##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527485_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 816750 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.969487603305787 33.0 31.0 34.0 30.0 34.0 2 31.641541475359656 33.0 31.0 34.0 30.0 34.0 3 32.516683195592286 34.0 31.0 34.0 31.0 34.0 4 36.237103152739515 37.0 37.0 37.0 35.0 37.0 5 36.44615243342516 37.0 37.0 37.0 35.0 37.0 6 36.37692561983471 37.0 37.0 37.0 35.0 37.0 7 36.50462932353842 37.0 37.0 37.0 35.0 37.0 8 36.620210590756045 37.0 37.0 37.0 35.0 37.0 9 38.42014937251301 39.0 39.0 39.0 37.0 39.0 10 36.88892072237527 39.0 37.0 39.0 32.0 39.0 11 37.25785736149373 39.0 37.0 39.0 34.0 39.0 12 37.46219651056015 39.0 37.0 39.0 35.0 39.0 13 37.44314661769207 39.0 37.0 39.0 35.0 39.0 14 38.26273890419345 40.0 38.0 40.0 35.0 40.0 15 38.39289868380777 40.0 38.0 40.0 35.0 40.0 16 38.48824242424242 40.0 38.0 40.0 35.0 40.0 17 38.50866850321396 40.0 38.0 40.0 35.0 40.0 18 38.3750866238139 40.0 38.0 40.0 35.0 40.0 19 38.30063666972758 40.0 38.0 40.0 35.0 40.0 20 38.294734006734004 40.0 38.0 40.0 35.0 40.0 21 38.248037955310686 40.0 38.0 40.0 34.0 40.0 22 38.215029078665445 40.0 38.0 40.0 35.0 40.0 23 37.99055157636976 40.0 38.0 40.0 34.0 40.0 24 37.789635751453936 40.0 37.0 40.0 34.0 40.0 25 37.591367003367004 40.0 36.0 40.0 34.0 40.0 26 37.44607897153352 40.0 35.0 40.0 34.0 40.0 27 37.408461585552494 40.0 35.0 40.0 33.0 40.0 28 37.29598041016223 40.0 35.0 40.0 33.0 40.0 29 37.181519436792165 40.0 35.0 40.0 33.0 40.0 30 36.96783593510866 39.0 35.0 40.0 33.0 40.0 31 36.817973676155496 39.0 35.0 40.0 33.0 40.0 32 36.57183348637894 39.0 35.0 40.0 32.0 40.0 33 36.272999081726354 39.0 35.0 40.0 31.0 40.0 34 35.87205632078359 39.0 35.0 40.0 29.0 40.0 35 35.62529415365779 39.0 35.0 40.0 27.0 40.0 36 35.29306029996939 39.0 35.0 40.0 25.0 40.0 37 34.833987144168965 38.0 35.0 40.0 22.0 40.0 38 34.66588429752066 39.0 35.0 40.0 21.0 40.0 39 34.32906519742883 38.0 35.0 40.0 18.0 40.0 40 33.94887786960514 38.0 34.0 40.0 15.0 40.0 41 33.67904499540863 38.0 34.0 40.0 15.0 40.0 42 33.43584695439241 37.0 34.0 40.0 10.0 40.0 43 33.294227119681665 37.0 33.0 40.0 10.0 40.0 44 33.16282705846342 37.0 33.0 40.0 10.0 40.0 45 32.98538353229262 36.0 33.0 40.0 10.0 40.0 46 32.7696149372513 36.0 33.0 40.0 10.0 40.0 47 32.563182124273034 35.0 33.0 40.0 10.0 40.0 48 32.33906825834099 35.0 33.0 40.0 10.0 40.0 49 32.11526538108356 35.0 32.0 39.0 9.0 40.0 50 32.11841444750536 35.0 33.0 39.0 9.0 40.0 51 32.04869666360575 35.0 33.0 39.0 9.0 40.0 52 31.679822467095196 35.0 32.0 39.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 12.0 13 10.0 14 18.0 15 26.0 16 62.0 17 190.0 18 362.0 19 770.0 20 1381.0 21 2075.0 22 3372.0 23 5281.0 24 7785.0 25 10920.0 26 15730.0 27 20284.0 28 21769.0 29 18249.0 30 14393.0 31 14221.0 32 18688.0 33 23221.0 34 37968.0 35 48532.0 36 80133.0 37 165795.0 38 250612.0 39 54890.