##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527579_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 943786 Sequences flagged as poor quality 0 Sequence length 50 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.63207231300316 31.0 31.0 34.0 30.0 34.0 2 31.86719870818173 33.0 31.0 34.0 30.0 34.0 3 32.552161189083115 34.0 31.0 34.0 31.0 34.0 4 35.37596234739655 37.0 35.0 37.0 33.0 37.0 5 35.62711038307413 37.0 35.0 37.0 35.0 37.0 6 35.876141413413634 37.0 35.0 37.0 35.0 37.0 7 36.48171407501277 37.0 37.0 37.0 35.0 37.0 8 36.67692993962614 37.0 37.0 37.0 35.0 37.0 9 38.6571426149572 39.0 39.0 39.0 39.0 39.0 10 37.40102523241497 39.0 37.0 39.0 34.0 39.0 11 37.370118861691104 39.0 37.0 39.0 35.0 39.0 12 37.20525839544134 39.0 37.0 39.0 35.0 39.0 13 37.197365716380624 39.0 37.0 39.0 34.0 39.0 14 38.04373766934453 40.0 38.0 40.0 34.0 40.0 15 38.00920123841634 40.0 38.0 40.0 34.0 40.0 16 38.0900585514089 40.0 38.0 40.0 35.0 40.0 17 38.013660935847746 40.0 38.0 40.0 34.0 40.0 18 37.87192011748426 40.0 37.0 40.0 34.0 40.0 19 37.80572608621022 40.0 37.0 40.0 34.0 40.0 20 37.64842665604279 39.0 37.0 40.0 33.0 40.0 21 37.5015384843598 39.0 36.0 40.0 33.0 40.0 22 37.34570442875821 39.0 36.0 40.0 33.0 40.0 23 37.13294221359503 38.0 36.0 40.0 33.0 40.0 24 36.97426111427802 38.0 36.0 40.0 33.0 40.0 25 36.745956180744365 38.0 35.0 40.0 32.0 40.0 26 36.168070939810505 38.0 35.0 40.0 31.0 40.0 27 36.07743386742334 38.0 35.0 39.0 31.0 40.0 28 35.92099480178769 38.0 34.0 39.0 31.0 40.0 29 35.61237081287495 37.0 34.0 39.0 31.0 40.0 30 35.36183308504258 37.0 34.0 38.0 30.0 40.0 31 35.224725732316436 37.0 34.0 38.0 30.0 40.0 32 35.10096780414204 36.0 34.0 38.0 30.0 40.0 33 34.52352757934532 36.0 33.0 38.0 29.0 39.0 34 34.032922717649974 36.0 32.0 38.0 27.0 39.0 35 33.909345974617125 35.0 32.0 38.0 27.0 39.0 36 33.62726825784659 35.0 32.0 38.0 27.0 39.0 37 33.49558692330677 35.0 32.0 38.0 27.0 39.0 38 32.951325830219986 34.0 31.0 37.0 26.0 38.0 39 32.16447160691089 34.0 30.0 37.0 24.0 38.0 40 31.88876715696143 33.0 30.0 36.0 24.0 38.0 41 31.613114625561302 33.0 29.0 36.0 23.0 38.0 42 31.29195813457712 33.0 29.0 36.0 23.0 38.0 43 30.714801872458374 32.0 28.0 35.0 23.0 38.0 44 30.352678467364424 32.0 28.0 35.0 22.0 37.0 45 29.97115023956702 31.0 27.0 34.0 21.0 37.0 46 29.70275359032662 31.0 27.0 34.0 21.0 37.0 47 29.272978196328406 31.0 26.0 34.0 20.0 37.0 48 28.741137291716555 31.0 26.0 34.0 19.0 36.0 49 28.197782124337508 30.0 25.0 33.0 18.0 36.0 50 31.745398851010716 33.0 30.0 36.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 4.0 14 12.0 15 21.0 16 54.0 17 150.0 18 255.0 19 407.0 20 656.0 21 961.0 22 1543.0 23 2269.0 24 3308.0 25 4724.0 26 6711.0 27 9267.0 28 12588.0 29 17424.0 30 24006.0 31 33628.0 32 52516.0 33 82515.0 34 120261.0 35 227609.0 36 281030.0 37 60569.0 38 1294.0 39 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 100.