SRR1527497_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527497_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1012476
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	8338	0.823525693448536	No Hit
CATGATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA	6818	0.6733986780921227	No Hit
CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	4423	0.4368498611325108	No Hit
CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC	3495	0.34519336754649	No Hit
CATGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	2393	0.23635128141309028	No Hit
CATGATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2049	0.20237516741137568	No Hit
CATGATGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGG	1986	0.19615279769594537	No Hit
CATGATGGGCACATTATTGACAGTCTTGCATTTTGTTTTGTCTCGTGATGGT	1587	0.1567444561648869	No Hit
CATGATGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT	1460	0.1442009489607655	No Hit
CATGATGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1298	0.12820056969251617	No Hit
CATGATGGGCGGGCAACTTGAAGGCATCCTGAGAGAACTCAAAGAAGTGGCT	1181	0.11664474022100278	No Hit
CATGATGGGGGGGCTGGCGAGATGGCTCAGCGGGTAAGAGCACCCGATTGCT	1147	0.11328663593013562	No Hit
CATGATGGGATTTTACAACTTTTTTCCTGGCTTTATTATATAAATTTTCTAT	1101	0.10874331836013891	No Hit
CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCTCTGACTACTC	1020	0.10074312872601424	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAATCCG	40	5.6097633E-9	46.000004	34
CGAAACT	20	6.311095E-4	46.000004	37
CGAAAAC	20	6.311095E-4	46.000004	28
GCGCGTT	20	6.311095E-4	46.000004	42
ACGCACC	40	5.6097633E-9	46.000004	39
TCTTCGA	40	5.6097633E-9	46.000004	21
ATTCGCT	20	6.311095E-4	46.000004	12
TAACGTT	20	6.311095E-4	46.000004	14
TAACGGG	20	6.311095E-4	46.000004	40
ACGGGAT	20	6.311095E-4	46.000004	14
AACGGGC	20	6.311095E-4	46.000004	41
CGTAGTA	20	6.311095E-4	46.000004	38
CTACGAG	20	6.311095E-4	46.000004	33
CGCTAGA	20	6.311095E-4	46.000004	31
CGAGCTT	20	6.311095E-4	46.000004	36
TCGTACG	20	6.311095E-4	46.000004	33
TATAGCG	20	6.311095E-4	46.000004	15
TAGGCGA	20	6.311095E-4	46.000004	32
CGCGTTT	20	6.311095E-4	46.000004	43
TAAATCG	20	6.311095E-4	46.000004	22