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 100.0 0.0 6 0.0 0.0 0.0 100.0 7 98.9610039791858 0.7533516988062442 0.1494949494949495 0.13614937251300888 8 98.21707988980715 1.3519436792164063 0.21377410468319558 0.21720232629323538 9 92.20079583715948 4.683318028772574 1.3841444750535659 1.7317416590143864 10 41.874502601775326 39.591796755433116 7.194367921640649 11.339332721150903 11 27.723293541475357 33.47070707070707 22.30719314355678 16.498806244260788 12 30.566146311600857 27.60281603917967 24.169329660238752 17.661707988980716 13 23.332598714416896 28.22332415059688 26.480685644322012 21.96339149066422 14 23.86176920722375 31.559351086623817 23.31202938475666 21.266850321395776 15 23.780593816957456 30.53884297520661 23.71460055096419 21.96596265687175 16 26.097337006427917 31.048056320783594 24.66727884909703 18.18732782369146 17 28.565289256198344 29.843281297826753 21.1089072543618 20.4825221916131 18 26.485705540250994 31.088093051729416 21.774839302112028 20.651362105907562 19 26.32029384756657 30.911906948270584 21.74214876033058 21.025650443832262 20 23.608325681052953 31.34104683195592 24.301805938169572 20.74882154882155 21 24.62136516681971 29.455524946434036 26.350290786654423 19.572819100091827 22 22.894643403734314 31.877441077441077 22.214631160085705 23.013284358738904 23 23.58800122436486 32.744046525864704 22.835016835016837 20.8329354147536 24 23.164493419038873 30.519498010407105 24.610958065503517 21.705050505050504 25 23.678849097030916 29.3425160697888 24.08337924701561 22.89525558616468 26 23.74900520355066 29.50462197734925 22.451790633608816 24.294582185491276 27 24.339761248852156 29.262320171411083 22.560759106213652 23.83715947352311 28 26.25785123966942 30.693602693602696 21.70811141720233 21.34043464952556 29 26.58732782369146 31.992898683807773 20.743434343434345 20.676339149066422 30 26.088399142944596 32.830241812059995 20.422161003979188 20.65919804101622 31 26.41554943373125 33.07891031527395 21.15139271502908 19.35414753596572 32 25.896296296296295 32.32053872053872 22.40391796755433 19.37924701561065 33 26.771717171717174 32.79559228650138 21.24775022956841 19.18494031221304 34 25.005448423630245 34.95549433731252 21.023691460055097 19.015365779002142 35 25.121028466483015 36.430609121518216 19.918457300275485 18.529905111723295 36 27.37875726966636 35.495684113865934 19.262565044383226 17.86299357208448 37 26.231404958677686 36.3504132231405 19.649954086317724 17.768227731864094 38 27.84695439240894 34.495990205081114 18.278787878787877 19.37826752372207 39 27.295745332108968 33.186042240587696 18.542883379247016 20.97532904805632 40 26.61524334251607 34.71111111111111 20.352494643403734 18.321150902969087 41 24.563942454851546 35.15053565962657 20.341720232629324 19.943801652892564 42 24.701316192225285 34.77171717171717 20.535782063054793 19.991184573002755 43 23.755249464340373 34.81787572696663 20.123048668503213 21.303826140189777 44 24.561248852157945 33.990572390572396 20.389715335169882 21.058463422099784 45 25.048546066727884 34.29923477196205 21.311906948270583 19.340312213039486 46 24.230180593816957 34.77918579736762 19.48992959902051 21.50070400979492 47 24.352249770431587 35.20636669727579 20.018120599938783 20.423262932353843 48 24.480440771349862 35.529599020508115 19.760514233241505 20.22944597490052 49 23.71043771043771 34.829139883685336 20.825589225589226 20.634833180287725 50 21.000795837159473 35.83985307621671 21.574043464952556 21.585307621671255 51 21.989960208142026 36.403183348637896 21.15408631772268 20.4527701254974 52 22.87505356596266 34.25858585858586 21.76039179675543 21.105968778696052 