##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527564_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3085627 Sequences flagged as poor quality 0 Sequence length 50 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.532781181912135 31.0 31.0 33.0 28.0 33.0 2 29.833535291206616 31.0 30.0 31.0 25.0 33.0 3 31.222586851878077 31.0 31.0 33.0 30.0 34.0 4 35.92865339848271 37.0 35.0 37.0 35.0 37.0 5 33.658664511297054 35.0 33.0 35.0 30.0 35.0 6 34.45284929124615 35.0 35.0 36.0 32.0 37.0 7 35.586443209111145 36.0 35.0 37.0 35.0 37.0 8 36.20111050363508 37.0 35.0 37.0 35.0 37.0 9 38.42033369555037 39.0 39.0 39.0 37.0 39.0 10 36.52690879357745 39.0 37.0 39.0 32.0 39.0 11 35.5711393502844 37.0 35.0 39.0 31.0 39.0 12 35.382211135694625 37.0 35.0 39.0 31.0 39.0 13 35.849853206495794 37.0 35.0 39.0 32.0 39.0 14 36.50929778615497 38.0 35.0 40.0 31.0 40.0 15 36.71273423521378 38.0 36.0 40.0 32.0 40.0 16 36.88184735225612 38.0 36.0 40.0 32.0 40.0 17 36.808263928206486 38.0 36.0 40.0 32.0 40.0 18 36.668791788508464 38.0 35.0 40.0 32.0 40.0 19 36.661946502283 38.0 35.0 40.0 32.0 40.0 20 36.53153540593208 38.0 35.0 40.0 31.0 40.0 21 36.4448697136757 38.0 35.0 40.0 31.0 40.0 22 36.28689533764126 38.0 35.0 40.0 31.0 40.0 23 36.06476576721684 38.0 34.0 40.0 31.0 40.0 24 35.990728626629206 38.0 34.0 39.0 30.0 40.0 25 35.75662774534965 38.0 34.0 39.0 30.0 40.0 26 35.238566424263205 37.0 34.0 39.0 29.0 40.0 27 35.06613080582974 37.0 34.0 39.0 29.0 40.0 28 34.84809667532725 37.0 33.0 39.0 29.0 40.0 29 34.57887132825841 36.0 33.0 38.0 27.0 40.0 30 34.287623876767995 36.0 33.0 38.0 27.0 40.0 31 34.239818357824845 36.0 33.0 38.0 27.0 40.0 32 34.24189508323592 36.0 33.0 38.0 27.0 40.0 33 33.74841191109619 36.0 32.0 38.0 26.0 39.0 34 33.13672164522802 35.0 31.0 38.0 24.0 39.0 35 32.99527097734107 35.0 31.0 38.0 24.0 39.0 36 32.82052658989567 35.0 31.0 38.0 24.0 39.0 37 32.70788076459014 34.0 31.0 38.0 24.0 39.0 38 32.32620987565898 34.0 30.0 37.0 23.0 38.0 39 31.553714366642502 34.0 29.0 36.0 22.0 38.0 40 31.193324079676515 33.0 29.0 36.0 21.0 38.0 41 30.964553395468734 33.0 29.0 36.0 21.0 38.0 42 30.67892651963442 33.0 28.0 36.0 21.0 38.0 43 30.286069249458862 32.0 28.0 35.0 20.0 38.0 44 29.804129922378824 32.0 27.0 35.0 19.0 37.0 45 29.247982986926157 31.0 26.0 34.0 19.0 37.0 46 29.021546026139905 31.0 26.0 34.0 18.0 37.0 47 28.43160109760512 31.0 25.0 34.0 18.0 37.0 48 27.87840882906456 30.0 24.0 33.0 15.0 36.0 49 26.863900594595524 29.0 23.0 33.0 13.0 35.0 50 30.304485603736293 32.0 27.0 35.0 20.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 53.0 12 106.0 13 256.0 14 443.0 15 790.0 16 1139.0 17 1706.0 18 2710.0 19 3931.0 20 5774.0 21 8551.0 22 12186.0 23 16710.0 24 23969.0 25 31801.0 26 42615.0 27 57580.0 28 75213.0 29 96345.0 30 128531.0 31 177351.0 32 255012.0 33 335071.0 34 435469.0 35 636546.0 36 609993.0 37 123544.0 38 2229.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 100.0 0.0 3 100.0 0.