5 34 10059.0 35 10699.5 36 11340.0 37 12723.5 38 14107.0 39 15057.5 40 16008.0 41 18833.0 42 21658.0 43 23172.5 44 24687.0 45 26541.5 46 28396.0 47 28945.0 48 29494.0 49 36166.0 50 42838.0 51 47550.5 52 52263.0 53 56388.0 54 60513.0 55 68688.5 56 76864.0 57 90319.5 58 103775.0 59 110205.0 60 116635.0 61 120111.0 62 123587.0 63 119721.5 64 115856.0 65 101580.5 66 87305.0 67 77166.5 68 67028.0 69 55192.5 70 43357.0 71 37808.0 72 32259.0 73 27702.0 74 23145.0 75 22964.5 76 22784.0 77 16175.0 78 9566.0 79 6493.0 80 3420.0 81 2353.5 82 1287.0 83 887.0 84 487.0 85 348.0 86 209.0 87 126.5 88 44.0 89 35.5 90 27.0 91 14.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1175127.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.398053462461817 #Duplication Level Percentage of deduplicated Percentage of total 1 68.11540580278113 6.4015222535181895 2 9.54392640740027 1.7938866123709776 3 3.7604187295475917 1.06021848784593 4 1.8531581529786032 0.6966431758435963 5 0.9870350426689908 0.4638104050163228 6 0.6467541774981063 0.36469382023186336 7 0.4633990754304377 0.30485344997454406 8 0.3712664137028634 0.27913452838367814 9 0.33386609242637333 0.2823922247333647 >10 7.830345665786946 21.58508759494621 >50 4.176974930361721 27.123970137498333 >100 1.81893164689698 29.403168566263787 >500 0.06659077744407199 4.184874418874055 >1k 0.028278275352962078 4.057566449765626 >5k 0.003648809722962849 1.9981778747335137 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGTCGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 6139 0.522411620190839 No Hit AGTCGTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 5918 0.5036051422527097 No Hit AGTCGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 5802 0.49373386876482284 No Hit AGTCGTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 5449 0.4636945623749603 No Hit AGTCGTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 2917 0.2482284893462579 No Hit AGTCGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 2781 0.236655272153563 No Hit AGTCGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 2492 0.21206218561908627 No Hit AGTCGTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 2100 0.178704089004848 No Hit AGTCGTGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 2099 0.17861899181960758 No Hit AGTCGTGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATC 2072 0.1763213678181167 No Hit AGTCGTGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCG 2033 0.1730025775937409 No Hit AGTCGTGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG 1758 0.14960085165262987 No Hit AGTCGTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 1754 0.14926046291166825 No Hit AGTCGTGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 1720 0.14636715861349453 No Hit AGTCGTGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAG 1631 0.13879350912709862 No Hit AGTCGTGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGC 1603 0.1364107879403673 No Hit AGTCGTGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 1477 0.12568854260007642 No Hit AGTCGTGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGA 1370 0.11658314377935321 No Hit AGTCGTGGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC 1340 0.1140302282221411 No Hit AGTCGTGGGGATCGTGGTGTGCCCAGCTCTTCCAAGGACTGCTGCGCTTC 1294 0.11011575770108252 No Hit AGTCGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 1284 0.10926478584867849 No Hit AGTCGTGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAA 1276 0.10858400836675525 No Hit AGTCGTGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGGCGT 1272 0.10824361962579364 No Hit AGTCGTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGA 1271 0.10815852244055323 No Hit AGTCGTGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCC 1179 0.10032958139843608 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 7.658746671636343E-4 0.0 0.0 0.0 0.0 8 0.007743843856876746 0.0 0.0 0.0 0.0 9 0.009871273487886842 0.0 0.0 0.0 0.0 10 0.04084664891539382 0.0 0.0 0.0 0.0 11 0.06441856922698568 0.0 0.0 0.0 0.0 12 0.07343887086246849 0.0 0.0 0.0 0.0 13 0.0850120880551634 0.0 0.0 0.0 0.0 14 0.09667040243309873 0.0 0.0 0.0 0.0 15 0.10654167592098557 0.0 0.0 0.0 0.0 16 0.12236975237570066 0.0 0.0 0.0 0.0 17 0.13590020482892487 0.0 0.0 0.0 0.0 18 0.14866478261498545 0.0 0.0 0.0 0.0 19 0.16296110973537328 0.0 0.0 0.0 0.0 20 0.17785311715244395 0.0 0.0 0.0 0.0 21 0.19410667953336108 0.0 0.0 0.0 0.0 22 0.20891358976519134 0.0 0.0 0.0 0.0 23 0.22499695777562764 0.0 0.0 0.0 0.0 24 0.24073993704510235 0.0 0.0 0.0 0.0 25 0.25665311068505786 0.0 0.0 0.0 0.0 26 0.27401293647410024 0.0 0.0 0.0 0.0 27 0.2882241664092477 0.0 0.0 0.0 0.0 28 0.30711574153261734 0.0 0.0 0.0 0.0 29 0.3203058052448799 0.0 0.0 0.0 0.0 30 0.33281509147521926 0.0 0.0 0.0 0.0 31 0.34498398896459703 0.0 0.0 0.0 0.0 32 0.3596207048259465 0.0 0.0 0.0 0.0 33 0.3686410064614293 0.0 0.0 0.0 0.0 34 0.38336281950801915 0.0 0.0 0.0 0.0 35 0.39927599314797463 0.0 0.0 0.0 0.0 36 0.4131468343421605 0.0 0.0 0.0 0.0 37 0.42599650931346145 0.0 0.0 0.0 0.0 38 0.4386759899142816 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATAGA 20 7.8565546E-4 44.0 26 TGATACG 20 7.8565546E-4 44.0 24 CGTATAG 20 7.8565546E-4 44.0 41 ATCTAGT 25 4.4429016E-5 44.0 30 CGACGTA 25 4.4429016E-5 44.0 29 TAGACTA 25 4.4429016E-5 44.0 20 GCGAATA 30 2.527766E-6 44.0 31 GCGCGTA 25 4.4429016E-5 44.0 40 CACGATA 20 7.8565546E-4 44.0 32 TAAGTCG 25 4.4429016E-5 44.0 43 TATGCGC 50 2.7284841E-11 44.0 26 TACATAC 25 4.4429016E-5 44.0 33 CCGTATA 20 7.8565546E-4 44.0 40 ACGATAT 20 7.8565546E-4 44.0 33 TCTAACG 20 7.8565546E-4 44.0 33 CGAATTT 25 4.4429016E-5 44.0 42 CGAATAC 30 2.527766E-6 44.0 32 CCGCGTA 20 7.8565546E-4 44.0 44 ATACGCC 20 7.8565546E-4 44.0 26 GCGCTTA 40 8.312782E-9 44.0 16 >>END_MODULE