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.56102336758545 0.2765457423610861 0.13477631581735688 0.027654574236108606 8 99.24612147245244 0.5583892958785148 0.1572390351202497 0.0382501965487939 9 97.71166344912936 1.4605005795805406 0.25291750460379786 0.5749184666863039 10 53.05715490587909 35.84329498424431 4.403540633152007 6.696009476724596 11 33.37250181714923 22.507856653944856 23.52185770926884 20.597783819637076 12 28.78586883043402 16.93402953635676 28.7719885652044 25.508113068004825 13 25.426950601089654 16.63290195023024 30.368113110387313 27.572034338292788 14 27.236576935873174 17.810817282731467 29.07195063287652 25.880655148518837 15 25.861371115909748 20.139735067059693 27.43248999243473 26.56640382459583 16 30.02248391054752 23.260463706814893 23.110217782421014 23.606834600216576 17 30.955852280071966 22.156823686725595 22.673466230692128 24.213857802510315 18 30.567628678535176 20.360124011163546 24.26450487716495 24.807742433136326 19 30.994526301513265 21.819988853405327 21.549270703316218 25.63621414176519 20 31.66056712008866 20.976577317315577 23.677931225934692 23.684924336661066 21 32.015838336233 20.071711171812254 25.316226347922093 22.59622414403265 22 33.3412447313268 19.465323706857273 23.02820766572083 24.16522389609509 23 30.92353563201827 21.869152540936188 23.64985282680608 23.55745900023946 24 29.790757650569088 21.14218689406285 22.525445386983915 26.54161006838415 25 28.336614444376163 21.46726058661603 22.782919009182166 27.41320595982564 26 27.892763825697774 22.147711451536683 22.63330882212705 27.32621590063849 27 27.616112127113563 20.912261889877577 22.19327262748123 29.27835335552763 28 28.420001991976996 22.573549512283506 22.443859095176236 26.56258940056326 29 30.52842487597824 21.59981182174773 21.68023259510101 26.191530707173023 30 28.379632670965666 21.870529971836834 21.487180356563883 28.262657000633617 31 29.941851224747985 21.748468402794703 21.150133610797365 27.159546761659954 32 33.02644879241692 21.751435177042254 21.917998359797668 23.304117670743153 33 31.5727294111165 21.685106581364842 23.438046336775496 23.304117670743153 34 28.55287109577807 23.208227288813355 26.467864537087856 21.77103707832072 35 28.37168595423115 25.043495029593572 24.81802018677963 21.766798829395647 36 28.760757205552956 24.96010748199274 22.798388617758686 23.48074669469562 37 29.54207839489037 26.12064599390116 20.806411622973854 23.53086398823462 38 30.633109624427572 25.070195997821543 21.224832748101793 23.071861629649092 39 30.007226214417255 23.593060291210083 21.51653023037002 24.883183264002646 40 28.094292562085048 23.825210376081017 22.667850550866405 25.41264651096753 41 26.886391618438925 22.817990519037153 23.821184039602198 26.47443382292172 42 27.09745641490762 22.11719605927615 22.482639072840666 28.302708452975565 43 25.516589565854968 22.324128563042894 24.931923126641 27.22735874446114 44 27.733511622338114 22.298169288376815 25.094248060471337 24.874071028813734 45 27.617383601791083 21.4667308055004 24.204215786205772 26.711669806502748 46 26.457586783444555 23.0750403163429 24.483092565475648 25.984280334736898 47 27.5081427357473 24.216824576757865 23.498653296404058 24.776379391090778 48 28.209996757739574 22.946621373913153 24.597419330229524 24.24596253811775 49 26.972004246725422 22.9834941395613 24.074525369098502 25.969976244614774 50 26.832777769536737 23.32488509047602 23.914425515953827 25.927911624033413 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 10.0 4 20.0 5 