##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527558_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2092611 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.060163116795238 31.0 31.0 33.0 28.0 33.0 2 29.05371089036615 31.0 28.0 31.0 25.0 33.0 3 31.23556552077763 31.0 31.0 33.0 30.0 33.0 4 35.58376210389795 35.0 35.0 37.0 35.0 37.0 5 35.981740036729235 37.0 35.0 37.0 35.0 37.0 6 36.2265088924793 37.0 37.0 37.0 35.0 37.0 7 36.47610138721435 37.0 37.0 37.0 35.0 37.0 8 36.345719295177176 37.0 37.0 37.0 35.0 37.0 9 33.629120749150225 35.0 33.0 35.0 30.0 35.0 10 30.37636187518846 34.0 26.0 35.0 20.0 37.0 11 30.898313159970964 33.0 26.0 35.0 21.0 39.0 12 32.79133149926097 35.0 32.0 35.0 24.0 39.0 13 33.25772396302992 35.0 33.0 35.0 27.0 39.0 14 33.95574380522706 35.0 33.0 35.0 29.0 40.0 15 34.06813593161844 35.0 34.0 35.0 29.0 40.0 16 34.25036855870489 35.0 34.0 35.0 30.0 40.0 17 34.323967521914014 35.0 34.0 35.0 31.0 40.0 18 34.157794735858694 35.0 34.0 35.0 30.0 40.0 19 34.105496434836674 35.0 34.0 35.0 30.0 40.0 20 34.040335733683904 35.0 33.0 35.0 29.0 40.0 21 33.94038595802086 35.0 33.0 36.0 29.0 39.0 22 33.5900604555744 35.0 33.0 35.0 29.0 37.0 23 32.96316706736226 35.0 33.0 35.0 27.0 36.0 24 32.7171194264008 34.0 33.0 35.0 27.0 35.0 25 32.54253322762807 34.0 33.0 35.0 25.0 35.0 26 31.837283183544386 34.0 32.0 35.0 23.0 35.0 27 31.671943328215324 34.0 31.0 35.0 22.0 35.0 28 31.304287801220582 34.0 31.0 35.0 21.0 35.0 29 30.801575161365395 33.0 30.0 35.0 21.0 35.0 30 30.033565244567672 33.0 27.0 35.0 18.0 35.0 31 29.934319374217186 33.0 27.0 35.0 18.0 35.0 32 29.789876857189416 33.0 27.0 35.0 18.0 35.0 33 29.310204333246837 33.0 25.0 35.0 15.0 35.0 34 28.751594539071046 33.0 24.0 35.0 15.0 35.0 35 28.131903158303192 33.0 23.0 35.0 10.0 35.0 36 27.29350509961001 32.0 21.0 35.0 9.0 35.0 37 26.41973830778869 32.0 18.0 34.0 8.0 35.0 38 25.570273691574783 31.0 17.0 34.0 8.0 35.0 39 24.64053519741605 30.0 15.0 34.0 8.0 35.0 40 24.314440667663508 29.0 15.0 34.0 8.0 35.0 41 23.994959885043134 29.0 12.0 34.0 8.0 35.0 42 23.805955335224752 29.0 12.0 33.0 8.0 35.0 43 23.647769222277816 27.0 10.0 33.0 8.0 35.0 44 23.378340742737183 27.0 10.0 33.0 8.0 35.0 45 23.226370787499445 25.0 10.0 33.0 8.0 35.0 46 23.10061019463245 25.0 10.0 33.0 8.0 35.0 47 22.88224615086129 24.0 10.0 33.0 8.0 35.0 48 22.465253217153116 23.0 10.0 33.0 8.0 35.0 49 21.643092289966937 23.0 10.0 31.0 8.0 35.0 50 21.773410347169158 24.0 9.0 32.0 8.0 34.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 15.0 11 57.0 12 100.0 13 200.0 14 492.0 15 1349.0 16 3331.0 17 6491.0 18 10938.0 19 15810.0 20 21642.0 21 30380.0 22 41190.0 23 55115.0 24 74204.0 25 98995.0 26 128534.0 27 148444.0 28 143495.0 29 128762.0 30 140613.0 31 203358.0 32 296930.0 33 284923.0 34 147512.0 35 54710.0 36 46074.0 37 8820.0 38 124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 98.59319290589603 1.0482120183827763 0.19798232925278517 0.16061274646840717 8 94.31279869980612 4.450612177800843 0.6862718393432893 0.5503172830497403 9 76.95730357911718 18.434434302409763 2.7524465846734056 1.855815533799641 10 30.785129199836952 50.452855308511715 6.399756094180906 12.362259397470433 11 19.37880475635462 60.07447155730329 