##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527498_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1235912 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.373771757212488 31.0 31.0 33.0 30.0 33.0 2 30.172644977959596 31.0 30.0 33.0 26.0 33.0 3 31.495705195839186 31.0 31.0 33.0 30.0 34.0 4 35.52559162788289 35.0 35.0 37.0 35.0 37.0 5 34.55105865142502 35.0 35.0 37.0 32.0 37.0 6 35.58403834577219 36.0 35.0 37.0 35.0 37.0 7 36.424287489724186 37.0 36.0 37.0 35.0 37.0 8 36.693375418314574 37.0 37.0 37.0 35.0 37.0 9 38.67803775673349 39.0 39.0 39.0 39.0 39.0 10 36.939905915631535 39.0 37.0 39.0 33.0 39.0 11 37.2933072904867 39.0 37.0 39.0 34.0 39.0 12 37.164755257655884 39.0 37.0 39.0 34.0 39.0 13 37.19218682236276 39.0 37.0 39.0 34.0 39.0 14 37.872861498229646 40.0 38.0 40.0 34.0 40.0 15 37.91964233699487 40.0 38.0 40.0 34.0 40.0 16 38.0536801972956 40.0 38.0 40.0 34.0 40.0 17 37.98762533254795 40.0 38.0 40.0 34.0 40.0 18 37.868417816155194 40.0 37.0 40.0 34.0 40.0 19 37.84715254807786 40.0 37.0 40.0 34.0 40.0 20 37.66689861414081 39.0 37.0 40.0 33.0 40.0 21 37.57980341642447 39.0 37.0 40.0 33.0 40.0 22 37.45803584721242 39.0 36.0 40.0 34.0 40.0 23 37.262640058515494 38.0 36.0 40.0 33.0 40.0 24 37.163000278336966 38.0 36.0 40.0 33.0 40.0 25 36.99223973875163 38.0 36.0 40.0 33.0 40.0 26 36.41453436814272 38.0 35.0 40.0 32.0 40.0 27 36.33191602638376 38.0 35.0 39.0 32.0 40.0 28 36.22994598320916 38.0 35.0 39.0 32.0 40.0 29 35.925521396345374 37.0 34.0 39.0 31.0 40.0 30 35.60687815961007 37.0 34.0 38.0 31.0 40.0 31 35.51977567982186 37.0 34.0 38.0 31.0 40.0 32 35.42630705098745 37.0 34.0 38.0 31.0 40.0 33 34.98874596249571 36.0 34.0 38.0 30.0 40.0 34 34.47078109121038 36.0 33.0 38.0 29.0 39.0 35 34.35771478875519 35.0 33.0 38.0 29.0 39.0 36 34.16306905346012 35.0 33.0 38.0 29.0 39.0 37 33.93873107470435 35.0 32.0 38.0 29.0 39.0 38 33.44222970567484 35.0 31.0 37.0 27.0 38.0 39 32.728674047990474 34.0 31.0 37.0 25.0 38.0 40 32.57882276408029 34.0 31.0 37.0 25.0 38.0 41 32.28479373936008 34.0 30.0 36.0 25.0 38.0 42 31.945003365935438 33.0 30.0 36.0 24.0 38.0 43 31.46180634219912 33.0 29.0 36.0 24.0 38.0 44 31.12064936662157 33.0 29.0 35.0 23.0 38.0 45 30.743045621371103 33.0 28.0 35.0 23.0 37.0 46 30.564075759439184 32.0 28.0 35.0 23.0 37.0 47 30.197897584941323 32.0 27.0 35.0 22.0 37.0 48 29.717097171966937 31.0 27.0 35.0 20.0 37.0 49 29.21562700256976 31.0 26.0 34.0 19.0 36.0 50 32.6432650544699 34.0 31.0 37.0 26.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 6.0 14 8.0 15 23.0 16 56.0 17 119.0 18 228.0 19 351.0 20 583.0 21 970.0 22 1450.0 23 2299.0 24 3373.0 25 5048.0 26 7210.0 27 10255.0 28 14797.0 29 20818.0 30 29727.0 31 41386.0 32 64449.0 33 97971.0 34 136799.0 35 291828.0 36 413905.0 37 90307.0 38 1944.0 39 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.38490766332878 0.4480092433765511 0.08689939089514465 0.08018370239952359 8 99.40618749554984 0.4980937154101587 0.07476260445727527 0.0209561845827211 9 97.24260303322568 1.7277120053854966 0.4167772462764339 0.6129077151124028 10 39.357656532180286 50.23788101418224 3.7416903468855387 6.6627721067519365 11 30.357986652771395 23.407087235984438 31.887221743942934 14.347704367301231 12 31.693033160937023 18.41352782398747 26.615244451061244 23.278194564014264 13 26.680054890639465 20.420628653172717 29.469088414061844 23.43022804212598 14 26.249765355462202 22.25352614101975 29.303380823230135 22.193327680287915 15 25.822469560939616 25.026134546796214 27.912828745088646 21.238567147175527 16 28.91751192641547 27.15646421428063 25.633216604418436 18.29280725488546 17 28.81022273430471 26.661526063344315 24.09936953440051 20.428881667950467 18 25.480535831030043 27.1401200085443 26.600194835878284 20.779149324547376 19 