##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527547_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3872939 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.378102521108648 31.0 31.0 33.0 26.0 34.0 2 31.42361653514295 31.0 31.0 34.0 28.0 34.0 3 31.256110153038815 31.0 31.0 34.0 28.0 34.0 4 35.83627214371308 37.0 35.0 37.0 35.0 37.0 5 34.757545884404585 35.0 35.0 37.0 32.0 37.0 6 35.61596477507133 37.0 35.0 37.0 35.0 37.0 7 36.23791027950608 37.0 35.0 37.0 35.0 37.0 8 36.426633365513894 37.0 37.0 37.0 35.0 37.0 9 38.45539782578553 39.0 39.0 39.0 37.0 39.0 10 36.88261601848105 39.0 37.0 39.0 32.0 39.0 11 36.80922988975556 39.0 37.0 39.0 32.0 39.0 12 36.65493621252491 39.0 35.0 39.0 32.0 39.0 13 36.61089911305084 39.0 35.0 39.0 32.0 39.0 14 37.39822754760661 40.0 37.0 40.0 33.0 40.0 15 37.59880726239169 40.0 37.0 40.0 33.0 40.0 16 37.57874291332758 40.0 37.0 40.0 33.0 40.0 17 37.61747293205496 40.0 37.0 40.0 33.0 40.0 18 37.55632479623356 40.0 37.0 40.0 33.0 40.0 19 37.360935971364384 40.0 36.0 40.0 32.0 40.0 20 37.321495381156275 39.0 36.0 40.0 32.0 40.0 21 37.39775503822808 39.0 36.0 40.0 32.0 40.0 22 37.38475638268509 39.0 36.0 40.0 32.0 40.0 23 37.29332401052534 39.0 36.0 40.0 32.0 40.0 24 37.21221274076354 39.0 36.0 40.0 32.0 40.0 25 37.04712364434348 39.0 36.0 40.0 32.0 40.0 26 36.771150797882434 39.0 35.0 40.0 32.0 40.0 27 36.598482186267326 38.0 35.0 40.0 31.0 40.0 28 36.35947738913523 38.0 35.0 40.0 31.0 40.0 29 36.29945475516139 38.0 35.0 40.0 31.0 40.0 30 36.08277460605499 38.0 35.0 40.0 30.0 40.0 31 35.96089687960487 38.0 35.0 40.0 30.0 40.0 32 35.74228951191847 38.0 35.0 40.0 30.0 40.0 33 35.559151848247545 38.0 35.0 40.0 29.0 40.0 34 35.15231404367587 38.0 34.0 40.0 26.0 40.0 35 34.949423680569204 38.0 34.0 40.0 26.0 40.0 36 34.75004899380031 38.0 34.0 40.0 25.0 40.0 37 34.39277096799098 37.0 33.0 40.0 23.0 40.0 38 34.129019073112175 37.0 33.0 40.0 22.0 40.0 39 33.764295280664115 37.0 33.0 40.0 21.0 40.0 40 33.66873400278187 37.0 33.0 40.0 18.0 40.0 41 33.63443008010196 37.0 33.0 40.0 17.0 40.0 42 33.57264341111492 37.0 33.0 40.0 16.0 40.0 43 33.447669844528924 37.0 33.0 40.0 15.0 40.0 44 33.28203697502078 37.0 33.0 40.0 15.0 40.0 45 33.19015378243758 36.0 33.0 40.0 15.0 40.0 46 32.89278658920267 36.0 33.0 40.0 13.0 40.0 47 32.81585483272522 35.0 33.0 40.0 13.0 40.0 48 32.66362780307152 35.0 32.0 39.0 13.0 40.0 49 32.46407366601953 35.0 32.0 39.0 12.0 40.0 50 32.23743802832939 35.0 32.0 39.0 11.0 40.0 51 32.078389305899215 35.0 32.0 39.0 10.0 40.0 52 31.577033875307617 35.0 31.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 6.0 11 30.0 12 43.0 13 93.0 14 141.0 15 357.0 16 728.0 17 1459.0 18 2766.0 19 4870.0 20 7956.0 21 12053.0 22 18008.0 23 25775.0 24 35908.0 25 49266.0 26 66510.0 27 88901.0 28 107075.0 29 108534.0 30 99153.0 31 104323.0 32 127663.0 33 171775.0 34 278606.0 35 292234.0 36 450558.0 37 692561.0 38 983261.0 39 142324.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 0.0 100.