##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527488_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 595776 Sequences flagged as poor quality 0 Sequence length 52 %GC 59 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.23874744870555 33.0 31.0 34.0 31.0 34.0 2 32.83524009023525 34.0 31.0 34.0 31.0 34.0 3 32.97167391771404 34.0 31.0 34.0 31.0 34.0 4 36.48354582930497 37.0 37.0 37.0 35.0 37.0 5 36.41305792781179 37.0 37.0 37.0 35.0 37.0 6 35.33371938446665 37.0 35.0 37.0 32.0 37.0 7 36.26753343538511 37.0 35.0 37.0 35.0 37.0 8 36.656025083252764 37.0 37.0 37.0 35.0 37.0 9 38.76036463368783 39.0 39.0 39.0 39.0 39.0 10 38.026855731013 39.0 39.0 39.0 35.0 39.0 11 37.80825679449995 39.0 37.0 39.0 35.0 39.0 12 37.18420681598453 39.0 35.0 39.0 35.0 39.0 13 37.0895856832098 39.0 35.0 39.0 35.0 39.0 14 37.636427113546034 40.0 36.0 40.0 33.0 40.0 15 37.74713315071436 40.0 36.0 40.0 34.0 40.0 16 37.925309176603285 40.0 36.0 40.0 35.0 40.0 17 37.78679067300462 40.0 36.0 40.0 34.0 40.0 18 37.71358698571275 40.0 36.0 40.0 34.0 40.0 19 37.58365895907187 40.0 36.0 40.0 33.0 40.0 20 37.48248167096359 40.0 35.0 40.0 33.0 40.0 21 37.457337992802664 40.0 35.0 40.0 33.0 40.0 22 37.49586925287356 40.0 35.0 40.0 33.0 40.0 23 37.44723855945859 40.0 35.0 40.0 34.0 40.0 24 37.42782186593619 39.0 35.0 40.0 34.0 40.0 25 37.511799736813835 39.0 35.0 40.0 34.0 40.0 26 37.46538631969062 39.0 35.0 40.0 34.0 40.0 27 37.44182712965947 39.0 35.0 40.0 34.0 40.0 28 37.27071583951015 39.0 35.0 40.0 33.0 40.0 29 37.19027285422709 39.0 35.0 40.0 33.0 40.0 30 37.007440715973786 39.0 35.0 40.0 33.0 40.0 31 36.92847143893007 39.0 35.0 40.0 32.0 40.0 32 36.89728522129122 39.0 35.0 40.0 33.0 40.0 33 36.829341900311526 39.0 35.0 40.0 33.0 40.0 34 36.18752014179826 38.0 35.0 40.0 30.0 40.0 35 36.036498616929855 38.0 35.0 40.0 30.0 40.0 36 36.075086945429156 38.0 35.0 40.0 31.0 40.0 37 36.05005404715866 38.0 35.0 40.0 31.0 40.0 38 36.122955607476634 38.0 35.0 40.0 31.0 40.0 39 36.119096774626705 38.0 35.0 40.0 31.0 40.0 40 35.908697228488556 38.0 35.0 40.0 30.0 40.0 41 35.74187446288538 38.0 35.0 40.0 30.0 40.0 42 35.664518208185626 37.0 35.0 40.0 30.0 40.0 43 35.67925529057901 37.0 35.0 40.0 30.0 40.0 44 35.58702431786443 37.0 35.0 40.0 30.0 40.0 45 35.418140374906 37.0 34.0 40.0 30.0 40.0 46 35.24468088677624 36.0 34.0 40.0 29.0 40.0 47 35.11460851058116 36.0 34.0 40.0 29.0 40.0 48 34.853144470404985 36.0 34.0 40.0 28.0 40.0 49 34.75968820496294 35.0 34.0 40.0 28.0 40.0 50 35.19224003652379 35.0 34.0 40.0 30.0 40.0 51 35.25633795251907 35.0 35.0 40.0 30.0 40.0 52 34.9439772666237 35.0 34.0 39.0 30.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 3.0 13 5.0 14 7.0 15 14.0 16 45.0 17 82.0 18 126.0 19 222.0 20 362.0 21 515.0 22 786.0 23 1164.0 24 1611.0 25 2193.0 26 2980.0 27 3926.0 28 5131.0 29 6915.0 30 9349.0 31 13054.0 32 18662.0 33 25921.0 34 62845.0 35 48888.0 36 55952.0 37 92254.0 38 187037.0 39 55725.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 0.0 0.0 0.0 100.0 3 100.0 0.0 0.0 0.0 4 0.0 0.0 0.0 100.0 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 99.52213583628746 0.41240331936835317 0.03071624234611666 0.034744601998066386 8 99.73228193146417 0.18379390912020624 0.0735175636480825 0.010406595767536792 9 99.55755183156086 0.19336126329358685 0.09617708669029972 0.15290981845525836 10 69.58739526264905 23.554490278225373 1.7681141905682671 5.09000026855731 11 44.050448490707915 23.192105757868728 15.83632103340853 16.921124718014823 12 38.46798125469975 14.257371898163068 23.494232731764956 23.78041411537222 13 28.34018154474165 14.639226823504137 26.79698410140724 30.223607530346975 14 