10.3124278712097 10.234295815132386 12 31.606925510761435 45.499808612303006 13.487456579364249 9.405809297571311 13 19.51442480231634 45.84984978096741 21.517711605262516 13.11801381145373 14 26.959669045035128 46.315822673205865 14.413811262580575 12.310697019178434 15 19.402746138675557 46.04969581064039 15.478892159125609 19.06866589155844 16 22.215882454980882 50.40626279800689 15.290132757593264 12.087721989418961 17 26.5899873411733 45.23640561958243 13.211533342795198 14.962073696449076 18 21.271559788226288 48.181721304150656 18.435198897453947 12.111520010169114 19 26.00550221708669 44.94351793047059 15.735127073306984 13.315852779135732 20 19.58113571992119 42.044555820455884 19.519490244484043 18.854818215138884 21 19.981210076789235 42.004701303777914 24.312975512410095 13.701113107022758 22 16.27086926332701 45.779937121615056 21.659926283480303 16.28926733157763 23 16.980604613088623 53.39090734016021 18.194972692010126 11.433515354741038 24 20.275818104750478 53.240951137120085 16.650060618050848 9.833170140078591 25 28.92625528586058 49.36316400898208 10.815722559042268 10.89485814611507 26 31.327848319635137 47.404414867359485 10.268415868978993 10.999320944026387 27 35.49250195091204 42.14242398611113 10.673268944873175 11.691805118103652 28 36.41751859280105 42.45695927241135 9.865330919124482 11.260191215663113 29 34.90366819251165 43.91150576958642 10.217474724160391 10.967351313741542 30 29.1811999459049 48.77743641794868 10.234486963893433 11.806876672252988 31 24.965175085097037 53.01353189866631 10.987374146461049 11.033918869775604 32 21.611231136603983 55.99750742015597 11.696392688368741 10.694868754871306 33 19.635183032106777 57.39838890266753 11.690514863966595 11.275913201259097 34 17.82667681666588 58.31915248462328 12.27241947977909 11.581751218931755 35 19.671740232656713 57.14635926122915 11.945316162440129 11.236584343674004 36 21.06468904158489 54.5130461418773 12.346776347825754 12.075488468712054 37 22.72978589905147 51.9719145125396 12.78398135152687 12.514318236882058 38 23.895124320764825 49.81991397350009 12.438145455605461 13.846816250129624 39 24.950791140828372 47.25895066020392 13.19332642330562 14.596931775662082 40 25.095060668227397 47.148944548222296 13.54465784610709 14.211336937443223 41 24.597643804796974 47.29144594958164 13.752102039031621 14.358808206589757 42 23.9754068004039 47.83751017269813 13.584894660307148 14.602188366590829 43 23.544079621104927 47.793593744847946 13.770882404804333 14.891444229242797 44 23.664312191802487 47.24026586881174 13.669525774260002 15.425896165125769 45 23.725957667239637 46.762537327768996 14.017464306552915 15.494040698438457 46 23.39479243872846 46.37225934490453 14.113803282119802 16.119144934247213 47 22.24942906254435 46.13791096386285 14.85087290471091 16.76178706888189 48 21.56588109304596 45.612920891651626 15.607344126548126 17.213853888754286 49 19.932371568342134 46.09676619304782 15.877532900285814 18.093329338324228 50 20.102016093769937 42.9340665799807 18.611963714230694 18.351953612018672 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 156.0 6 312.0 7 1409.0 8 2506.0 9 6199.5 10 9893.0 11 11266.0 12 12639.0 13 9829.0 14 7019.0 15 7391.5 16 7764.0 