##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527486_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1035450 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.43849437442658 31.0 31.0 33.0 30.0 34.0 2 30.659936259597277 31.0 30.0 33.0 27.0 34.0 3 31.950592496016224 33.0 31.0 34.0 30.0 34.0 4 35.971805495195326 37.0 35.0 37.0 35.0 37.0 5 36.2311980298421 37.0 35.0 37.0 35.0 37.0 6 36.22625718286735 37.0 37.0 37.0 35.0 37.0 7 36.40007050074847 37.0 37.0 37.0 35.0 37.0 8 36.54352407165967 37.0 37.0 37.0 35.0 37.0 9 38.26992322178763 39.0 39.0 39.0 37.0 39.0 10 36.336922111159396 39.0 35.0 39.0 31.0 39.0 11 36.73085421797286 38.0 37.0 39.0 32.0 39.0 12 36.90054951953257 39.0 37.0 39.0 34.0 39.0 13 36.92178569703994 39.0 37.0 39.0 33.0 39.0 14 37.80079192621565 40.0 38.0 40.0 33.0 40.0 15 37.84972717176107 40.0 38.0 40.0 33.0 40.0 16 37.948300738809216 40.0 38.0 40.0 34.0 40.0 17 37.910853252209186 40.0 38.0 40.0 34.0 40.0 18 37.7242995798928 40.0 37.0 40.0 33.0 40.0 19 37.64065961659182 39.0 37.0 40.0 33.0 40.0 20 37.49984934086629 39.0 37.0 40.0 33.0 40.0 21 37.39397942923367 39.0 37.0 40.0 33.0 40.0 22 37.238948283355064 39.0 36.0 40.0 33.0 40.0 23 36.97744072625429 38.0 36.0 40.0 32.0 40.0 24 36.646805736636246 38.0 35.0 40.0 32.0 40.0 25 36.28627263508619 38.0 35.0 40.0 31.0 40.0 26 35.603259452412 38.0 35.0 39.0 30.0 40.0 27 35.50154715341156 37.0 34.0 39.0 30.0 40.0 28 35.27228934279782 37.0 34.0 39.0 30.0 40.0 29 34.87040030904438 36.0 34.0 38.0 29.0 40.0 30 34.510895745811 36.0 33.0 38.0 28.0 40.0 31 34.379266019605005 36.0 33.0 38.0 27.0 40.0 32 34.07865275966971 36.0 33.0 38.0 26.0 40.0 33 33.66375488917862 35.0 33.0 38.0 25.0 39.0 34 33.210261239074796 35.0 32.0 38.0 24.0 39.0 35 32.95569462552513 35.0 31.0 38.0 23.0 39.0 36 32.38569124535226 35.0 31.0 38.0 21.0 39.0 37 31.828345163938383 34.0 30.0 38.0 19.0 39.0 38 31.27723598435463 34.0 29.0 37.0 17.0 39.0 39 30.3493070645613 33.0 28.0 37.0 14.0 38.0 40 29.87298758993674 33.0 27.0 36.0 12.0 38.0 41 29.473779516152398 33.0 27.0 36.0 12.0 38.0 42 29.148210922787193 32.0 26.0 35.0 10.0 38.0 43 28.704982374812882 32.0 26.0 35.0 10.0 38.0 44 28.28637983485441 31.0 24.0 35.0 10.0 37.0 45 27.91607127335941 31.0 24.0 34.0 10.0 37.0 46 27.739424404848133 31.0 24.0 34.0 10.0 37.0 47 27.312818581293158 30.0 23.0 34.0 10.0 36.0 48 26.694422714761696 30.0 23.0 33.0 9.0 35.0 49 25.99730165628471 29.0 21.0 33.0 9.0 35.0 50 28.197017721763483 32.0 25.0 34.0 9.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 8.0 12 8.0 13 11.0 14 27.0 15 59.0 16 148.0 17 346.0 18 629.0 19 1235.0 20 2216.0 21 3405.0 22 5076.0 23 7358.0 24 10444.0 25 14504.0 26 19602.0 27 26529.0 28 33372.0 29 38334.0 30 39424.0 31 41881.0 32 53205.0 33 76816.0 34 117488.0 35 216988.0 36 246065.0 37 78597.0 38 1670.0 39 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 100.0 0.0 6 0.0 0.0 0.0 100.0 7 98.9436476894104 0.7588005215123859 0.15635713940798687 0.14119464966922596 8 98.18996571538945 1.3633685837075666 0.23062436621758658 0.21604133468540251 9 92.22009754213144 4.656236418948283 