##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527594_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2411012 Sequences flagged as poor quality 0 Sequence length 50 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.990630905196657 31.0 31.0 33.0 28.0 34.0 2 30.752834079631292 31.0 31.0 33.0 28.0 34.0 3 30.684694227983933 31.0 31.0 33.0 28.0 34.0 4 35.39148623067824 37.0 35.0 37.0 33.0 37.0 5 35.755133528991145 37.0 35.0 37.0 35.0 37.0 6 36.22066335630018 37.0 36.0 37.0 35.0 37.0 7 36.13095206494202 37.0 36.0 37.0 35.0 37.0 8 36.359020195668876 37.0 37.0 37.0 35.0 37.0 9 38.132450191040114 39.0 39.0 39.0 37.0 39.0 10 36.5604298112162 39.0 37.0 39.0 31.0 39.0 11 36.968378008902484 39.0 37.0 39.0 34.0 39.0 12 36.718482529327936 38.0 35.0 39.0 33.0 39.0 13 36.83012403090486 39.0 35.0 39.0 33.0 39.0 14 37.5770315535551 40.0 37.0 40.0 33.0 40.0 15 37.60312764930245 40.0 37.0 40.0 33.0 40.0 16 37.673218963655096 40.0 37.0 40.0 33.0 40.0 17 37.573836214834266 40.0 37.0 40.0 33.0 40.0 18 37.43999324764871 39.0 36.0 40.0 33.0 40.0 19 37.34942173659857 39.0 36.0 40.0 33.0 40.0 20 37.1344373234144 39.0 36.0 40.0 33.0 40.0 21 37.076869795753815 39.0 36.0 40.0 33.0 40.0 22 36.90552888164804 38.0 35.0 40.0 32.0 40.0 23 36.695105208933015 38.0 35.0 40.0 32.0 40.0 24 36.581968484603145 38.0 35.0 40.0 32.0 40.0 25 36.367964157789345 38.0 35.0 40.0 32.0 40.0 26 35.898763257918255 38.0 35.0 39.0 31.0 40.0 27 35.68821308230735 37.0 34.0 39.0 30.0 40.0 28 35.53413006654467 37.0 34.0 39.0 30.0 40.0 29 35.2096733653752 36.0 34.0 38.0 30.0 40.0 30 34.9105777988662 36.0 34.0 38.0 30.0 40.0 31 34.78704626936739 36.0 33.0 38.0 29.0 40.0 32 34.614218842544126 36.0 33.0 38.0 29.0 39.0 33 34.03798736796001 35.0 33.0 38.0 27.0 39.0 34 33.52843909528447 35.0 32.0 38.0 26.0 39.0 35 33.33114974127047 35.0 32.0 38.0 26.0 39.0 36 33.113607066244384 34.0 31.0 37.0 26.0 39.0 37 32.92949972874461 34.0 31.0 37.0 26.0 38.0 38 32.542473036218816 34.0 31.0 37.0 25.0 38.0 39 31.85616247451278 34.0 30.0 36.0 23.0 38.0 40 31.61012471111716 33.0 30.0 36.0 23.0 38.0 41 31.322136928393554 33.0 29.0 36.0 23.0 38.0 42 30.815135718942916 33.0 29.0 35.0 23.0 38.0 43 30.28301352295219 32.0 28.0 35.0 22.0 37.0 44 29.774826089625435 31.0 27.0 34.0 21.0 37.0 45 29.254428430882964 31.0 26.0 34.0 20.0 37.0 46 29.03455022206443 31.0 26.0 34.0 20.0 36.0 47 28.596709182700046 31.0 26.0 34.0 19.0 36.0 48 28.0855802459714 30.0 24.0 33.0 18.0 35.0 49 27.665904192928114 29.0 24.0 33.0 18.0 35.0 50 31.1074557073959 33.0 29.0 35.0 23.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 8.0 11 24.0 12 85.0 13 185.0 14 353.0 15 579.0 16 930.0 17 1374.0 18 1936.0 19 2654.0 20 3806.0 21 5336.0 22 7478.0 23 10089.0 24 14110.0 25 18398.0 26 24721.0 27 32499.0 28 41675.0 29 54286.0 30 72363.0 31 99505.0 32 159156.0 33 249757.0 34 324518.0 35 563466.0 36 610596.0 37 109343.0 38 1779.0 39 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 0.0 100.0 6 0.0 0.0 0.0 100.0 7 98.20009191161222 0.7282419166723352 0.38270236730468365 0.688963804410762 8 97.8258507216057 1.1128107201457313 0.4738674050564659 0.5874711531921035 9 92.02998574872294 4.68239063098815 1.5239658699334553 1.7636577503554525 10 46.6816838738256 37.75381458076525 6.407475367190209 9.157026178218938 11 37.02324998797186 19.61653446768411 24.38469820971443 18.975517334629608 12 31.130703621549788 16.628411637934608 26.662082146418186 25.578802594097418 13 27.912926190330033 16.736872317516465 28.303052825950264 27.047148666203235 14 26.080417683528744 18.587671898771138 31.434186142582448 23.897724275117668 15 29.336892557979805 18.147358868392192 29.762357051727655 22.753391521900348 16 34.577264650694396 19.802016746494832 24.44811556309135 21.17260303971942 17 31.859609159970997 20.749378269374024 22.671600141351433 24.719412429303546 18 31.049161099156702 21.378906450901116 22.549784074073457 25.022148375868724 19 31.629664223985614 23.55239210754654 22.48586900438488 22.332074664082967 20 