26.64752830298597 27.334794063007724 25.631760190045895 20.38591744396041 20 25.48223498113134 29.50015858734279 24.885186000297757 20.132420431228113 21 24.10584248716737 29.446675815106577 27.54710691376085 18.9003747839652 22 23.533957110214967 27.1583251882011 28.745331382816904 20.562386318767032 23 22.906080691829192 28.691363139123172 29.045595479289787 19.356960689757845 24 24.43709584501162 29.12092446711416 26.24515337661581 20.196826311258405 25 24.714866430619654 29.90730731637851 24.238780754616833 21.139045498385 26 21.67977979014687 31.72426515803714 25.297836739185314 21.298118312630674 27 20.575251312391174 28.260102661030885 27.34830635190855 23.816339674669393 28 21.34342898199872 31.014829534788884 25.040132307154554 22.601609176057842 29 23.65896601052502 30.79604373126889 24.45958935587647 21.085400902329614 30 24.509673827910078 28.017771491821424 26.03284052586268 21.439714154405813 31 23.47060308500929 28.632621092763888 26.667270808924908 21.229505013301917 32 26.04416819320469 28.891862851076777 24.284900543080738 20.779068412637795 33 26.054848565270017 28.60211730285004 25.108664694573722 20.234369437306217 34 22.61010492656435 30.36866702483672 28.026995449514203 18.99423259908472 35 21.16728375483044 33.580060716296956 25.842454802607307 19.410200726265302 36 21.906252225077512 33.54025205678074 24.80912880528711 19.744366912854634 37 23.304248198900893 32.13367942054127 25.365560007508627 19.196512373049213 38 23.472706794658517 32.84796975836468 23.819818886781583 19.859504560195223 39 23.323586145291898 30.625805073500377 24.29558091514606 21.75502786606166 40 23.050913009987767 30.588585595090912 24.005107159733054 22.355394235188268 41 21.218015522140735 31.88705992012376 24.158192492669382 22.73673206506612 42 19.908213529765874 31.823948630646843 24.623355060878122 23.644482778709165 43 20.64151816634194 30.563502903119318 25.23205535669206 23.562923573846682 44 21.96944442646402 30.950261830939418 23.974117898361698 23.106175844234862 45 22.931163383800786 30.86077325893753 23.271074315970715 22.936989041290964 46 20.83166115386856 33.63475716717695 24.335551398481446 21.19803028047304 47 20.780848474648682 31.813106434762346 25.386839839729692 22.019205250859283 48 21.045268595175063 31.542375185288275 25.849170491102925 21.56318572843374 49 22.919997540277947 31.787700095152406 24.244201852559083 21.048100512010564 50 21.54894523234664 31.595615221795725 24.19670656163222 22.658732984225413 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 3.0 6 4.0 7 32.0 8 60.0 9 1677.5 10 3295.0 11 8609.5 12 13924.0 13 16139.0 14 18354.0 15 16388.0 16 14422.0 17 13137.0 18 11852.0 19 11920.5 20 11989.0 21 10887.5 22 9786.0 23 11095.0 24 12404.0 25 15880.5 26 19357.0 27 18954.5 28 18552.0 29 22557.5 30 26563.0 31 28318.5 32 30074.0 33 32712.5 34 35351.0 35 35224.0 36 35097.0 37 42426.0 38 49755.0 39 51580.5 40 53406.0 41 53306.5 42 53207.0 43 57437.0 44 61667.0 45 64123.5 46 66580.0 47 69247.0 48 71914.0 49 69787.5 50 67661.0 51 73352.0 52 79043.0 53 79252.0 54 79461.0 55 80921.5 56 82382.0 57 83237.0 58 84092.0 59 79260.0 60 74428.0 61 71430.0 62 68432.0 63 51780.5 64 35129.0 65 28165.5 66 21202.0 67 16862.5 68 12523.0 69 9426.0 70 6329.0 71 5010.5 72 3692.0 73 3083.0 74 2474.0 75 1603.0 76 732.0 77 599.5 78 467.0 79 309.5 80 152.0 81 123.0 82 94.0 83 48.5 84 3.0 85 1.5 86 0.0 87 0.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1235912.