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.47804496791713 0.2920262880463648 0.1489308248851841 0.08099791915132151 8 98.87886176363739 0.7084025852201649 0.27586285247456777 0.13687279866788504 9 96.80937396638573 1.645287984138144 0.7394900875020236 0.8058479619740978 10 58.99641073613604 27.858249252053803 5.516095141183479 7.629244870626674 11 34.69272301990814 29.95174982100157 17.73616883715442 17.619358321935874 12 30.018494998242932 24.270870261576544 23.273281608618156 22.43735313156236 13 22.874643778277942 25.22438385938947 25.100085490631272 26.800886871701312 14 23.911608212781044 27.67624277067106 25.636267444439483 22.775881572108418 15 26.46661876161747 25.115241939002914 23.830507012891246 24.587632286488375 16 27.335855276832397 26.06547637336917 23.41376923313277 23.184899116665665 17 30.07829454582166 26.213064548654135 19.70854692005219 24.000093985472017 18 28.907555734805012 25.817964083606793 20.269671172202816 25.004809009385383 19 27.701417450675052 26.742946377415187 21.58577762262716 23.9698585492826 20 26.961643341142217 29.61045862070123 20.284646879282118 23.14325115887444 21 28.453043024948236 26.32902299778024 23.11002058126916 22.107913396002363 22 28.261353974333186 26.65319541567786 20.444448001892106 24.641002608096848 23 27.827987995679766 28.957621072782196 19.685954258510137 23.5284366730279 24 27.284059986485715 28.78516805970866 19.58894782489474 24.341824128910886 25 26.473332009618534 26.31799777894772 19.989625449819894 27.21904476161385 26 28.023782455649314 26.28786562349678 19.626593654069946 26.061758266783958 27 26.56718838071036 25.118133799680294 19.798943386405004 28.515734433204344 28 28.72906079853052 29.077116887201164 17.96183725072871 24.2319850635396 29 30.123092566136467 27.391394493948912 18.852891821947104 23.632621117967517 30 27.889620776366474 28.30318267341675 19.335987476177653 24.47120907403912 31 31.14794733405303 27.242412028694485 18.464969368223976 23.144671269028507 32 31.240848358313933 26.312704641100726 20.333885971351474 22.11256102923387 33 32.24352358764236 26.64142141149138 19.128289911098523 21.986765089767747 34 27.834055739065345 29.382647131803523 20.96307223015906 21.820224898972075 35 27.9484907972989 31.697684884786465 20.425831648781458 19.927992669133182 36 30.061020842311226 30.08077328354513 17.466089706034616 22.392116168109023 37 29.093099581480626 29.926368579520616 19.138592164761697 21.84193967423706 38 31.850876040133862 28.247617636115624 18.62562255692641 21.275883766824112 39 30.784760617195367 25.8705856198613 18.49220966299753 24.852444099945803 40 29.250292865444045 26.142859466673755 20.227558451088438 24.379289216793758 41 29.020028459007484 25.343234169192957 19.76648741433831 25.870249957461244 42 29.26235089166134 23.525493171981278 20.7279019886448 26.484253947712578 43 27.637848156141885 23.85828953154181 22.592016037433073 25.91184627488323 44 27.81634309241638 22.925148059393656 22.16621537287316 27.092293475316808 45 27.971367480871763 24.52434701398602 21.750871883084137 25.75341362205808 46 27.935580704989153 24.251195280896496 22.86640713938433 24.94681687473002 47 28.70659723791157 24.92610908666519 21.496930367351514 24.870363308071724 48 29.121734166223632 23.974428721960248 22.43990932983969 24.463927781976427 49 28.93192998908581 23.549609224415878 22.738442304410164 24.780018482088153 50 26.02953467637884 24.663724370561997 22.501258088495586 26.80548286456358 51 25.654057551642307 25.458082350380423 22.347111586317265 26.540748511660006 52 27.59483172856583 24.402682304059013 22.494699761602234 25.50778620577293 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 141.0 6 282.0 7 321.0 8 360.0 9 527.5 10 695.0 11 7800.5 12 14906.0 13 13813.5 14 11652.0 15 10583.0 16 9819.0 17 9055.0 18 9886.5 19 10718.0 20 11843.5 21 12969.0 22 15239.0 23 17509.0 24 21380.5 25 25252.0 26 30495.5 27 35739.0 28 40924.0 29 46109.0 30 50648.5 