17 10107.0 18 12450.0 19 16488.5 20 20527.0 21 27384.0 22 34241.0 23 44594.5 24 54948.0 25 66784.5 26 78621.0 27 88625.5 28 98630.0 29 102735.5 30 106841.0 31 107420.0 32 107999.0 33 116326.0 34 124653.0 35 148381.0 36 172109.0 37 174461.0 38 176813.0 39 147954.0 40 119095.0 41 100572.5 42 82050.0 43 77642.5 44 73235.0 45 74719.5 46 76204.0 47 71760.0 48 67316.0 49 62703.0 50 58090.0 51 61753.5 52 65417.0 53 70804.0 54 76191.0 55 80335.5 56 84480.0 57 85607.5 58 86735.0 59 78160.5 60 69586.0 61 62019.5 62 54453.0 63 47535.5 64 40618.0 65 36527.0 66 32436.0 67 27953.0 68 23470.0 69 21126.5 70 18783.0 71 16269.5 72 13756.0 73 11028.0 74 8300.0 75 8832.5 76 9365.0 77 6605.0 78 3845.0 79 2298.5 80 752.0 81 571.5 82 391.0 83 221.0 84 51.0 85 36.5 86 22.0 87 12.0 88 2.0 89 2.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2092611.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.846660630080976 #Duplication Level Percentage of deduplicated Percentage of total 1 84.61396871368866 29.48514252330198 2 7.03942791111806 4.906011108973017 3 2.451482597457598 2.5627794634246297 4 1.1795812958756526 1.6441787641188002 5 0.7264777952618664 1.2657662593389853 6 0.4955830545040612 1.0361648708593165 7 0.37199446866746044 0.90739355041456 8 0.27274623206902515 0.7603436309634102 9 0.2438438383523913 0.7647429133621892 >10 2.0355615034751406 15.31769154011777 >50 0.35203537891274156 8.427660109564188 >100 0.19094570426868157 12.788774214130965 >500 0.015038294199018172 3.512520413414636 >1k 0.008967790118680562 5.368563488109555 >5k 0.001241694016432693 2.914592430200092 >10k+ 0.0011037280146068383 8.337674719705907 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TAAGGGGGGGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAA 39511 1.8881196744163153 No Hit TAAGGGGGGGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAA 32993 1.5766427682928168 No Hit TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAA 24480 1.1698304175979195 No Hit TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAA 22040 1.0532296733602184 No Hit TAAGGGGGGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAA 14892 0.7116468373720678 No Hit TAAGGGGGGAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAA 14621 0.6986965088112411 No Hit TAAGGGGGGAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAA 12672 0.6055592749918642 No Hit TAAGGGGGGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAA 12216 0.5837683162326873 No Hit TAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7966 0.38067275762193736 No Hit TAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7745 0.3701117885741784 No Hit TAAGGGGGGGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAA 7443 0.3556800571152498 No Hit TAAGGGGGGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAA 6828 0.32629093510451773 No Hit TAAGGGGGGGCAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAA 6790 0.3244750218745863 No Hit TAAGGGGGGGCAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAA 6711 0.32069983384393946 No Hit TAAGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 5951 0.28438156924531127 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAA 5879 0.2809408915464938 No Hit TAAGGGGGGGAGTGCAGTGCTTAAGGGGAAAAAAAAAAAAAAAAAAAAAA 