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.52032776866457 #Duplication Level Percentage of deduplicated Percentage of total 1 72.46998087967839 7.624079522430711 2 9.36605049034585 1.9706784211259976 3 3.1330417813393687 0.9888187935783261 4 1.4602677042372199 0.6144997951428356 5 0.7347727139237409 0.386502489297448 6 0.4686558136855033 0.2958247662397014 7 0.3634591815505551 0.26765968043096827 8 0.3132500386337449 0.2636394463979069 9 0.27928823018087773 0.26443833510897635 >10 6.81464646618599 18.958648530662256 >50 2.4834529352246713 18.20357602356705 >100 2.0421559240570692 42.17216023497857 >500 0.057090872074130376 3.91235537144922 >1k 0.011572474069080482 2.2113171814022783 >5k 0.002314494813816096 1.8658014081877616 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 9936 0.8039407336444666 No Hit CATGATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 7346 0.5943788878172556 No Hit CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 5706 0.4616833560965506 No Hit CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 4292 0.3472739159422354 No Hit CATGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 2789 0.22566331583478436 No Hit CATGATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2526 0.20438348361372008 No Hit CATGATGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGA 2241 0.1813235893817683 No Hit CATGATGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 2099 0.1698340982205853 No Hit CATGATGGGCACATTATTGACAGTCTTGCATTTTGTTTTGTCTCGTGATG 1905 0.1541371877609409 No Hit CATGATGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1577 0.1275980814167999 No Hit CATGATGGGCGGGCAACTTGAAGGCATCCTGAGAGAACTCAAAGAAGTGG 1350 0.10923107794082426 No Hit CATGATGGGATTTTACAACTTTTTTCCTGGCTTTATTATATAAATTTTCT 1312 0.10615642537656403 No Hit CATGATGGGGGGGCTGGCGAGATGGCTCAGCGGGTAAGAGCACCCGATTG 1299 0.10510457055194868 No Hit CATGATGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC 1274 0.10308177281230378 No Hit CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCTCTGACTAC 1253 0.10138262271100207 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0014564143725443236 0.0 0.0 0.0 0.0 8 0.0020227977396448937 0.0 0.0 0.0 0.0 9 0.0030746525642602386 0.0 0.0 0.0 0.0 10 0.01771970819928927 0.0 0.0 0.0 0.0 11 0.029451935089229653 0.0 0.0 0.0 0.0 12 0.03916136423952515 0.0 0.0 0.0 0.0 13 0.0457961408255604 0.0 0.0 0.0 0.0 14 0.0553437461566843 0.0 0.0 0.0 0.0 15 0.0648913514878082 0.0 0.0 0.0 0.0 16 0.0759762831010622 0.0 0.0 0.0 0.0 17 0.08269197159668326 0.0 0.0 0.0 0.0 18 0.09086407446484863 0.0 0.0 0.0 0.0 19 0.09992620833845775 0.0 0.0 0.0 0.0 20 0.10939290175999586 0.0 0.0 0.0 0.0 21 0.11853594754319077 0.0 0.0 0.0 0.0 22 0.12654622659218456 0.0 0.0 0.0 0.0 23 0.1352847128274505 0.0 0.0 0.0 0.0 24 0.14572234916401816 0.0 0.0 0.0 0.0 25 0.1541371877609409 0.0 0.0 0.0 0.0 26 0.16554576701253812 0.0 0.0 0.0 0.0 27 0.17768255345040748 0.0 0.0 0.0 0.0 28 0.19791053084685642 0.0 0.0 0.0 0.0 29 0.21037096492306895 0.0 0.0 0.0 0.0 30 0.2248541967389264 0.0 0.0 0.0 0.0 31 0.23877104518768327 0.0 0.0 0.0 0.0 32 0.251959686450168 0.0 0.0 0.0 0.0 33 0.2647437681647237 0.0 0.0 0.0 0.0 34 0.27663781887383565 0.0 0.0 0.0 0.0 35 0.29492391044022553 0.0 0.0 0.0 0.0 36 0.3107017328094557 0.0 0.0 0.0 0.0 37 0.32631773135951425 0.0 0.0 0.0 0.0 38 0.3415291703616439 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCGA 20 7.856711E-4 44.000004 31 CGAACCC 20 7.856711E-4 44.000004 40 CGAACCA 20 7.856711E-4 44.000004 16 ACGCCGT 40 8.312782E-9 44.000004 43 CTCGTAC 20 7.856711E-4 44.000004 40 CGTATAG 20 7.856711E-4 44.000004 19 TCTTCGA 20 7.856711E-4 44.000004 21 CGCGCGA 20 7.856711E-4 44.000004 43 CGCGCAC 20 7.856711E-4 44.000004 17 ATCCGAC 20 7.856711E-4 44.000004 32 TCGTCCG 40 8.312782E-9 44.000004 12 TTTGCGA 20 7.856711E-4 44.000004 38 CGGTATC 20 7.856711E-4 44.000004 11 CGTCCGA 40 8.312782E-9 44.000004 13 TCGACCC 20 7.856711E-4 44.000004 14 TTCGATC 20 7.856711E-4 44.000004 13 TTCGAGT 20 7.856711E-4 44.000004 18 TAAGACG 20 7.856711E-4 44.000004 14 TCGCGCC 20 7.856711E-4 44.000004 42 ACGACGT 20 7.856711E-4 44.000004 24 >>END_MODULE