##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527644_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1468551 Sequences flagged as poor quality 0 Sequence length 52 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.624136308510906 31.0 31.0 33.0 30.0 34.0 2 32.317553152733545 33.0 31.0 34.0 31.0 34.0 3 30.87502102412514 31.0 31.0 31.0 30.0 33.0 4 35.75679292036845 37.0 35.0 37.0 35.0 37.0 5 36.03745733038893 37.0 35.0 37.0 35.0 37.0 6 35.220144210177246 35.0 35.0 37.0 33.0 37.0 7 36.27530947171736 37.0 35.0 37.0 35.0 37.0 8 36.61761899995302 37.0 37.0 37.0 35.0 37.0 9 38.699128596827755 39.0 39.0 39.0 38.0 39.0 10 38.09865574978329 39.0 38.0 39.0 37.0 39.0 11 37.66418054258926 39.0 37.0 39.0 35.0 39.0 12 37.1039739171469 39.0 37.0 39.0 34.0 39.0 13 36.97514148299923 39.0 37.0 39.0 33.0 39.0 14 37.83872946870759 40.0 37.0 40.0 33.0 40.0 15 37.89307487448512 40.0 37.0 40.0 33.0 40.0 16 37.913633915335595 40.0 37.0 40.0 34.0 40.0 17 37.82700975315124 40.0 37.0 40.0 33.0 40.0 18 37.76917451283612 40.0 37.0 40.0 33.0 40.0 19 37.752657551559324 40.0 37.0 40.0 33.0 40.0 20 37.66901319736257 40.0 37.0 40.0 33.0 40.0 21 37.652236796679176 40.0 37.0 40.0 33.0 40.0 22 37.621971589682616 40.0 37.0 40.0 33.0 40.0 23 37.57350681045466 40.0 37.0 40.0 33.0 40.0 24 37.4608263519619 40.0 36.0 40.0 33.0 40.0 25 37.43740462537563 39.0 36.0 40.0 33.0 40.0 26 37.23461357487755 39.0 36.0 40.0 33.0 40.0 27 37.15186261832241 39.0 35.0 40.0 33.0 40.0 28 36.97883151487419 39.0 35.0 40.0 32.0 40.0 29 36.872822939073956 39.0 35.0 40.0 32.0 40.0 30 36.701257906603175 39.0 35.0 40.0 31.0 40.0 31 36.596675226124255 38.0 35.0 40.0 31.0 40.0 32 36.488714385812955 38.0 35.0 40.0 31.0 40.0 33 36.27020920621756 38.0 35.0 40.0 31.0 40.0 34 36.0907016508109 38.0 35.0 40.0 30.0 40.0 35 35.933695867559244 38.0 35.0 40.0 30.0 40.0 36 35.877983127586305 38.0 34.0 40.0 30.0 40.0 37 35.780327683546574 38.0 34.0 40.0 30.0 40.0 38 35.67449479112404 38.0 34.0 40.0 30.0 40.0 39 35.525214990831095 38.0 34.0 40.0 29.0 40.0 40 35.26287340378373 37.0 34.0 40.0 28.0 40.0 41 35.090790173443075 37.0 34.0 40.0 28.0 40.0 42 34.944225975127864 37.0 33.0 40.0 28.0 40.0 43 34.764781066507055 36.0 33.0 40.0 27.0 40.0 44 34.619140908283065 36.0 33.0 39.0 27.0 40.0 45 34.4435950811378 36.0 33.0 39.0 27.0 40.0 46 34.26084283079035 35.0 33.0 39.0 26.0 40.0 47 34.076555053246366 35.0 33.0 39.0 26.0 40.0 48 33.79347738008418 35.0 33.0 39.0 25.0 40.0 49 34.1979481815749 35.0 33.0 39.0 27.0 40.0 50 34.322071892634305 35.0 33.0 39.0 27.0 40.0 51 34.30210527247607 35.0 33.0 39.0 27.0 40.0 52 33.755909055933365 35.0 33.0 38.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 4.0 15 12.0 16 47.0 17 105.0 18 188.0 19 466.0 20 729.0 21 1363.0 22 2341.0 23 3598.0 24 5408.0 25 7426.0 26 10138.0 27 13684.0 28 17366.0 29 22389.0 30 28589.0 31 37758.0 32 50639.0 33 73309.0 34 127422.0 35 133106.0 36 196833.0 37 279129.0 38 402276.0 39 54225.