5311 0.25379776747804533 No Hit TAAGGGGGGGAGTGCAGTGCTTAAGGGGGGTAAAAAAAAAAAAAAAAAAA 4821 0.23038204424998243 No Hit TAAGGGGGGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA 4526 0.21628482312288333 No Hit TAAGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 4304 0.20567606688486295 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGAAAAAAAAAAAAAAAAAAAA 3624 0.173180777507143 No Hit TAAGGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 3216 0.153683603880511 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGGGTAAAAAAAAAAAAAAAAA 2976 0.1422146782177863 No Hit TAAGGGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 2756 0.13170149636028866 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTAAGGGGGGA 2532 0.1209971657417456 No Hit TAAGGGGGAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAA 2418 0.11554942605195137 No Hit TAAGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 2383 0.11387687439280401 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 2286 0.10924151693745279 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.02647410340478952 0.0 0.0 0.0 0.0 8 0.08644702718278743 0.0 0.0 0.0 0.0 9 0.20983355243760068 0.0 0.0 0.0 0.0 10 0.5022433696468193 0.0 0.0 0.0 0.0 11 0.868341034239044 0.0 0.0 0.0 0.0 12 1.0771710556811562 0.0 0.0 0.0 0.0 13 1.2202936905139081 0.0 0.0 0.0 0.0 14 1.3871665589065527 0.0 0.0 0.0 0.0 15 1.5495952186048911 0.0 0.0 0.0 0.0 16 1.7315688391201232 0.0 0.0 0.0 0.0 17 1.8890754182215423 0.0 0.0 0.0 0.0 18 2.066365894091162 0.0 0.0 0.0 0.0 19 2.2572279319950055 0.0 0.0 0.0 0.0 20 2.45908102365896 0.0 0.0 0.0 0.0 21 2.6702048302336174 0.0 0.0 0.0 0.0 22 2.9121035873365857 0.0 0.0 0.0 0.0 23 3.1916586503655004 0.0 0.0 0.0 0.0 24 3.4868401246098775 0.0 0.0 0.0 0.0 25 3.754496177263715 0.0 0.0 0.0 4.7787190261352925E-5 26 4.0140284075731225 0.0 0.0 0.0 4.7787190261352925E-5 27 4.258412098569681 0.0 0.0 0.0 4.7787190261352925E-5 28 4.481148192377848 0.0 0.0 0.0 4.7787190261352925E-5 29 4.660971389331318 0.0 0.0 0.0 4.7787190261352925E-5 30 4.85245466070856 0.0 0.0 0.0 4.7787190261352925E-5 31 5.033902622130917 0.0 0.0 0.0 4.7787190261352925E-5 32 5.207131186828321 0.0 0.0 0.0 4.7787190261352925E-5 33 5.384851747410293 0.0 0.0 0.0 4.7787190261352925E-5 34 5.566873155115786 0.0 0.0 0.0 4.7787190261352925E-5 35 5.758165277731981 0.0 0.0 0.0 4.7787190261352925E-5 36 5.923222232894695 0.0 0.0 0.0 4.7787190261352925E-5 37 6.09401365088877 0.0 0.0 0.0 4.7787190261352925E-5 38 6.261937837467165 0.0 0.0 0.0 4.7787190261352925E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTCA 30 2.5287172E-6 44.0 27 GATCGTT 30 2.5287172E-6 44.0 9 CGGCATC 25 4.4440963E-5 44.0 37 TACGGAC 60 0.0 44.0 13 ATCGTTC 55 1.8189894E-12 44.0 22 CGTTAAC 25 4.4440963E-5 44.0 12 CTACGTT 20 7.857965E-4 44.0 31 ACCGTAG 25 4.4440963E-5 44.0 34 ATCGGGT 20 7.857965E-4 44.0 20 CACCGTA 25 4.4440963E-5 44.0 33 CGCAACC 20 7.857965E-4 44.0 27 CAATCGT 20 7.857965E-4 44.0 11 CTAGGCG 20 7.857965E-4 44.0 28 ATCGATT 20 7.857965E-4 44.0 29 CTAATAT 20 7.857965E-4 44.0 22 TGCAACG 25 4.4440963E-5 44.0 13 CCCGATA 20 7.857965E-4 44.0 43 TTGCGAC 135 0.0 40.74074 13 CATTAGC 60 3.6379788E-12 40.333332 32 CGCTAAT 60 3.6379788E-12 40.333332 44 >>END_MODULE