##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527509_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 806837 Sequences flagged as poor quality 0 Sequence length 52 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69785470919157 33.0 31.0 33.0 30.0 34.0 2 32.2909447633165 34.0 31.0 34.0 31.0 34.0 3 32.82538976274018 34.0 31.0 34.0 31.0 34.0 4 36.21976186020225 37.0 37.0 37.0 35.0 37.0 5 36.17852800503695 37.0 37.0 37.0 35.0 37.0 6 34.141603570485735 35.0 35.0 37.0 31.0 37.0 7 35.768426584303896 37.0 35.0 37.0 35.0 37.0 8 36.46211440476825 37.0 37.0 37.0 35.0 37.0 9 38.62733612861086 39.0 39.0 39.0 39.0 39.0 10 37.76381102998499 39.0 38.0 39.0 35.0 39.0 11 37.537296876568625 39.0 37.0 39.0 35.0 39.0 12 37.28060934240745 39.0 37.0 39.0 35.0 39.0 13 37.2720326410415 39.0 37.0 39.0 35.0 39.0 14 37.98515437442755 40.0 38.0 40.0 34.0 40.0 15 38.08728156988339 40.0 38.0 40.0 34.0 40.0 16 38.25024757169044 40.0 38.0 40.0 35.0 40.0 17 38.189322006799394 40.0 38.0 40.0 35.0 40.0 18 38.03915041080169 40.0 38.0 40.0 34.0 40.0 19 37.91250277317476 40.0 37.0 40.0 34.0 40.0 20 37.75735247639858 40.0 37.0 40.0 33.0 40.0 21 37.720048783087535 40.0 37.0 40.0 33.0 40.0 22 37.69709495226421 40.0 37.0 40.0 33.0 40.0 23 37.55519392392763 40.0 36.0 40.0 33.0 40.0 24 37.47016311844896 39.0 36.0 40.0 33.0 40.0 25 37.44469700819372 39.0 36.0 40.0 33.0 40.0 26 37.382152776831006 39.0 36.0 40.0 33.0 40.0 27 37.32090992356573 39.0 35.0 40.0 33.0 40.0 28 37.196671694530615 39.0 35.0 40.0 33.0 40.0 29 37.063466350700324 39.0 35.0 40.0 33.0 40.0 30 36.854208470855944 39.0 35.0 40.0 32.0 40.0 31 36.75409903115499 39.0 35.0 40.0 32.0 40.0 32 36.569071572077135 38.0 35.0 40.0 32.0 40.0 33 36.32367380276314 38.0 35.0 40.0 31.0 40.0 34 35.86452777946475 38.0 34.0 40.0 30.0 40.0 35 35.66179166300009 38.0 34.0 40.0 30.0 40.0 36 35.47417260239677 37.0 34.0 40.0 29.0 40.0 37 35.237869606872266 37.0 34.0 40.0 29.0 40.0 38 35.41628730462287 37.0 34.0 40.0 29.0 40.0 39 35.25017568604316 36.0 34.0 40.0 29.0 40.0 40 34.91954136957031 36.0 34.0 39.0 28.0 40.0 41 34.73556121000896 35.0 33.0 39.0 28.0 40.0 42 34.6010396151887 35.0 33.0 39.0 28.0 40.0 43 34.53850653849538 35.0 33.0 39.0 28.0 40.0 44 34.344221943217775 35.0 33.0 39.0 27.0 40.0 45 34.14585845716049 35.0 33.0 38.0 27.0 40.0 46 34.0458915493464 35.0 33.0 38.0 27.0 40.0 47 33.80721384864601 35.0 33.0 38.0 26.0 40.0 48 33.54983348557391 35.0 33.0 37.0 26.0 40.0 49 33.408057637416235 35.0 33.0 37.0 26.0 40.0 50 33.86049846499355 35.0 33.0 37.0 28.0 40.0 51 33.88923041456948 35.0 33.0 37.0 28.0 40.0 52 33.55950954158027 35.0 33.0 36.0 27.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 5.0 12 13.0 13 16.0 14 33.0 15 63.0 16 74.0 17 132.0 18 247.0 19 378.0 20 650.0 21 879.0 22 1306.0 23 1931.0 24 2688.0 25 3583.0 26 4731.0 27 5944.0 28 7742.0 29 10335.0 30 14061.0 31 19743.0 32 27504.0 33 39457.0 34 72267.0 35 85907.0 36 133289.0 37 171778.0 38 177545.0 39 24533.