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 0.0 0.0 0.0 100.0 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.28868660332532 0.582070353702391 0.10466098896122777 0.024582054011062605 8 99.27431869918036 0.5475465271549984 0.12876638264520604 0.04936839101944707 9 97.96057474340353 1.3059812018785864 0.3408121338652863 0.3926319208525955 10 63.23498468898935 26.943974026097834 4.049025195583946 5.7720160893288694 11 36.34017477091364 26.222037913562417 18.854980181144544 18.582807134379397 12 30.803765071829307 17.271514574570443 26.32860554383198 25.596114809768267 13 24.45138098710906 17.830569043907907 29.286759533717248 28.431290435265783 14 25.516512535145186 18.1060106186302 30.051731264355137 26.325745581869477 15 25.85112808475838 18.16559315951574 29.245153896596033 26.738124859129847 16 30.802266996515616 19.03325114347408 24.706870922426255 25.45761093758405 17 32.50687242050157 19.67510832105933 22.303753836264452 25.51426542217465 18 30.34038313957091 19.502693471319688 23.003831668086434 27.153091721022964 19 31.318081564753285 19.978264289084954 21.790526852659525 26.913127293502235 20 30.23136411333348 21.621857191204118 22.006658263826044 26.140120431636355 21 31.769887460496776 20.2791050498076 23.541640705702424 24.409366783993203 22 31.227924668601908 19.009690504449626 24.252000781722938 25.510384045225532 23 31.41688644112462 20.000939701787683 22.756921618656758 25.825252238430945 24 31.427441062652917 19.668026510485507 22.304775251251062 26.599757175610517 25 31.332040902903614 19.401777670642694 21.510182486001508 27.755998940452187 26 29.054489765762305 19.387001200503082 22.81207802793366 28.746431005800954 27 28.73362927130212 18.477329013428882 23.014931044274253 29.77411067099474 28 29.79031712211561 20.853957404271284 21.48280856436038 27.872916909252726 29 31.287643398152326 21.037335441533866 21.21853446015835 26.45648670015546 30 30.00467808063867 20.00223349410405 22.377772375627405 27.61531604962987 31 31.44712032472825 20.78388833618989 20.934853471210737 26.83413786787112 32 34.217878711736944 19.85726066033798 21.5403482752727 24.384512352652376 33 33.99691260296714 19.678104471686716 22.172263680321624 24.152719245024517 34 30.833794672435616 22.27140902835516 24.097154269752973 22.79764202945625 35 30.225780378073352 24.06487755617612 24.131473813303046 21.57786825244748 36 30.902910419862845 24.17627988404897 21.26511098354773 23.655698712540456 37 30.897462873267596 24.73261058008881 20.33562334573331 24.034303200910283 38 32.220195280926575 23.846703315036386 20.34311372230178 23.589987681735263 39 31.54803612540525 22.453016612974285 20.64252450204317 25.356422759577296 40 30.386687285630533 22.541607339479526 20.666357518397387 26.405347856492554 41 28.365511310128145 22.364153509139282 21.45448132206508 27.815853858667488 42 27.99814238661102 20.47903000985325 22.833187270990248 28.68964033254548 43 26.970530815749676 19.418120310428442 24.87622152720607 28.735127346615812 44 27.78861612569124 19.092765590027177 24.32424886844243 28.79436941583915 45 28.342291142765895 19.812863155586697 23.658967240497606 28.185878461149798 46 27.98159546382795 21.266609058861423 22.47541964834725 28.276375828963378 47 28.607654756286983 21.093377077132494 23.27300856422419 27.025959602356338 48 28.386416270187414 21.733327613409408 23.602517038904335 26.27773907749884 49 29.050131728486107 19.993449325219213 24.142777472488184 26.81364147380649 50 26.550865444918152 21.402933912407537 24.702444790817616 