18.5 6 17.0 7 28.5 8 40.0 9 226.5 10 413.0 11 799.0 12 1185.0 13 1174.0 14 1163.0 15 1078.5 16 994.0 17 1263.5 18 1533.0 19 1448.5 20 1364.0 21 1819.0 22 2274.0 23 2511.0 24 2748.0 25 3994.0 26 5240.0 27 4943.5 28 4647.0 29 6271.0 30 7895.0 31 9430.5 32 10966.0 33 11803.5 34 12641.0 35 14584.5 36 16528.0 37 17735.5 38 18943.0 39 21735.5 40 24528.0 41 25627.5 42 26727.0 43 29900.5 44 33074.0 45 35024.5 46 36975.0 47 39291.5 48 41608.0 49 45359.5 50 49111.0 51 51711.5 52 54312.0 53 56940.5 54 59569.0 55 71536.0 56 83503.0 57 86799.0 58 90095.0 59 86041.5 60 81988.0 61 82609.0 62 83230.0 63 73098.5 64 62967.0 65 51327.5 66 39688.0 67 32709.5 68 25731.0 69 23101.0 70 20471.0 71 17030.0 72 13589.0 73 16274.0 74 18959.0 75 12586.5 76 6214.0 77 4001.5 78 1789.0 79 1222.5 80 656.0 81 495.0 82 334.0 83 190.5 84 47.0 85 27.5 86 8.0 87 4.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 943786.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.655306792281948 #Duplication Level Percentage of deduplicated Percentage of total 1 70.7002130927117 7.533324607825522 2 10.244760954149895 2.1832214196011654 3 3.9098367063086914 1.2498152884033287 4 1.716908498513846 0.7317674714376475 5 0.9289502484243533 0.4949124945864008 6 0.5429709169874885 0.34713130198730063 7 0.4049783081952776 0.30206176826279957 8 0.32798243231516055 0.2795802751037508 9 0.2839847889557897 0.2723350545598844 >10 6.193668249268165 18.72335464307484 >50 3.0268378738351203 22.401476090047353 >100 1.6209131792159663 34.73156288734313 >500 0.07099619723894732 4.836184713017657 >1k 0.026998553879599683 5.913271984749216 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TGCAATGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGA 4917 0.5209867491147357 No Hit TGCAATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 4774 0.5058350092075957 No Hit TGCAATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 4711 0.49915976715060406 No Hit TGCAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 4269 0.45232711652853513 No Hit TGCAATGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA 3094 0.3278285543544829 No Hit TGCAATGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACA 2906 0.30790878440663455 No Hit TGCAATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 2365 0.2505864676950071 No Hit TGCAATGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAG 2275 0.24105040761359034 No Hit TGCAATGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCAC 2122 0.22483910547518188 No Hit TGCAATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 1891 0.20036321793287884 No Hit TGCAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 1858 0.1968666625696927 No Hit TGCAATGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 1608 0.17037760678797947 No Hit TGCAATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1569 0.16624531408603221 No Hit TGCAATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGA 1513 0.16031176559092847 No Hit TGCAATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 1494 0.15829859735151824 No Hit TGCAATGGGGTGCCAGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTT 1446 0.1532126986414293 No Hit TGCAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 