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 99.48405947964547 0.4064327930757671 0.07178443797646314 0.037723289302303877 8 98.70969498257567 1.0745628036052315 0.11854964971462849 0.09719256410447537 9 98.2622980677833 1.0519417933535065 0.3341946385613037 0.35156550030188355 10 66.12717609743498 23.593357200983785 4.044137544816661 6.235329156764573 11 36.42744246145111 25.45265516538454 19.434623821997928 18.685278551166423 12 31.199979777205733 17.088325970702225 26.8483520529215 24.86334219917054 13 24.384995334821742 17.02989376227263 30.219595563559693 28.365515339345944 14 25.94532650900449 16.63269734157758 30.86646571345143 26.5555104359665 15 26.38267684331256 16.39115810174075 28.713256657398965 28.512908397547726 16 31.602296713115358 17.149772153277112 25.73548261017939 25.512448523428137 17 32.48996071138864 17.4474426105294 23.115593686469555 26.9470029916124 18 30.757703377627948 19.16433839864637 23.488419047409163 26.589539176316517 19 32.14374258457033 19.007708968063866 21.716364291601025 27.132184155764776 20 30.30602856404873 20.598601191913346 22.56218914340586 26.53318110063206 21 32.33958608736571 18.81867121333849 24.32293339408814 24.51880930520766 22 32.897819470726695 17.70926946127967 24.000600202163124 25.39231086583051 23 32.58135218547154 19.133842165627925 23.031656126939517 25.253149521961017 24 32.65368756495843 18.66456963203913 22.150214526901664 26.531528276100776 25 30.17150161053167 18.68479242630428 22.67474325315406 28.468962710009993 26 29.243229982107366 18.445294910888453 22.7923206531444 29.51915445385978 27 28.41694734976068 18.101053691842857 22.99017347203664 30.491825486359826 28 31.10800495328826 19.866075841311993 21.049854697278704 27.97606450812104 29 31.240749448977468 20.660954807564234 21.078147164255434 27.020148579202864 30 31.181020907582152 18.759623246750174 22.502201335417404 27.557154510250264 31 32.89198597238098 20.13162964933869 20.530349261268455 26.446035117011874 32 35.55737618318741 19.815486447324968 19.819180996277254 24.80795637321037 33 34.92654815374638 19.173315504433944 21.7844541806252 24.115682161194467 34 31.314737652995646 21.32315409477555 24.056666602930296 23.305441649298505 35 30.2447768314187 23.53437405104376 24.04418939813529 22.17665971940225 36 31.344261636289804 23.2333979447289 20.829186418189884 24.59315400079141 37 31.416240524211126 24.175799602479497 20.000570386504915 24.407389486804465 38 32.54816606154924 22.747564757503095 20.717863824759117 23.98640535618855 39 32.50062305003165 21.641306612886133 20.138435397408696 25.719634939673526 40 29.9421803088967 21.329732984576555 21.092504051850728 27.635582654676018 41 27.567784440569127 22.077814330766486 21.999029694775164 28.355371533889222 42 27.18627364875923 19.95257365844932 22.041970724264466 30.819181968526983 43 27.376251244884752 18.72890015546273 24.926992147787143 28.967856451865376 44 27.908428335634866 18.581183014019516 24.19378622237879 29.316602427966824 45 29.02670996850883 19.06046971976846 23.89909733094765 28.013722980775057 46 28.873094512071614 21.000885719498825 22.93423670456604 27.191783063863518 47 27.321448768759154 20.828570660031172 23.81503013812104 28.03495043308864 48 29.174880826490046 20.380104270542095 24.363735474184015 26.081279428783844 49 29.307009564020536 20.013079999624065 24.047170963956436 26.632739472398963 50 26.965670186318697 20.4480645262697 23.67846146018297 28.90780382722863 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 7.0 6 14.0 7 16.0 8 18.0 9 17.0 