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 0.0 0.0 100.0 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 99.32427491550338 0.5048107610335173 0.10745664861675902 0.06345767484634443 8 98.8648264767233 0.8841934616285568 0.14686981385335576 0.10411024779478384 9 98.09143606453348 1.0870845040572013 0.40826090028097367 0.41321853112834434 10 69.6141847733805 20.78970101767767 3.4042811621182474 6.191833046823584 11 37.19648454396613 26.843959808486723 17.563150921437664 18.396404726109488 12 32.79435623304335 17.31055962976413 25.92419534552828 23.970888791664237 13 26.89948527397727 16.9239883644404 27.739060057979493 28.437466303602832 14 26.02929711949254 17.385791677872977 29.95983079605918 26.625080406575307 15 27.46477913134871 17.066768132844675 28.27262507792776 27.19582765787885 16 31.86851867229688 17.429542770101026 24.008814667646625 26.693123889955466 17 33.9165159753457 18.23032409272257 20.82762689366006 27.02553303827167 18 31.824767580068837 18.84841671861851 22.31863437100678 27.008181330305874 19 33.12825267061377 19.32781962155925 21.25323950190683 26.290688205920155 20 30.795935238468243 21.3685044191082 21.754579921347187 26.080980421076376 21 33.416414963617186 19.052299287216627 22.787874130710417 24.74341161845577 22 32.02926985252287 18.871345761287593 23.339410562480403 25.759973823709124 23 31.64976321115665 18.59136355918234 22.63431151521311 27.124561714447896 24 31.01989621199821 19.13558748545245 22.210310136991733 27.6342061655576 25 30.512482694769822 19.628871754765832 21.95338091832675 27.905264632137595 26 28.88476854680685 18.94620598708289 21.863152036904605 30.305873429205647 27 28.513937759423523 18.722864717408843 24.02195238939216 28.74124513377547 28 30.883561363695517 18.998261110980287 20.909179921099305 29.208997604224894 29 31.196883633249346 20.51194974945373 20.575159542757707 27.716007074539217 30 30.99895022166807 19.30080053344108 22.624892016603106 27.075357228287743 31 32.15816825455452 19.03395605308135 21.919545087793445 26.888330604570687 32 33.02922399443754 19.993877325903497 21.528264073164717 25.448634606494245 33 35.21591102044155 19.568140776885542 20.557807834791912 24.658140367880996 34 31.23691650234186 21.326240616134363 23.77828483324389 23.658558048279886 35 32.671283047257376 22.87773118981901 22.89768565397968 21.553300108943937 36 31.757963504400514 22.66542064878036 20.977223404479467 24.599392442339653 37 30.683397018232927 23.573658620018666 20.011352974640477 25.731591387107926 38 33.31552717587319 21.599901838909222 20.47650268889503 24.608068296322553 39 31.745693368053274 21.964907410046884 20.13417827888409 26.15522094301575 40 31.860462522169907 20.604657446299562 20.58259598902876 26.952284042501766 41 28.360994847782138 21.07513661371504 22.655753268627986 27.908115269874834 42 28.025363239415146 20.22961267269597 22.678806252068263 29.066217835820616 43 27.96909412929749 18.64924389932539 25.26247556817548 28.119186403201642 44 28.661551217903984 18.37322780189803 24.308379511598996 28.656841468598987 45 28.996315240872693 19.443332420302987 23.621871580009348 27.938480758814976 46 29.088279293091418 21.132521190773353 22.03877610967271 27.740423406462522 47 28.019290141627117 20.925540102895628 24.053929108357696 27.001240647119555 48 29.81432433068885 20.376978249634064 24.500239825392242 25.308457594284846 49 29.440023201712368 20.29691251144903 22.693927026152743 27.56913726068586 50 28.283036102707236 21.039689553156336 22.894463193928885 27.782811150207536 51 27.011899553441403 21.969865040894256 22.279964850397292 28.738270555267047 52 28.65646964628543 20.914385433489045 23.165273778966508 27.263871141259017 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 8.0 10 16.0 11 13.0 12 10.0 13 16.0 14 84.5 15 147.0 16 420.0 17 693.0 18 737.0 19 781.0 20 906.5 21 1032.0 22 