22.619239445697712 16.834682833816736 33.15440702545923 27.39167069502632 15 27.494226017832208 18.38811902459985 28.715154689010635 25.40250026855731 16 36.461522451391126 19.103320711139755 23.06638736706413 21.368769470404985 17 35.414484638521856 17.862585938339244 23.40762299924804 23.31530642389086 18 32.178704748093246 18.363109625093994 24.34723788806531 25.11094773874745 19 30.670755451713394 23.53770544634225 21.63665538725964 24.154883714684715 20 31.304718551938983 23.969243474057365 21.184975561284777 23.541062412718876 21 31.860296487270386 22.520544634224944 23.02526452895048 22.593894349554194 22 27.955808894618112 19.982510205177782 28.675374637447632 23.386306262756474 23 31.154326458266198 19.785624127188743 26.46346949188957 22.596579922655494 24 33.68178644322698 20.6225158448813 22.88074712643678 22.814950585454934 25 30.019503974648188 21.28283113116339 20.192488452035665 28.50517644215276 26 27.055302664088515 20.587099849607906 24.56510500590826 27.792492480395314 27 24.23142254807176 17.740895907186594 25.174562251584486 32.853119293157164 28 26.263226447523902 23.146618863465463 20.42344773874745 30.166706950263183 29 30.70113599742185 23.49809324309808 20.081708561607048 25.719062197873026 30 30.381888495004834 19.973110699323236 24.956359437103877 24.68864136856805 31 32.54427838650768 20.536913202277365 23.142254807175853 23.7765536040391 32 36.0143745300247 19.485511333118488 21.645047803201205 22.855066333655603 33 36.30525566655925 17.96396632291331 21.749449457514235 23.981328553013213 34 29.34391449135245 20.850789558491783 27.930631646793426 21.874664303362337 35 26.753175690192286 26.932941239660547 26.380888119024597 19.93299495112257 36 28.66849285637555 29.102884305510795 21.112800784187346 21.11582205392631 37 31.59610323343001 27.206366151036633 19.596794768503596 21.600735847029757 38 30.684686862176385 28.089248308088948 19.87357664625631 21.352488183478354 39 33.076189708883874 23.049434686862178 19.072100923837144 24.8022746804168 40 29.56580996884735 22.40607208078204 19.938533945644 28.08958400472661 41 23.999624019765818 25.844109195402297 21.181786443226986 28.974480341604895 42 24.077673488022345 22.71222741433022 21.8884278655065 31.32167123214094 43 23.706728703405304 20.478669835642926 24.610424051992695 31.204177408959072 44 26.399351434096037 19.482490063379526 22.941004672897197 31.17715382962724 45 29.18345149854979 19.919902782253732 22.28723547104952 28.609410248146954 46 27.55280508110431 23.68675475346439 20.555376517348805 28.2050636480825 47 24.64332232248362 22.195254592330002 24.93051079600387 28.230912289182513 48 26.763582285959824 20.759312224728756 26.301160167579763 26.175945321731657 49 30.46144859813084 19.255894832957352 23.703371737028682 26.579284831883125 50 25.84796970673542 19.655877376732196 24.744702707057687 29.7514502094747 51 23.9742789236223 20.89946557095284 26.425535771833708 28.700719733591146 52 23.178677892362227 22.485464335589214 26.12173031474917 28.214127457299387 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 1.0 11 1.0 12 1.0 13 39.5 14 161.0 15 244.0 16 482.0 17 720.0 18 679.0 19 638.0 20 699.5 21 761.0 22 737.5 23 714.0 24 843.5 25 973.0 26 1060.5 27 1148.0 28 1467.5 29 1787.0 30 2007.0 31 2227.0 32 2684.0 33 3141.0 34 3478.5 35 3816.0 36 4783.0 37 5750.0 38 7184.0 39 8481.0 40 8344.0 41 9282.0 42 10220.0 43 11640.0 44 13060.0 45 13225.5 46 13391.0 47 15198.5 48 17006.0 49 18006.5 50 19007.0 51 19865.5 52 20724.0 53 23209.0 54 25694.0 55 27849.0 56 30004.0 57 31923.0 58 33842.0 59 42794.0 60 51746.0 61 53319.5 62 54893.0 63 55365.5 64 63601.0 65 71364.0 66 56919.0 67 42474.0 68 35392.5 69 28311.0 70 24521.0 71 20731.0 72 17392.5 73 14054.0 74 13405.0 75 12756.0 76 11963.0 77 11170.0 78 8556.5 79 5943.0 80 4509.5 81 3076.0 82 1934.5 83 793.0 84 667.5 85 542.0 86 341.0 87 140.0 88 81.5 89 17.0 90 11.0 91 6.