31 55188.0 32 57756.5 33 60325.0 34 62931.5 35 65538.0 36 66551.0 37 67564.0 38 67881.0 39 69679.5 40 71161.0 41 76103.5 42 81046.0 43 83744.5 44 86443.0 45 90926.5 46 95410.0 47 104759.5 48 114109.0 49 118446.0 50 122783.0 51 133443.0 52 144103.0 53 173297.5 54 202492.0 55 224979.0 56 247466.0 57 278878.5 58 310291.0 59 339650.5 60 369010.0 61 349361.5 62 329713.0 63 334198.0 64 297404.5 65 256126.0 66 228638.0 67 201150.0 68 158375.0 69 115600.0 70 101254.5 71 86909.0 72 78485.0 73 70061.0 74 69283.5 75 68506.0 76 50017.0 77 31528.0 78 20939.5 79 10351.0 80 7341.0 81 4331.0 82 2852.0 83 1373.0 84 896.0 85 419.0 86 261.0 87 103.0 88 72.0 89 29.0 90 17.0 91 9.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3872939.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.93039256423434 #Duplication Level Percentage of deduplicated Percentage of total 1 78.89902758587503 14.146905375510938 2 8.26843282762354 2.965124929805844 3 2.782989375564703 1.4970027601790559 4 1.384231194270261 0.9927923485169884 5 0.833263574591284 0.7470371500949442 6 0.5373529139585828 0.5780969215687576 7 0.39499069141174087 0.4957636709361602 8 0.3366390193729524 0.482885581583674 9 0.25039019345386565 0.4040635016576153 >10 4.184224395007291 19.92331893644684 >50 1.399752742125094 17.157049597782137 >100 0.660122066721704 22.40075415925573 >500 0.0442753724205124 5.526821509441798 >1k 0.020546087855270463 6.385192160148693 >5k 0.0023150521527065307 2.786396803095629 >10k+ 0.0014469075954415818 3.5107945939750924 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGACATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 18663 0.48188210555343114 No Hit GGACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 15717 0.405815841664431 No Hit GGACATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 13893 0.35871982491849214 No Hit GGACATGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGGACATGGGAAG 13852 0.3576611973490933 No Hit GGACATGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCT 13411 0.3462744959319008 No Hit GGACATGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGA 13122 0.3388124625768699 No Hit GGACATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 12896 0.3329771008528665 No Hit GGACATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 12247 0.3162198010348214 No Hit GGACATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 10988 0.2837121885988909 No Hit GGACATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10535 0.2720156449662647 No Hit GGACATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 9987 0.2578661837947874 No Hit GGACATGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAA 9818 0.25350257259409453 No Hit GGACATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 7603 0.19631086366193734 No Hit GGACATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 7204 0.1860086099987632 No Hit GGACATGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAG 7122 0.18389135485996552 No Hit GGACATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGG 7036 0.18167081898268989 No Hit GGACATGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCGC 6479 0.16728897614963725 No Hit GGACATGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAG 6307 0.162847904395086 No Hit GGACATGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGCG 6246 0.16127287313329747 No Hit GGACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6101 0.15752894636347228 No Hit GGACATGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGCTG 6050 0.1562121169478786 No Hit GGACATGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 5740 0.14820785971583855 No Hit GGACATGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 5562 0.14361186685357036 No Hit GGACATGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCG 5539 0.14301800260732225 No Hit GGACATGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT 5372 0.1387060317758684 No Hit GGACATGGGGCTCTCAGCTCCTGAAGGCAAATCCCAATTCCAGAGCAAGGAA 5236 0.13519448666761857 No Hit GGACATGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGA 4747 0.12256841638869087 No Hit GGACATGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 4639 0.11977983644978658 No Hit GGACATGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTG 4578 0.11820480518799806 No Hit GGACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGAT 4381 0.1131182288179597 No Hit GGACATGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTC 4274 0.11035546906367491 No Hit GGACATGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTT 3989 0.10299671644712194 No Hit GGACATGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC 3976 0.10266105404706866 No Hit GGACATGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCAT 3884 0.1002855970620761 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0017041321848859485 0.0 0.0 0.0 0.0 8 0.004725093785365584 0.0 0.0 0.0 0.0 9 0.008804682955244067 0.0 0.0 0.0 0.0 10 0.051614549054348646 0.0 0.0 0.0 0.0 11 0.11546786561833275 0.0 0.0 0.0 0.0 12 0.1691738496268596 0.0 0.0 0.0 0.0 13 0.2122677377567785 0.0 0.0 0.0 0.0 14 0.25858914896413293 0.0 0.0 0.0 0.0 15 0.3032064279866014 0.0 0.0 0.0 0.0 16 0.35074138787107156 0.0 0.0 0.0 0.0 17 0.39207950344686554 0.0 0.0 0.0 0.0 18 0.4338565621611908 0.0 0.0 0.0 0.0 19 0.482037026661148 0.0 0.0 0.0 0.0 20 0.5360786730697282 0.0 0.0 0.0 0.0 21 0.5849046421851726 0.0 0.0 0.0 0.0 22 0.6441103255176495 0.0 0.0 0.0 0.0 23 0.7144703286057436 0.0 0.0 0.0 0.0 24 0.7843913885553064 0.0 0.0 0.0 0.0 25 0.8501295785965128 0.0 0.0 0.0 0.0 26 0.9134664914681073 0.0 0.0 0.0 0.0 27 0.9826387660637051 0.0 0.0 0.0 0.0 28 1.089637611126847 0.0 0.0 0.0 0.0 29 1.139289826150115 0.0 0.0 0.0 0.0 30 1.20058694443677 0.0 0.0 0.0 0.0 31 1.2336109605650902 2.5820184619484065E-5 0.0 0.0 0.0 32 1.2635107343544527 2.5820184619484065E-5 0.0 0.0 0.0 33 1.290931770420345 2.5820184619484065E-5 0.0 0.0 0.0 34 1.3210381056866634 2.5820184619484065E-5 0.0 0.0 0.0 35 1.3870861379433035 2.5820184619484065E-5 0.0 0.0 0.0 36 1.4158498236094088 2.5820184619484065E-5 0.0 0.0 0.0 37 1.4411536045365032 2.5820184619484065E-5 0.0 0.0 0.0 38 1.4645208716171363 2.5820184619484065E-5 0.0 0.0 0.0 39 1.487655757036194 2.5820184619484065E-5 0.0 0.0 0.0 40 1.5133726609172 2.5820184619484065E-5 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCAATT 25 3.418667E-5 46.0 44 ATGGGAT 22680 0.0 44.276012 5 ATGGGGC 47110 0.0 43.466145 5 ATGGGCT 10190 0.0 43.133465 5 ATGGGAG 38115 0.0 43.109535 5 ATGGGAC 14785 0.0 43.075417 5 ATGGGGT 36005 0.0 43.029575 5 CATGGGG 237975 0.0 42.985523 4 CGTGTAA 75 0.0 42.933334 30 TGGGATT 7795 0.0 42.84285 6 ACATGGG 399700 0.0 42.786217 3 GGACATG 414840 0.0 42.72165 1 GACATGG 411105 0.0 42.67844 2 ATGGGGG 87970 0.0 42.50438 5 TGGGATA 3200 0.0 42.334373 6 ATGGGGA 68435 0.0 42.279533 5 CATGGGA 112770 0.0 42.257427 4 TGGGGCT 21990 0.0 42.077763 6 ATGGGCG 4760 0.0 41.892857 5 TGGGATC 7350 0.0 41.681633 6 >>END_MODULE