32.006435471909725 24.832767319283356 22.550281790385114 20.61051541842181 21 30.84787632745088 23.457867484691075 25.307256869729393 20.386999318128655 22 29.35987046103462 21.234112480568328 26.53707239947375 22.868944658923308 23 29.240252640799795 23.050611112677995 25.837117359847234 21.872018886674972 24 29.924363711171907 21.583550807710623 23.226056112536977 25.266029368580494 25 27.24768686344158 21.19657637539755 23.62588821623451 27.92984854492636 26 25.704641868227945 22.417515964250697 24.960307124145377 26.917535043375977 27 23.28868541508711 22.125066154793092 24.370969534784564 30.215278895335235 28 25.50281790385116 25.924591001620893 23.11850791285983 25.454083181668114 29 28.669952700359847 23.6187542824341 23.29959369758425 24.411699319621803 30 28.203924327211976 22.055800634754203 24.596103213090604 25.144171824943218 31 31.497479066881457 21.583758189507144 24.207386773686736 22.711375969924664 32 32.762300643879 20.71503584386971 23.667032764664796 22.855630747586492 33 32.3030329172978 20.904665758610907 24.58706136676217 22.20523995732912 34 27.437192349104855 23.77006004117773 27.37195003591853 21.420797573798886 35 25.716670012426317 28.080573634639727 25.892032059566688 20.310724293367265 36 26.838149291666735 27.619646853686337 23.526801193855526 22.015402660791402 37 28.092726207916012 28.64730660817947 21.813329838258788 21.446637345645726 38 29.05667827451709 26.799327419357517 21.351863864634435 22.79213044149096 39 28.487290813981847 24.424432561928352 21.58450476397463 25.503771860115172 40 25.84226042840102 24.964911000028202 22.014821991761135 27.178006579809637 41 24.33828616365244 25.496679402674065 22.263058002199905 27.901976431473592 42 22.64215192624508 23.972423198225474 23.852390614397606 29.533034261131842 43 23.854588861440757 22.114821494044826 24.286399238162232 29.74419040635219 44 25.875565944922712 21.445849294818938 23.331489017889584 29.34709574236877 45 26.49696476002608 23.69992351759344 22.59694269460293 27.20616902777755 46 25.233263044729764 24.812402426864736 23.33795932994112 26.616375198464382 47 25.007507221034153 23.81958281418757 25.04496037348632 26.127949591291955 48 26.54623867488009 22.534852584723758 25.8561135324088 25.062795207987353 49 27.0836478623914 22.174962215036672 25.28220514870934 25.459184773862592 50 25.150268849761016 22.048708177313095 26.540929700889087 26.260093272036805 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 6.0 8 12.0 9 55.0 10 98.0 11 170.0 12 242.0 13 594.0 14 946.0 15 2029.5 16 3113.0 17 3386.5 18 3660.0 19 3640.5 20 3621.0 21 3711.0 22 3801.0 23 4288.5 24 4776.0 25 4962.5 26 5149.0 27 7170.0 28 9191.0 29 10871.5 30 12552.0 31 15068.0 32 17584.0 33 22797.0 34 28010.0 35 29195.5 36 30381.0 37 34219.5 38 38058.0 39 43486.0 40 48914.0 41 55526.5 42 62139.0 43 65319.5 44 68500.0 45 74777.5 46 81055.0 47 86558.0 48 92061.0 49 97529.0 50 102997.0 51 109318.5 52 115640.0 53 122968.0 54 130296.0 55 137482.5 56 144669.0 57 154244.5 58 163820.0 59 183096.5 60 202373.0 61 208873.0 62 215373.0 63 216480.0 64 217587.0 65 223396.0 66 229205.0 67 186025.5 68 142846.0 69 113826.0 70 84806.0 71 67418.5 72 50031.0 73 43023.5 74 36016.0 75 30133.5 76 24251.0 77 23969.5 78 23688.0 79 16707.0 80 9726.0 81 5913.0 82 2100.0 83 1644.0 84 1188.0 85 805.0 86 422.0 87 251.5 88 81.0 89 51.0 90 21.0 91 14.5 92 8.0 93 5.5 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2411012.