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 595776.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.880223439682029 #Duplication Level Percentage of deduplicated Percentage of total 1 67.54552867627072 6.673649156730047 2 9.564419679260668 1.8899720700397464 3 3.2991301984234847 0.9778843055107961 4 1.6444686055993478 0.6499086905145558 5 0.8731992389236205 0.4313701793962832 6 0.7186055993476488 0.42599903319368354 7 0.5521201413427562 0.3818549253410678 8 0.47057624354444144 0.3719518745300247 9 0.4145148138081 0.3685949081533999 >10 10.666961130742049 28.097976420668168 >50 2.675659146507203 17.97068025566656 >100 1.4694889915737972 27.967390428617467 >500 0.08154389779831477 5.507606885809432 >1k 0.01868714324544713 3.5417673756579657 >5k 0.003397662408263115 2.168432430980771 >10k+ 0.0016988312041315574 2.574961059190031 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCGCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 15341 2.574961059190031 No Hit CCGCTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 6884 1.1554678268342464 No Hit CCGCTAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 6035 1.0129646041465248 No Hit CCGCTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 4190 0.7032844559028897 No Hit CCGCTAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 3052 0.5122730690729401 No Hit CCGCTAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 2321 0.3895759480073048 No Hit CCGCTAGGGGCTCTCAGCTCCTGAAGGCAAATCCCAATTCCAGAGCAAGGAA 2013 0.33787866580728326 No Hit CCGCTAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA 1715 0.2878598667955742 No Hit CCGCTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCT 1521 0.2552972929423139 No Hit CCGCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC 1501 0.25194032656568915 No Hit CCGCTAGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACA 1365 0.22911295520464067 No Hit CCGCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTC 1260 0.2114888817273606 No Hit CCGCTAGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCA 1125 0.18882935868514342 No Hit CCGCTAGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCT 1038 0.17422655494682565 No Hit CCGCTAGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCA 989 0.16600198732409496 No Hit CCGCTAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 962 0.1614700827156515 No Hit CCGCTAGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 958 0.16079868944032658 No Hit CCGCTAGGGGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCTCCAACTGCTCT 942 0.15811311633902675 No Hit CCGCTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTT 907 0.15223842517993338 No Hit CCGCTAGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCAT 867 0.14552449242668386 No Hit CCGCTAGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCAT 856 0.14367816091954022 No Hit CCGCTAGGGAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCAGAA 852 0.14300676764421527 No Hit CCGCTAGGGGGGGCTGGAGAGATGGCTCGGCGGTTAAGAGCACTGACTGCTC 850 0.1426710710065528 No Hit CCGCTAGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGGCGTCC 828 0.13897840799226555 No Hit CCGCTAGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTC 817 0.13713207648512193 No Hit CCGCTAGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC 807 0.13545359329680953 No Hit CCGCTAGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAAGA 792 0.13293586851434094 No Hit CCGCTAGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 777 0.13041814373187238 No Hit CCGCTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTC 757 0.1270611773552476 No Hit CCGCTAGGGGCTCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACA 728 0.12219357610914168 No Hit CCGCTAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTTCAACA 704 0.11816521645719197 No Hit CCGCTAGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 702 0.11782951981952948 No Hit CCGCTAGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 690 0.11581533999355462 No Hit CCGCTAGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCT 681 0.11430470512407348 No Hit CCGCTAGGGAGTCTAATTCTACTAAAGGCTTAACCATTCTTCTCTTCACTTT 678 0.11380116016757977 No Hit CCGCTAGGGGCTCTTTCTAAGCCGGCGATCCGTCAGGGTGAAGCCATGTTCA 675 0.11329761521108606 No Hit CCGCTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT 659 0.11061204210978623 No Hit CCGCTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGTACCCGACTGCT 650 0.10910140724030508 No Hit CCGCTAGGGGAGTTCCTGGGTCCTGTCCGAAGGCACGCTCAGGAGCAGCCAA 646 0.10843001396498013 No Hit CCGCTAGGGGGGGCTGGCGAGATAGCTCAGTGGTTAAGAGCACCGACTGCTC 639 0.10725507573316145 No Hit CCGCTAGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTC 634 0.10641583413900527 No Hit CCGCTAGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC 622 0.1044016543130304 No Hit CCGCTAGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAAC 603 0.10121253625523688 No Hit CCGCTAGGGGGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 598 0.10037329466108066 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.02484155118702331 0.0 0.0 0.0 0.0 7 0.025177247824685788 0.0 0.0 0.0 0.0 8 0.025345096143517026 0.0 0.0 0.0 0.0 9 0.025512944462348267 0.0 0.0 0.0 0.0 10 0.032730422172091524 0.0 0.0 0.0 0.0 11 0.060089698141583416 0.0 0.0 0.0 0.0 12 0.06898565903963906 0.0 0.0 0.0 0.0 13 0.07586744011171984 0.0 0.0 0.0 0.0 14 0.08425985605328178 0.0 0.0 0.0 0.0 15 0.10960495219679879 0.0 0.0 0.0 0.0 16 0.1226971210656354 0.0 0.0 0.0 0.0 17 0.12823611558706627 0.0 0.0 0.0 0.0 18 0.13629283489096572 0.0 0.0 0.0 0.0 19 0.15290981845525836 0.0 0.0 0.0 0.0 20 0.16348426254162637 0.0 0.0 0.0 0.0 21 0.1696946503383822 0.0 0.0 0.0 0.0 22 0.1757371898163068 0.0 0.0 0.0 0.0 23 0.18110833601890644 0.0 0.0 0.0 0.0 24 0.19000429691696208 0.0 0.0 0.0 0.0 25 0.19671822967021163 0.0 0.0 0.0 0.0 26 0.20494279729294232 0.0 0.0 0.0 0.0 27 0.21383875819099796 0.0 0.0 0.0 0.0 28 0.22458105059619723 0.0 0.0 0.0 0.0 29 0.23398055645074659 0.0 0.0 0.0 0.0 30 0.24338006230529596 0.0 0.0 0.0 0.0 31 0.2541223547104952 0.0 0.0 0.0 0.0 32 0.26503249543452573 0.0 0.0 0.0 0.0 33 0.2729213664195939 0.0 0.0 0.0 0.0 34 0.28299226554946827 0.0 0.0 0.0 0.0 35 0.2974272209689548 0.0 0.0 0.0 0.0 36 0.3145477494897411 0.0 0.0 0.0 0.0 37 0.3293184015468901 0.0 0.0 0.0 0.0 38 0.34123563218390807 0.0 0.0 0.0 0.0 39 0.35046728971962615 0.0 0.0 0.0 0.0 40 0.35567058760339454 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGGTA 55 1.8189894E-12 46.000004 42 AGGCCGT 35 1.0184522E-7 46.000004 30 AATTCCG 35 1.0184522E-7 46.000004 29 CGCCAGT 35 1.0184522E-7 46.000004 16 ACGCGAT 30 1.8598839E-6 46.0 27 AACGTAC 40 5.6043064E-9 46.0 27 TAATAGC 40 5.6043064E-9 46.0 35 AACAACG 30 1.8598839E-6 46.0 22 AGGTACG 25 3.4151602E-5 46.0 26 ACACGGG 25 3.4151602E-5 46.0 30 CGAACCT 40 5.6043064E-9 46.0 29 CTACTAG 20 6.3089945E-4 46.0 22 CGAAACA 20 6.3089945E-4 46.0 15 TCCGATT 20 6.3089945E-4 46.0 19 ACCGCGA 30 1.8598839E-6 46.0 33 CTATACG 20 6.3089945E-4 46.0 41 CGTTGAC 30 1.8598839E-6 46.0 29 GGGTAAT 20 6.3089945E-4 46.0 7 TATATTC 25 3.4151602E-5 46.0 19 CGATTTG 20 6.3089945E-4 46.0 39 >>END_MODULE