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 15.0 4 30.0 5 77.0 6 124.0 7 221.5 8 319.0 9 1342.0 10 2365.0 11 2147.0 12 1929.0 13 1739.0 14 1652.0 15 1755.0 16 2090.5 17 2426.0 18 2795.0 19 3164.0 20 3641.5 21 4119.0 22 5092.0 23 6065.0 24 7726.5 25 9388.0 26 12429.0 27 15470.0 28 19659.5 29 23849.0 30 28749.0 31 33649.0 32 33247.0 33 32845.0 34 34264.0 35 35683.0 36 35351.0 37 35019.0 38 35424.5 39 35715.0 40 35600.0 41 35775.0 42 35950.0 43 35299.5 44 34649.0 45 35207.0 46 35765.0 47 35531.0 48 35297.0 49 36256.0 50 37215.0 51 39865.0 52 42515.0 53 44575.0 54 46635.0 55 50444.5 56 54254.0 57 49538.0 58 44822.0 59 42555.5 60 40289.0 61 38681.0 62 37073.0 63 33574.0 64 25403.5 65 20732.0 66 16575.5 67 12419.0 68 10989.0 69 9559.0 70 8666.0 71 7773.0 72 6574.5 73 5376.0 74 4305.0 75 3234.0 76 2198.5 77 1163.0 78 713.0 79 263.0 80 237.5 81 212.0 82 250.0 83 288.0 84 150.5 85 13.0 86 7.0 87 1.0 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 816750.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.910746679463223 #Duplication Level Percentage of deduplicated Percentage of total 1 77.69086375399704 17.799556987765172 2 8.051225161378172 3.6891916026331137 3 2.9221483857749915 2.0084580427887957 4 1.6308891991844876 1.4945955721915374 5 1.0519556009969786 1.2050544146242133 6 0.8079656835542076 1.1106658260965874 7 0.6584847119284315 1.0560463499104127 8 0.5277243073341774 0.9672446337542826 9 0.4244288246551073 0.8751583156621932 >10 4.805506933742943 25.506548535676576 >50 0.8754947533415967 13.708849399958334 >100 0.5226030219946726 23.26064429750979 >500 0.021011874080198178 3.3832385194033545 >1k 0.009697788037014545 3.9347475020256395 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TACTTCGGGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAAA 4004 0.4902356902356902 No Hit TACTTCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 3964 0.4853382307927762 No Hit TACTTCGGGGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAA 3237 0.39632690541781446 No Hit TACTTCGGGGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAAAA 2394 0.2931129476584022 No Hit TACTTCGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTACTTCGGGAAG 2136 0.261524334251607 No Hit TACTTCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1637 0.20042852770125497 No Hit TACTTCGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 1484 0.18169574533210897 Illumina Single End Adapter 2 (97% over 34bp) TACTTCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 1413 0.17300275482093663 No Hit TACTTCGGGCAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAA 1384 0.169452096724824 No Hit TACTTCGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 1275 0.1561065197428834 No Hit TACTTCGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAG 1269 0.15537190082644628 No Hit TACTTCGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACAG 1186 0.14520967248239977 No Hit TACTTCGGGAAGACGCAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAA 1132 0.1385981022344659 No Hit TACTTCGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGA 1131 0.138475665748393 No Hit TACTTCGGGAGGAGGCTTAAGTACTTTTACATACAAATTTACCCTAGCCAGC 1126 0.13786348331802878 No Hit TACTTCGGGATTCATGAATTTTGTTTTAATTGTGAGCAAATCTGTTGATTTC 1072 0.13125191307009487 No