1.4146506349896182 1.7090154039306582 10 41.67328214785842 39.89927084842339 7.198802453039741 11.22864455067845 11 27.754406296779177 33.65889226906177 22.276787870008206 16.30991356415085 12 31.10039113428944 27.215027282823893 24.093389347626637 17.59119223526003 13 23.36829397846347 27.93703220821865 26.4196243179294 22.27504949538848 14 23.98551354483558 31.501376213240622 23.224105461393595 21.289004780530206 15 24.211405669032786 30.284900284900285 23.706600994736586 21.79709305133034 16 26.15481191752378 30.762470423487372 25.031145878603507 18.051571780385338 17 28.96083828287218 29.45019073832633 21.074798396832296 20.51417258196919 18 26.80061808875368 30.797237915881986 21.858129315756432 20.5440146796079 19 26.28345163938384 30.549422956202616 22.17663817663818 20.990487227775365 20 23.599884108358683 31.436959775942825 24.18745472982761 20.775701385870875 21 24.531459751798735 29.019460138104208 26.849582307209424 19.599497802887633 22 22.79067072287411 31.710270896711574 22.261528803901683 23.237529576512628 23 23.521464097735283 32.84871311989956 22.805253754406294 20.82456902795886 24 23.021488241827225 30.578878748370276 24.65642957168381 21.74320343811869 25 23.71761070066155 29.004104495629917 24.03747163069197 23.240813173016566 26 24.097831860543725 29.104350765367716 22.3404316963639 24.45738567772466 27 24.379834854411126 28.957458110000484 22.540827659471727 24.121879376116663 28 26.28779757593317 30.57771983195712 21.767637259162683 21.366845332947026 29 26.86136462407649 31.647109952194697 20.790091264667534 20.70143415906128 30 26.00849872036313 32.84272538509826 20.547588005215122 20.601187889323484 31 26.529335071707955 32.845236370660096 21.180646095900332 19.444782461731613 32 25.631078275146074 31.97498672074943 22.851224105461394 19.5427108986431 33 26.981602201941186 32.449273262832584 21.321357863730743 19.247766671495484 34 24.648413733159497 34.76836158192091 21.157757496740548 19.425467188179052 35 24.711091795837557 36.635762228982564 20.03476749239461 18.61837848278526 36 27.13718673040707 35.40199913081269 19.480129412332804 17.98068472644744 37 25.5260997633879 36.4565164904148 20.14882418272249 17.868559563474818 38 27.41223622579555 34.40050219711237 18.569027958858467 19.618233618233617 39 26.742479115360474 33.19638804384567 18.68462987107055 21.37650296972331 40 25.835144140228888 35.05046115215607 20.602250229368874 18.512144478246174 41 23.662948476507797 35.33825872808924 20.750784682988073 20.24800811241489 42 23.681780868221548 35.754889178617994 20.382538992708486 20.18079096045198 43 22.760152590661065 35.3492684340142 20.0625814863103 21.82799748901444 44 23.732869766768072 34.635569076247045 20.453426046646385 21.1781351103385 45 24.110000482881837 35.11825776232556 21.447679752764497 19.324062002028104 46 23.606258148631028 35.364913805591776 19.41609928050606 21.61272876527114 47 23.94427543580086 36.01052682408615 19.99826162538027 20.046936114732723 48 23.892607079047757 36.45777198319571 19.606451301366555 20.043169636389976 49 23.015403930658167 35.96204548746922 20.481529769665364 