1435 0.15204718018703392 No Hit TGCAATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG 1305 0.13827287118054304 No Hit TGCAATGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAA 1228 0.13011424199977537 No Hit TGCAATGGGGGGCTGGAGAGATGGCTTAGCAGTTAAGAGCACTGACTGCT 1219 0.1291606359916337 No Hit TGCAATGGGGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACTGACTGCT 1127 0.11941266346396323 No Hit TGCAATGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTT 1104 0.11697567033204562 No Hit TGCAATGGGAGAGTGTGGCCAGGCGGCTCGGACCGAGCAGGGCTTTCCTT 1074 0.11379698363824002 No Hit TGCAATGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCATTGACTGC 1069 0.11326720252260575 No Hit TGCAATGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCC 1050 0.11125403428319555 No Hit TGCAATGGGGGATGCAAGAGCCTAGTGCGGTGCTGTGAGAAGTATCGGTG 1042 0.11040638449818074 No Hit TGCAATGGGGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGG 1034 0.1095587347131659 No Hit TGCAATGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCC 982 0.10404901111056956 No Hit TGCAATGGGGGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTG 951 0.10076436819363713 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.003178686693805587 0.0 0.0 0.0 0.0 8 0.004768030040708381 0.0 0.0 0.0 0.0 9 0.00582759227197691 0.0 0.0 0.0 0.0 10 0.019813813724721494 0.0 0.0 0.0 0.0 11 0.03528342230124202 0.0 0.0 0.0 0.0 12 0.04619691328330787 0.0 0.0 0.0 0.0 13 0.05371980512531443 0.0 0.0 0.0 0.0 14 0.06262012786797007 0.0 0.0 0.0 0.0 15 0.07258001284189425 0.0 0.0 0.0 0.0 16 0.08391732871646751 0.0 0.0 0.0 0.0 17 0.09440699480602595 0.0 0.0 0.0 0.0 18 0.10129414930927139 0.0 0.0 0.0 0.0 19 0.11040638449818073 0.0 0.0 0.0 0.0 20 0.11898883857145581 0.0 0.0 0.0 0.0 21 0.12651173041346236 0.0 0.0 0.0 0.0 22 0.13350484113983466 0.0 0.0 0.0 0.0 23 0.1415575140974755 0.0 0.0 0.0 0.0 24 0.15204718018703392 0.0 0.0 0.0 0.0 25 0.16084154670656273 0.0 0.0 0.0 0.0 26 0.17069547545736002 0.0 0.0 0.0 0.0 27 0.1816089664394259 0.0 0.0 0.0 0.0 28 0.1988798308091029 0.0 0.0 0.0 0.0 29 0.20693250376674374 0.0 0.0 0.0 0.0 30 0.21678643251754104 0.0 0.0 0.0 0.0 31 0.22875948573087543 0.0 0.0 0.0 0.0 32 0.23924915182043388 0.0 0.0 0.0 0.0 33 0.24846734323247008 0.0 0.0 0.0 0.0 34 0.2583212719832674 0.0 0.0 0.0 0.0 35 0.27400279300604163 0.0 0.0 0.0 0.0 36 0.28682349600439083 0.0 0.0 0.0 0.0 37 0.2987965492177252 0.0 0.0 0.0 0.0 38 0.30949812775353736 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCGTAA 20 7.8557647E-4 44.000004 31 CGCATAA 20 7.8557647E-4 44.000004 44 ACCGAAT 20 7.8557647E-4 44.000004 20 CGTTACG 20 7.8557647E-4 44.000004 44 AACGGTA 40 8.309144E-9 44.000004 44 ACGTGCG 20 7.8557647E-4 44.000004 38 GCGATTA 40 8.309144E-9 44.000004 23 AATTCGT 20 7.8557647E-4 44.000004 13 CAAGCCG 75 0.0 44.000004 26 ATGCGAA 20 7.8557647E-4 44.000004 18 TTACGAA 20 7.8557647E-4 44.000004 27 CTTTCGT 20 7.8557647E-4 44.000004 11 ACGTAAT 40 8.309144E-9 44.000004 21 ATCGCGC 20 7.8557647E-4 44.000004 27 GTCGGTA 65 0.0 44.000004 10 GTACGTT 20 7.8557647E-4 44.000004 19 AATCGCT 20 7.8557647E-4 44.000004 26 GTACGGT 20 7.8557647E-4 44.000004 14 ACGAATC 20 7.8557647E-4 44.000004 20 TGCCGAT 20 7.8557647E-4 44.000004 13 >>END_MODULE