Hit TACTTCGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACA 1023 0.12525252525252525 No Hit TACTTCGGGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 1010 0.1236608509335782 No Hit TACTTCGGGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAAAAAA 998 0.122191613100704 No Hit TACTTCGGGGCAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAA 962 0.11778389960208142 No Hit TACTTCGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 930 0.11386593204775024 Illumina Single End Adapter 2 (97% over 34bp) TACTTCGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGCG 927 0.11349862258953167 No Hit TACTTCGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCAT 901 0.1103152739516376 No Hit TACTTCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 894 0.10945821854912764 No Hit TACTTCGGGAGTGCAGTGCTTACTTCGGGGAAAAAAAAAAAAAAAAAAAAAA 880 0.10774410774410774 No Hit TACTTCGGGAGAGTGCAGTGCTTACTTCGGGAAAAAAAAAAAAAAAAAAAAA 872 0.10676461585552495 No Hit TACTTCGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 869 0.10639730639730641 No Hit TACTTCGGGGCAGAGTGCAGTGCTTACTTCGGGAAGAAGGAGAAGAAGAAGC 833 0.1019895928986838 No Hit TACTTCGGTATTTGACTCTATTTGTATCCTAGCAGCATGTTTCCTGTTTCGT 817 0.10003060912151822 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0011019283746556473 0.0 0.0 0.0 0.0 8 0.00869299051117233 0.0 0.0 0.0 0.0 9 0.018487909397000304 0.0 0.0 0.0 0.0 10 0.14153657790021426 0.0 0.0 0.0 0.0 11 0.2782981328435874 0.0 0.0 0.0 0.0 12 0.38689929599020506 0.0 0.0 0.0 0.0 13 0.46538108356290175 0.0 0.0 0.0 0.0 14 0.5528007346189164 0.0 0.0 0.0 0.0 15 0.6583409856137129 0.0 0.0 0.0 0.0 16 0.7631466176920723 0.0 0.0 0.0 0.0 17 0.842363024181206 0.0 0.0 0.0 0.0 18 0.9078665442301805 0.0 0.0 0.0 0.0 19 0.9842669115396389 0.0 0.0 0.0 0.0 20 1.0734006734006734 0.0 0.0 0.0 0.0 21 1.149556167737986 0.0 0.0 0.0 0.0 22 1.2417508417508418 0.0 0.0 0.0 0.0 23 1.3275788184879094 0.0 0.0 0.0 0.0 24 1.4148760330578511 0.0 0.0 0.0 0.0 25 1.487603305785124 0.0 0.0 0.0 0.0 26 1.5696357514539332 0.0 0.0 0.0 0.0 27 1.6598714416896234 0.0 0.0 0.0 0.0 28 1.7779002142638507 0.0 0.0 0.0 0.0 29 1.8385062748699113 0.0 0.0 0.0 0.0 30 1.898989898989899 0.0 0.0 0.0 0.0 31 1.9417202326293235 0.0 0.0 0.0 0.0 32 1.9859198041016224 0.0 0.0 0.0 0.0 33 2.031711049892868 0.0 0.0 0.0 0.0 34 2.090480563207836 0.0 0.0 0.0 0.0 35 2.1780226507499236 0.0 0.0 0.0 0.0 36 2.2376492194674014 0.0 0.0 0.0 0.0 37 2.288215488215488 0.0 0.0 0.0 0.0 38 2.3473523109886747 0.0 0.0 0.0 0.0 39 2.4155494337312517 0.0 0.0 0.0 0.0 40 2.4881542699724517 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGTA 70 0.0 46.000004 29 TCGATTG 35 1.0190888E-7 46.000004 18 TCGATAG 35 1.0190888E-7 46.000004 27 CACTCGA 35 1.0190888E-7 46.000004 24 ACTCGAT 35 1.0190888E-7 46.000004 25 CGGTACC 35 1.0190888E-7 46.000004 6 CGTCATT 35 1.0190888E-7 46.000004 13 CGATAGC 35 1.0190888E-7 46.000004 28 GCATAAC 25 3.416282E-5 46.0 36 AACGTTG 25 3.416282E-5 46.0 45 CTAGATT 20 6.3103775E-4 46.0 34 ACTATCA 30 1.860737E-6 46.0 41 CGAACCC 25 3.416282E-5 46.0 22 ACACGAT 20 6.3103775E-4 46.0 26 CGTATTG 30 1.860737E-6 46.0 40 GTATTAC 20 6.3103775E-4 46.0 35 CGACGTA 30 1.860737E-6 46.0 37 CGAAACT 25 3.416282E-5 46.0 42 CGAAACC 20 6.3103775E-4 46.0 28 ACGTTGT 30 1.860737E-6 46.0 24 >>END_MODULE