10 16.0 11 239.0 12 462.0 13 923.5 14 1385.0 15 1828.5 16 2272.0 17 2242.5 18 2213.0 19 2623.5 20 3034.0 21 3243.0 22 3452.0 23 3973.5 24 4495.0 25 4782.0 26 5069.0 27 6358.5 28 7648.0 29 9298.5 30 10949.0 31 12695.5 32 14442.0 33 17099.0 34 19756.0 35 22553.5 36 25351.0 37 28947.5 38 32544.0 39 37583.0 40 42622.0 41 45600.5 42 48579.0 43 52840.0 44 57101.0 45 64969.5 46 72838.0 47 80849.0 48 88860.0 49 99473.5 50 110087.0 51 119972.0 52 129857.0 53 143260.0 54 156663.0 55 180365.0 56 204067.0 57 244964.0 58 285861.0 59 301835.5 60 317810.0 61 321093.0 62 324376.0 63 327832.0 64 331288.0 65 284947.5 66 238607.0 67 203869.5 68 169132.0 69 144158.5 70 119185.0 71 104804.0 72 90423.0 73 74785.5 74 59148.0 75 63683.0 76 68218.0 77 46846.0 78 25474.0 79 16388.0 80 7302.0 81 5208.5 82 3115.0 83 2207.0 84 1299.0 85 810.0 86 321.0 87 230.0 88 139.0 89 99.5 90 60.0 91 48.5 92 37.0 93 37.5 94 38.0 95 19.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3085627.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.306563831372406 #Duplication Level Percentage of deduplicated Percentage of total 1 74.09298661001458 9.8592305578318 2 8.655947004204997 2.3036182266486107 3 3.0323942906255983 1.2105224457029629 4 1.5181799134017175 0.8080703170074954 5 0.8664216493527362 0.5764547490997572 6 0.5563440529988867 0.44418165920604713 7 0.42445727734241323 0.39536474982531533 8 0.3700704787702018 0.39394931582897896 9 0.3053626905703463 0.36569953204145406 >10 7.252419945313073 25.5283088334129 >50 1.873639026542912 16.973525622357652 >100 0.9669327436372882 24.449757376271855 >500 0.05217437898335091 4.723477633718448 >1k 0.02950046662142738 7.649563622410535 >5k 0.0021942495834119543 1.9610297775735697 >10k+ 9.752220370719796E-4 2.357245581062676 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTGGTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 19969 0.6471618248090258 No Hit GTGGTAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 19313 0.6259019641713014 No Hit GTGGTAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 19063 0.6177998831355831 No Hit GTGGTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 14315 0.4639251601052234 No Hit GTGGTAGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 9995 0.3239211998080131 No Hit GTGGTAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 8696 0.28182278674642136 No Hit GTGGTAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 6606 0.21408938928781734 No Hit GTGGTAGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 6307 0.20439930036909842 No Hit GTGGTAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 6093 0.19746391900252364 No Hit GTGGTAGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 6046 0.1959407277678086 No Hit GTGGTAGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 5955 0.1929915702708072 No Hit GTGGTAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 5581 0.1808708570413728 No Hit GTGGTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 5168 0.16748621917036635 No Hit GTGGTAGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCG 4983 0.1614906792039349 No Hit GTGGTAGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAG 4965 0.1609073293693632 No Hit GTGGTAGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAA 4539 0.1471013832844994 No Hit GTGGTAGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCA 4459 0.14450871735306958 No Hit GTGGTAGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTA 4332 0.14039286018692473 No Hit GTGGTAGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAA 3895 0.12623042253648936 No Hit GTGGTAGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 3850 0.12477204795006006 No Hit GTGGTAGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTT 3821 0.12383220654991675 No Hit GTGGTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGA 3625 0.11748017501791369 No Hit GTGGTAGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCG 3473 0.11255410974819705 No Hit GTGGTAGGGGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 3432 0.11122536845833927 No Hit GTGGTAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG 3372 0.10928086900976688 No Hit GTGGTAGGGGTATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3309 0.1072391445887659 No Hit GTGGTAGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTC 3294 0.10675301972662282 No Hit GTGGTAGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCAT 3290 0.10662338643005133 No Hit GTGGTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 3114 0.10091952138090574 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0373343894125894 0.0 0.0 0.0 0.0 7 0.039214072212876025 0.0 0.0 0.0 0.0 8 0.03960297210259049 0.0 0.0 0.0 0.0 9 0.040218730261305076 0.0 0.0 0.0 0.0 10 0.04725133660030846 0.0 0.0 0.0 0.0 11 0.06556203974103156 0.0 0.0 0.0 0.0 12 0.07334003753532102 0.0 0.0 0.0 0.0 13 0.07959484409489546 0.0 0.0 0.0 0.0 14 0.08834509161347111 0.0 0.0 0.0 0.0 15 0.09528047298004587 0.0 0.0 0.0 0.0 16 0.10253993758804937 0.0 0.0 0.0 0.0 17 0.1089243774441953 0.0 0.0 0.0 0.0 18 0.11540604227276985 0.0 0.0 0.0 0.0 19 0.12318404006705931 0.0 0.0 0.0 0.0 20 0.12992497148877682 0.0 0.0 0.0 0.0 21 0.13530475329649372 0.0 0.0 0.0 0.0 22 0.14039286018692473 0.0 0.0 0.0 0.0 23 0.14619395020849896 0.0 0.0 0.0 0.0 24 0.15293488163021648 0.0 0.0 0.0 0.0 25 0.15912487154150518 0.0 0.0 0.0 0.0 26 0.16560653637007972 0.0 0.0 0.0 0.0 27 0.17283359265394035 0.0 0.0 0.0 0.0 28 0.18605618890423242 0.0 0.0 0.0 0.0 29 0.19237581211209262 0.0 0.0 0.0 0.0 30 0.20076956806509666 0.0 0.0 0.0 0.0 31 0.20793180770067154 0.0 0.0 0.0 0.0 32 0.2188858212609625 0.0 0.0 0.0 0.0 33 0.22494617787567972 0.0 0.0 0.0 0.0 34 0.23314548388382653 0.0 0.0 0.0 0.0 35 0.24766441309983353 0.0 0.0 0.0 0.0 36 0.25787303520483845 0.0 0.0 0.0 0.0 37 0.2671742242338429 0.0 0.0 0.0 0.0 38 0.27466054711084653 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATTCG 25 4.4445907E-5 44.0 37 TAGGGGG 74795 0.0 42.3793 5 TGGTAGG 316215 0.0 42.20919 2 GTAGGGG 206865 0.0 42.185677 4 GTAGGGA 74015 0.0 42.151184 4 TAGGGGA 60380 0.0 42.138126 5 GGTAGGG 312100 0.0 42.132008 3 TAGGGAT 21775 0.0 42.100574 5 GTGGTAG 321260 0.0 42.03256 1 AGGGGGG 29220 0.0 41.914444 6 TAGGGGT 30225 0.0 41.743587 5 TAGGGGC 42020 0.0 41.67016 5 TAGGGAG 29265 0.0 41.586876 5 AGGGGGT 14990 0.0 41.21147 6 GTAGGGC 19840 0.0 41.072582 4 AGGGGAG 30110 0.0 40.9824 6 AGGGATC 6460 0.0 40.934986 6 TAGGGAA 11655 0.0 40.847706 5 AGGGATA 2935 0.0 40.776833 6 TAGGGCA 6535 0.0 40.73451 5 >>END_MODULE