936.0 23 840.0 24 803.5 25 767.0 26 857.5 27 948.0 28 1002.0 29 1056.0 30 1271.5 31 1487.0 32 1547.0 33 1607.0 34 2343.5 35 3080.0 36 3615.0 37 4150.0 38 4076.5 39 6323.5 40 8644.0 41 8004.0 42 7364.0 43 9526.0 44 11688.0 45 12142.0 46 12596.0 47 12546.0 48 12496.0 49 14873.5 50 17251.0 51 19665.0 52 22079.0 53 23054.5 54 24030.0 55 27213.5 56 30397.0 57 32054.0 58 33711.0 59 40251.0 60 46791.0 61 58330.5 62 69870.0 63 76086.5 64 83183.0 65 84063.0 66 84071.0 67 84079.0 68 74548.0 69 65017.0 70 61727.0 71 58437.0 72 48430.0 73 38423.0 74 34164.5 75 29906.0 76 25082.0 77 20258.0 78 16863.0 79 13468.0 80 11385.0 81 9302.0 82 5884.5 83 2467.0 84 1767.5 85 1068.0 86 702.5 87 337.0 88 225.0 89 71.5 90 30.0 91 18.5 92 7.0 93 4.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 806837.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.281754555133194 #Duplication Level Percentage of deduplicated Percentage of total 1 67.95448244271128 6.986913093970654 2 9.743602107115734 2.0036265069648516 3 3.5825789264317662 1.10505591587892 4 1.6225273334378052 0.6672971120560907 5 0.853454199163422 0.4387503299923033 6 0.6232144363947587 0.3844642722135946 7 0.5038755017659751 0.3626506964851637 8 0.3773039044324168 0.3103476910454032 9 0.3471678098291886 0.32125447890961867 >10 9.837626722277806 27.718981653047642 >50 2.9822679219354606 20.92157399821773 >100 1.4814904106946973 28.542320196024722 >500 0.066299408127102 4.736396570806743 >1k 0.022903431898453414 4.699090398680279 >5k 0.0012054437841291271 0.8012770857062828 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGGCGAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 6465 0.8012770857062828 No Hit GGGCGAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 4051 0.5020840640674634 No Hit GGGCGAGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGCG 3472 0.43032235755177317 No Hit GGGCGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 3212 0.3980977570438639 No Hit GGGCGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 3070 0.38049816753569804 No Hit GGGCGAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 2626 0.3254684651298837 No Hit GGGCGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCT 2240 0.27762732745275687 No Hit GGGCGAGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGACC 2219 0.27502457125788726 No Hit GGGCGAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 2143 0.265605072647883 No Hit GGGCGAGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAG 1973 0.24453514154655775 No Hit GGGCGAGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC 1528 0.18938149836955914 No Hit GGGCGAGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 1514 0.18764632757297944 No Hit GGGCGAGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTT 1431 0.1773592435646853 No Hit GGGCGAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 1372 0.17004673806481357 No Hit GGGCGAGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCG 1314 0.16285817333612612 No Hit GGGCGAGGGGCGAACGGCGAGCAGCGGCGGCGGCGCGGGAAGTGCAGCGGAG 1301 0.16124694331073067 No Hit GGGCGAGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 1170 0.14501070228559176 No Hit GGGCGAGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAA 1141 0.14141641992124804 No Hit GGGCGAGGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTCGTGGTG 1092 0.13534332213321898 No Hit GGGCGAGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGCGT 1045 0.12951810588755847 No Hit GGGCGAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGG 995 0.12332106732834514 No Hit GGGCGAGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCAT 985 0.12208165961650247 No Hit GGGCGAGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTG 982 0.12170983730294967 No Hit GGGCGAGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 971 0.12034648881992273 No Hit GGGCGAGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGACCT 937 0.11613250259965768 No Hit GGGCGAGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGA 931 0.11538885797255206 No Hit GGGCGAGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAAGA 928 0.11501703565899929 No Hit GGGCGAGGGGCCTCTCCTTCCTGCGGCGCCTTAGGGACCATGGCCGATCCTC 910 0.11278610177768249 No Hit GGGCGAGGGGAGCATTCGCAGACTGCAGCTCCCAGACACCGCCCGCATCCCT 906 0.11229033869294541 No Hit GGGCGAGGGGGCGAACGGCGAGCAGCGGCGGCGGCGCGGGAAGTGCAGCGGA 900 0.11154669406583982 No Hit GGGCGAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGG 893 0.11067910866754994 No Hit GGGCGAGGGGGGCGGACCGCGCTGCTGGAGGTGTGAGGAGCTTAGACTCGGG 872 0.10807635247268034 No Hit GGGCGAGGGGAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTACTCGAA 871 0.1079524117014961 No Hit GGGCGAGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCGC 859 0.1064651224472849 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.18603509754758396 0.0 0.0 0.0 0.0 7 0.18690268294587384 0.0 0.0 0.0 0.0 8 0.18702662371705808 0.0 0.0 0.0 0.0 9 0.18727450525942663 0.0 0.0 0.0 0.0 10 0.19979252314903753 0.0 0.0 0.0 0.0 11 0.2284228412926031 0.0 0.0 0.0 0.0 12 0.237222636046686 0.0 0.0 0.0 0.0 13 0.24750972005498012 0.0 0.0 0.0 0.0 14 0.2597798564022225 0.0 0.0 0.0 0.0 15 0.2699429996393324 0.0 0.0 0.0 0.0 16 0.2801061428764422 0.0 0.0 0.0 0.0 17 0.2886580560881566 0.0 0.0 0.0 0.0 18 0.29795361392697656 0.0 0.0 0.0 0.0 19 0.30749705330816507 0.0 0.0 0.0 0.0 20 0.31716443346053785 0.0 0.0 0.0 0.0 21 0.32571634667225224 0.0 0.0 0.0 0.0 22 0.3337724967992296 0.0 0.0 0.0 0.0 23 0.33996953535844293 0.0 0.0 0.0 0.0 24 0.34790174471423596 0.0 0.0 0.0 0.0 25 0.3557100132988448 0.0 0.0 0.0 0.0 26 0.363270400341085 0.0 0.0 0.0 0.0 27 0.3720701950951679 0.0 0.0 0.0 0.0 28 0.38533185761188443 0.0 0.0 0.0 0.0 29 0.3949992377642572 0.0 0.0 0.0 0.0 30 0.4042947956030772 0.0 0.0 0.0 0.0 31 0.4117312418741332 0.0 0.0 0.0 0.0 32 0.419539510458742 0.0 0.0 0.0 0.0 33 0.42511684516203396 0.0 0.0 0.0 0.0 34 0.43329693606019554 0.0 0.0 0.0 0.0 35 0.44742618397520195 0.0 0.0 0.0 0.0 36 0.45882873492415444 0.0 0.0 0.0 0.0 37 0.4704791674154755 0.0 0.0 0.0 0.0 38 0.4791550213983741 0.0 0.0 0.0 0.0 39 0.48745905306771997 0.0 0.0 0.0 0.0 40 0.4940279139404861 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAA 20 6.31033E-4 46.0 27 AGCGTAT 30 1.8607079E-6 46.0 27 CTATGCA 20 6.31033E-4 46.0 40 ACCGGTA 20 6.31033E-4 46.0 37 ACACGCG 30 1.8607079E-6 46.0 12 CGTATGA 30 1.8607079E-6 46.0 29 CGAAATT 40 5.6079443E-9 46.0 20 CGAAACT 30 1.8607079E-6 46.0 34 ACGTTGT 20 6.31033E-4 46.0 37 GCGAATA 20 6.31033E-4 46.0 34 TAGGTTA 20 6.31033E-4 46.0 12 ATAGCCT 25 3.4162436E-5 46.0 37 CGCGAAT 25 3.4162436E-5 46.0 16 AAAACGC 20 6.31033E-4 46.0 35 CGTTAGG 50 1.6370905E-11 46.0 28 ATATCGG 25 3.4162436E-5 46.0 30 TTAAGTG 40 5.6079443E-9 46.0 41 GTTCGAA 25 3.4162436E-5 46.0 11 CGCTATT 20 6.31033E-4 46.0 38 CGAGGTA 30 1.8607079E-6 46.0 4 >>END_MODULE