27.343755851856695 51 26.472012207951924 21.120070055449215 24.357887468668096 28.05003026793077 52 27.253326578375553 20.856953554898674 24.17205803543765 27.71766183128812 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 8.0 6 16.0 7 48.5 8 81.0 9 99.5 10 118.0 11 700.0 12 1282.0 13 1444.5 14 1896.0 15 2185.0 16 2019.0 17 1853.0 18 1775.0 19 1697.0 20 1918.5 21 2140.0 22 2432.5 23 2725.0 24 3153.5 25 3582.0 26 5005.0 27 6428.0 28 6448.0 29 6468.0 30 6818.5 31 7169.0 32 8517.5 33 9866.0 34 10183.5 35 10501.0 36 13676.0 37 16851.0 38 16598.0 39 19029.0 40 21713.0 41 24028.5 42 26344.0 43 28255.5 44 30167.0 45 32274.0 46 34381.0 47 35844.5 48 37308.0 49 43853.0 50 50398.0 51 55310.5 52 60223.0 53 68625.0 54 77027.0 55 84018.5 56 91010.0 57 101931.5 58 112853.0 59 132847.0 60 152841.0 61 147332.0 62 141823.0 63 143811.0 64 130681.5 65 115564.0 66 101596.5 67 87629.0 68 74531.0 69 61433.0 70 50847.5 71 40262.0 72 37265.0 73 34268.0 74 33172.5 75 32077.0 76 23935.5 77 15794.0 78 10634.0 79 5474.0 80 3730.5 81 1987.0 82 1440.5 83 894.0 84 574.5 85 255.0 86 155.5 87 56.0 88 42.0 89 26.5 90 25.0 91 13.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1468551.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.52760699774399 #Duplication Level Percentage of deduplicated Percentage of total 1 68.51036693517085 5.842294844943714 2 9.444354942069628 1.6107549458634198 3 4.104651744219514 1.050085708119252 4 2.1206862337127323 0.7233751506651217 5 1.2042522859397105 0.5134695110314335 6 0.729931290512128 0.3734740308506114 7 0.5005488425571071 0.2987938668751849 8 0.3719808754949802 0.2537685373518343 9 0.29294648362480197 0.22483192353510206 >10 5.684854784789815 14.047106917609083 >50 4.525852399526043 27.53040281197939 >100 2.3882452168222086 35.571439829839925 >500 0.08221566087322442 4.799491417476608 >1k 0.035919463488301925 5.150110908207313 >5k 0.0031928411989601713 2.0105995956520215 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGTCGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 7604 0.5177893038784489 No Hit AGTCGTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 7556 0.5145207759212993 No Hit AGTCGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 7321 0.49851860779775437 No Hit AGTCGTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 7057 0.4805417040334316 No Hit AGTCGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 3682 0.25072333204635044 No Hit AGTCGTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 3600 0.24513959678621988 No Hit AGTCGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 3366 0.2292055229951156 No Hit AGTCGTGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 2746 0.18698703688193327 No Hit AGTCGTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 2730 0.1858975275628834 No Hit AGTCGTGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 2657 0.1809266412947184 No Hit AGTCGTGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCG 2533 0.17248294407208195 No Hit AGTCGTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT 2351 0.1600897755678897 No Hit AGTCGTGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 2226 0.1515779840128126 No Hit AGTCGTGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGCTG 2194 0.1493989653747129 No Hit AGTCGTGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 2132 0.14517711676339465 No Hit AGTCGTGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAA 1998 0.13605247621635203 No Hit AGTCGTGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCT 1840 0.12529357169073463 No Hit AGTCGTGGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGT 1727 0.11759891212494492 No Hit AGTCGTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGG 1697 0.11555608215172643 No Hit AGTCGTGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGGCGTCC 1633 0.11119804487552698 No Hit AGTCGTGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGG 1623 0.11051710155112081 No Hit AGTCGTGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGA 1605 0.10929140356718971 No Hit AGTCGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 1561 0.10629525293980256 No Hit AGTCGTGGGGATCGTGGTGTGCCCAGCTCTTCCAAGGACTGCTGCGCTTCGG 1559 0.10615906427492133 No Hit AGTCGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT 1549 0.10547812095051516 No Hit AGTCGTGGGGCTCTTTCTAAGCCGGCGATCCGTCAGGGTGAAGCCATGTTCA 1511 0.10289053631777174 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 6.809433244061664E-4 0.0 0.0 0.0 0.0 8 0.005788018257452414 0.0 0.0 0.0 0.0 9 0.007830848230670913 0.0 0.0 0.0 0.0 10 0.032821468236377216 0.0 0.0 0.0 0.0 11 0.05433927728761207 0.0 0.0 0.0 0.0 12 0.061625370858758056 0.0 0.0 0.0 0.0 13 0.07306521870878165 0.0 0.0 0.0 0.0 14 0.08089606693945256 0.0 0.0 0.0 0.0 15 0.0912464054704263 0.0 0.0 0.0 0.0 16 0.10384385697194037 0.0 0.0 0.0 0.0 17 0.11514751615708273 0.0 0.0 0.0 0.0 18 0.1277449676585968 0.0 0.0 0.0 0.0 19 0.1411595511493983 0.0 0.0 0.0 0.0 20 0.15273558766430312 0.0 0.0 0.0 0.0 21 0.16431162417920794 0.0 0.0 0.0 0.0 22 0.17752192467268757 0.0 0.0 0.0 0.0 23 0.19168554582033584 0.0 0.0 0.0 0.0 24 0.2059172613004247 0.0 0.0 0.0 0.0 25 0.21803805247485447 0.0 0.0 0.0 0.0 26 0.23158882463053718 0.0 0.0 0.0 0.0 27 0.24350533280764508 0.0 0.0 0.0 0.0 28 0.25726038796064965 0.0 0.0 0.0 0.0 29 0.26788310382138586 0.0 0.0 0.0 0.0 30 0.278505819682122 0.0 0.0 0.0 0.0 31 0.287221894234521 0.0 0.0 0.0 0.0 32 0.30056838339288183 0.0 0.0 0.0 0.0 33 0.31132728791849923 0.0 0.0 0.0 0.0 34 0.3229033244334041 0.0 0.0 0.0 0.0 35 0.3384288322298647 0.0 0.0 0.0 0.0 36 0.3508220007340569 0.0 0.0 0.0 0.0 37 0.3636237352328928 0.0 0.0 0.0 0.0 38 0.37424645109362903 0.0 0.0 0.0 0.0 39 0.38384775196775595 0.0 0.0 0.0 0.0 40 0.39481093949069523 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAA 35 1.0198346E-7 46.000004 11 GACGTTA 35 1.0198346E-7 46.000004 10 CGCTATA 35 1.0198346E-7 46.000004 13 AGCGTAC 25 3.4176228E-5 46.0 45 CGTATAG 45 3.110472E-10 46.0 41 CGAAATT 20 6.3120294E-4 46.0 14 GCGAATA 30 1.8617593E-6 46.0 31 CGCATTC 20 6.3120294E-4 46.0 43 CGCGATT 45 3.110472E-10 46.0 19 TAACGCA 40 5.6134013E-9 46.0 22 TCGATAG 30 1.8617593E-6 46.0 44 TCGGCAT 20 6.3120294E-4 46.0 45 CCGTATA 45 3.110472E-10 46.0 40 AGGCATA 20 6.3120294E-4 46.0 19 CGAATAC 30 1.8617593E-6 46.0 32 GCGATTA 30 1.8617593E-6 46.0 30 AACGAAA 55 1.8189894E-12 46.0 13 ACTAACG 25 3.4176228E-5 46.0 17 TCCGTAC 20 6.3120294E-4 46.0 40 CGGTATA 25 3.4176228E-5 46.0 43 >>END_MODULE