20.541020812207254 50 20.94557921676566 36.17016755999807 21.632913226133567 21.251339997102708 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 23.5 4 47.0 5 97.5 6 148.0 7 240.5 8 333.0 9 1625.0 10 2917.0 11 2758.5 12 2600.0 13 2398.5 14 2197.0 15 2509.0 16 2821.0 17 3463.5 18 4106.0 19 5171.5 20 6237.0 21 7750.5 22 9264.0 23 11904.5 24 14545.0 25 17589.5 26 20634.0 27 23990.5 28 27347.0 29 30185.0 30 33023.0 31 36717.0 32 40411.0 33 40637.5 34 40864.0 35 40259.0 36 39654.0 37 41294.5 38 42935.0 39 43839.0 40 44743.0 41 44391.0 42 44039.0 43 44743.5 44 45448.0 45 48198.0 46 50948.0 47 50489.0 48 50030.0 49 52020.0 50 54010.0 51 57167.5 52 60325.0 53 62567.5 54 64810.0 55 66560.5 56 68311.0 57 64488.5 58 60666.0 59 57014.0 60 53362.0 61 50155.5 62 46949.0 63 41697.0 64 36445.0 65 29017.0 66 21589.0 67 18436.0 68 15283.0 69 13226.0 70 11169.0 71 9037.5 72 6906.0 73 6410.5 74 5915.0 75 4177.5 76 2440.0 77 1650.0 78 860.0 79 826.0 80 792.0 81 556.0 82 320.0 83 163.5 84 7.0 85 3.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1035450.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.601424287024784 #Duplication Level Percentage of deduplicated Percentage of total 1 79.94592793583922 18.86837765233649 2 7.6463775581408715 3.609308020169345 3 2.6820801095225435 1.8990273190989437 4 1.400103573455742 1.3217775393163418 5 0.8956622800948629 1.0569452745201446 6 0.6476783908428492 0.9171679502291731 7 0.5141576279623149 0.8494396629564184 8 0.45610993150294565 0.8611875211941465 9 0.3661964797470858 0.7778482641833265 >10 3.9731219089776193 21.836475272497637 >50 0.9226925470570909 14.99956796529847 >100 0.5163768154682357 24.42552970789052 >500 0.021101937170576936 3.3608625773189993 >1k 0.011999140744053552 4.699016340016647 >5k 4.1376347393288116E-4 0.5174689329734244 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TACTTCGGGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAA 5299 0.5117581727751219 No Hit TACTTCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 4509 0.43546284224250326 No Hit TACTTCGGGGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAA 4056 0.391713747645951 No Hit TACTTCGGGGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAA 3107 0.3000627746390458 No Hit TACTTCGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTACTTCGGGA 2894 0.27949200830556764 No Hit TACTTCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2003 0.1934424646289053 No Hit TACTTCGGGCAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAA 1743 0.16833260901057512 No Hit TACTTCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 1686 0.16282775604809502 No Hit TACTTCGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCAC 1644 0.15877154860205708 No Hit TACTTCGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 1553 0.1499830991356415 No Hit TACTTCGGGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAAAAA 1526 0.14737553720604568 No Hit TACTTCGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA 1496 0.14447824617316143 No Hit TACTTCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 1440 