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.502260270012167 #Duplication Level Percentage of deduplicated Percentage of total 1 72.25869990835578 8.311383731186126 2 8.807780855179645 2.0261877559501325 3 3.1552820286971635 1.0887862535810033 4 1.3744792246804869 0.6323847111199796 5 0.7931479269127103 0.456149694398529 6 0.5133090933460026 0.35425288743778155 7 0.40263987714320376 0.3241888063390797 8 0.3458489372078055 0.31824355918970193 9 0.3174803466337577 0.32865674198356454 >10 8.165768869354197 25.481660093700743 >50 2.4518674448024944 19.23287553074222 >100 1.3384445134068528 29.336812006955594 >500 0.05406380676423797 4.1031990131005145 >1k 0.01899539156581334 4.139543973894451 >5k 7.30591983300513E-4 0.6067297501323171 >10k+ 0.001461183966601026 3.258945490288281 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTTGCCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 31417 1.303062780276498 No Hit GTTGCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 18931 0.7851889579977204 No Hit GTTGCCGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 14488 0.600909493606834 No Hit GTTGCCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 12726 0.5278281485119112 No Hit GTTGCCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 9196 0.38141660016623724 No Hit GTTGCCGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTT 5244 0.21750202819397 No Hit GTTGCCGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 4787 0.19854733199171137 No Hit GTTGCCGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 4414 0.1830766499710495 No Hit GTTGCCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 4241 0.17590123981133235 No Hit GTTGCCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 3876 0.16076236866510826 No Hit GTTGCCGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 3760 0.15595111098576034 No Hit GTTGCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 3338 0.13844808735916703 No Hit GTTGCCGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 3208 0.13305616064955297 No Hit GTTGCCGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 3025 0.12546598689678856 No Hit GTTGCCGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCT 2967 0.12306035805711461 No Hit GTTGCCGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA 2700 0.11198617012275344 No Hit GTTGCCGGGGGGGCTGGCGAGATGGCTCAGCGGGTAAGAGCACCCGATTG 2528 0.104852236322341 No Hit GTTGCCGGGGGCAGTGGTGGCGCACGCCTTTCGTCCCAGCACTTGGGAGG 2522 0.10460337816651265 No Hit GTTGCCGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTTGCCGGGA 2500 0.10369089826180874 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.004064683211862903 0.0 0.0 0.0 0.0 8 0.006470312051536865 0.0 0.0 0.0 0.0 9 0.006843599285279376 0.0 0.0 0.0 0.0 10 0.013604245851949305 0.0 0.0 0.0 0.0 11 0.02160918319776094 0.0 0.0 0.0 0.0 12 0.0330151820065599 0.0 0.0 0.0 0.0 13 0.04321836639552188 0.0 0.0 0.0 0.0 14 0.05644932501372867 0.0 0.0 0.0 0.0 15 0.06681841483990955 0.0 0.0 0.0 0.0 16 0.07631650112069123 0.0 0.0 0.0 0.0 17 0.08519244201190206 0.0 0.0 0.0 0.0 18 0.09456609921476956 0.0 0.0 0.0 0.0 19 0.10825329778532831 0.0 0.0 0.0 0.0 20 0.11928600936038476 0.0 0.0 0.0 0.0 21 0.12828637932950976 0.0 0.0 0.0 0.0 22 0.13707936750211114 0.0 0.0 0.0 0.0 23 0.14748993368759675 0.0 0.0 0.0 0.0 24 0.1588959324963957 0.0 0.0 0.0 0.0 25 0.1690991168853577 0.0 0.0 0.0 0.0 26 0.17926082491501494 0.0 0.0 0.0 0.0 27 0.19460707785776263 0.0 0.0 0.0 0.0 28 0.23405109555655468 0.0 0.0 0.0 0.0 29 0.2450423307723064 0.0 0.0 0.0 0.0 30 0.26055448915227297 0.0 0.0 0.0 0.0 31 0.26947190640278856 0.0 0.0 0.0 0.0 32 0.2788040872463513 0.0 0.0 0.0 0.0 33 0.2873482172631244 0.0 0.0 0.0 0.0 34 0.3015331321453398 0.0 0.0 0.0 0.0 35 0.33301368885762495 0.0 0.0 0.0 0.0 36 0.3485258472375915 0.0 0.0 0.0 0.0 37 0.36076137323248497 0.0 0.0 0.0 0.0 38 0.3715452266517131 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAACGC 20 7.8582024E-4 44.000004 17 GCGTAAC 20 7.8582024E-4 44.000004 33 CGTACCG 25 4.4442997E-5 44.0 32 TATACGC 25 4.4442997E-5 44.0 39 TGCCGGA 11035 0.0 42.62438 3 GTTGCCG 247915 0.0 42.042393 1 TTGCCGG 244660 0.0 41.990276 2 CGGGATA 3675 0.0 41.904762 6 TGCCGGG 227495 0.0 41.797047 3 CCGGGAT 28490 0.0 41.722008 5 CGGGATT 9705 0.0 41.71046 6 GCCGGGA 88345 0.0 41.659176 4 GCCGGGG 109310 0.0 41.55466 4 GCCGGAT 3305 0.0 41.537067 4 CCGGGGG 48350 0.0 41.456463 5 CGGGGGG 27265 0.0 41.43407 6 CGGGATC 8565 0.0 41.354347 6 TGCCGGT 3285 0.0 41.321156 3 CCGGGAC 13525 0.0 41.283546 5 CCGGGAA 16760 0.0 41.125294 5 >>END_MODULE