0.13906996957844417 No Hit TACTTCGGGAGGAGGCTTAAGTACTTTTACATACAAATTTACCCTAGCCA 1440 0.13906996957844417 No Hit TACTTCGGGAAGACGCAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAA 1434 0.1384905113718673 No Hit TACTTCGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGC 1393 0.13453088029359217 No Hit TACTTCGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA 1380 0.13327538751267565 No Hit TACTTCGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 1322 0.12767395818243277 Illumina Single End Adapter 2 (97% over 34bp) TACTTCGGGATTCATGAATTTTGTTTTAATTGTGAGCAAATCTGTTGATT 1315 0.1269979236080931 No Hit TACTTCGGGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAAA 1279 0.123521174368632 No Hit TACTTCGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCG 1230 0.11878893234825438 No Hit TACTTCGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 1214 0.11724371046404945 No Hit TACTTCGGGGCAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAA 1173 0.1132840793857743 No Hit TACTTCGGGGCAGAGTGCAGTGCTTACTTCGGGAAGAAGGAGAAGAAGAA 1126 0.10874499010092231 No Hit TACTTCGGGAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAA 1040 0.10043942247332077 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 7.726109421024675E-4 0.0 0.0 0.0 0.0 8 0.006663769375633783 0.0 0.0 0.0 0.0 9 0.016611135255203052 0.0 0.0 0.0 0.0 10 0.12603215993046502 0.0 0.0 0.0 0.0 11 0.25602395093920516 0.0 0.0 0.0 0.0 12 0.3531797769085905 0.0 0.0 0.0 0.0 13 0.42532232362740835 0.0 0.0 0.0 0.0 14 0.5069293543869815 0.0 0.0 0.0 0.0 15 0.6038920276208412 0.0 0.0 0.0 0.0 16 0.6915833695494712 0.0 0.0 0.0 0.0 17 0.7575450287314694 0.0 0.0 0.0 0.0 18 0.8239895697522817 0.0 0.0 0.0 0.0 19 0.896421845574388 0.0 0.0 0.0 0.0 20 0.9771596890240958 0.0 0.0 0.0 0.0 21 1.057221497899464 0.0 0.0 0.0 0.0 22 1.148969047274132 0.0 0.0 0.0 0.0 23 1.2490221642764017 0.0 0.0 0.0 0.0 24 1.3583466125839008 0.0 0.0 0.0 0.0 25 1.4684436718335023 0.0 0.0 0.0 0.0 26 1.5834661258390073 0.0 0.0 0.0 0.0 27 1.7171278188227341 0.0 0.0 0.0 0.0 28 1.863441015983389 0.0 0.0 0.0 0.0 29 1.9567337872422619 0.0 0.0 0.0 0.0 30 2.052827273166256 0.0 0.0 0.0 0.0 31 2.129605485537689 0.0 0.0 0.0 0.0 32 2.201554879520981 0.0 0.0 0.0 0.0 33 2.268675455116133 0.0 0.0 0.0 0.0 34 2.350379062243469 0.0 0.0 0.0 0.0 35 2.458448017770052 0.0 0.0 0.0 0.0 36 2.5380269448066057 0.0 0.0 0.0 0.0 37 2.608527693273456 0.0 0.0 0.0 0.0 38 2.6831812255541068 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTC 20 7.85612E-4 44.0 40 AACGTCG 40 8.310963E-9 44.0 27 ATAGGCG 25 4.442533E-5 44.0 13 CGACGTT 25 4.442533E-5 44.0 44 CGACGTA 35 1.4458965E-7 44.0 37 CGACGAA 20 7.85612E-4 44.0 43 TAGACGT 35 1.4458965E-7 44.0 11 ACGCACT 35 1.4458965E-7 44.0 19 ATGGATA 20 7.85612E-4 44.0 24 GACGTTA 25 4.442533E-5 44.0 9 TTAGACG 35 1.4458965E-7 44.0 37 TATGGAC 50 2.7284841E-11 44.0 44 ACCGAAT 25 4.442533E-5 44.0 35 GTTAGCG 30 2.527473E-6 44.0 40 CGCGATA 30 2.527473E-6 44.0 15 CACGACC 20 7.85612E-4 44.0 12 TACGGGT 75 0.0 44.0 28 CGTTCAC 30 2.527473E-6 44.0 42 CTTGGTA 25 4.442533E-5 44.0 24 ATACTAC 20 7.85612E-4 44.0 14 >>END_MODULE