##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527477_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 622165 Sequences flagged as poor quality 0 Sequence length 50 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.314161034452276 31.0 31.0 33.0 30.0 34.0 2 31.299100720869866 33.0 31.0 34.0 28.0 34.0 3 32.05741081545892 34.0 31.0 34.0 30.0 34.0 4 36.00938014835293 37.0 35.0 37.0 35.0 37.0 5 34.27046844486591 35.0 35.0 37.0 32.0 37.0 6 35.62454172124758 36.0 35.0 37.0 35.0 37.0 7 36.075041186823434 37.0 35.0 37.0 35.0 37.0 8 36.493357871304234 37.0 37.0 37.0 35.0 37.0 9 38.51689182130142 39.0 39.0 39.0 37.0 39.0 10 37.19427483063175 39.0 37.0 39.0 34.0 39.0 11 36.82078066107865 38.0 37.0 39.0 32.0 39.0 12 36.63248012986909 38.0 35.0 39.0 33.0 39.0 13 36.82260975786166 39.0 37.0 39.0 33.0 39.0 14 37.677816977811354 39.0 37.0 40.0 33.0 40.0 15 37.7189186148369 40.0 37.0 40.0 33.0 40.0 16 37.85926241431132 40.0 37.0 40.0 34.0 40.0 17 37.76005882683854 40.0 37.0 40.0 33.0 40.0 18 37.6013340512565 39.0 37.0 40.0 33.0 40.0 19 37.52563708983951 39.0 37.0 40.0 33.0 40.0 20 37.31243158969084 39.0 36.0 40.0 33.0 40.0 21 37.214777430424405 39.0 36.0 40.0 33.0 40.0 22 37.005721954786914 38.0 36.0 40.0 33.0 40.0 23 36.77655605828036 38.0 35.0 40.0 32.0 40.0 24 36.632767834899106 38.0 35.0 40.0 32.0 40.0 25 36.40902011524274 38.0 35.0 40.0 31.0 40.0 26 35.84971992960067 38.0 35.0 39.0 30.0 40.0 27 35.68768252794677 38.0 34.0 39.0 30.0 40.0 28 35.48922552699043 37.0 34.0 39.0 30.0 40.0 29 35.126209285318204 37.0 34.0 38.0 30.0 40.0 30 34.744807245666344 36.0 33.0 38.0 29.0 40.0 31 34.64904808210041 36.0 33.0 38.0 29.0 40.0 32 34.51580850738952 36.0 33.0 38.0 29.0 39.0 33 33.9191147042987 35.0 32.0 38.0 27.0 39.0 34 33.401960894617986 35.0 32.0 38.0 26.0 39.0 35 33.32512918598764 35.0 31.0 38.0 26.0 39.0 36 32.91562366896241 34.0 31.0 37.0 26.0 38.0 37 32.70100053844237 34.0 31.0 37.0 26.0 38.0 38 32.173206464523076 34.0 30.0 36.0 24.0 38.0 39 31.39533082060225 33.0 29.0 36.0 23.0 38.0 40 31.07627076418635 33.0 29.0 35.0 23.0 38.0 41 30.839722581630276 32.0 29.0 35.0 23.0 38.0 42 30.429567719174173 32.0 28.0 35.0 22.0 37.0 43 30.013766444592672 31.0 28.0 34.0 21.0 37.0 44 29.493515385789944 31.0 27.0 34.0 21.0 36.0 45 29.08633240378356 31.0 26.0 34.0 20.0 36.0 46 28.84234407271383 31.0 26.0 34.0 20.0 36.0 47 28.404910272998322 30.0 26.0 33.0 20.0 36.0 48 27.725744778314436 29.0 24.0 33.0 18.0 35.0 49 26.941177983332395 29.0 23.0 32.0 17.0 34.0 50 30.544972796605403 32.0 28.0 34.0 23.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 6.0 12 12.0 13 20.0 14 37.0 15 53.0 16 98.0 17 163.0 18 255.0 19 429.0 20 747.0 21 1110.0 22 1716.0 23 2313.0 24 3381.0 25 4625.0 26 6222.0 27 8447.0 28 11199.0 29 14700.0 30 19600.0 31 28139.0 32 44440.0 33 66448.0 34 94113.0 35 151317.0 36 139314.0 37 22883.0 38 376.0 39 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 0.0 100.0 0.0 3 100.0 0.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 99.24939525688524 0.5910007795359752 0.10270587384375528 0.05689808973503813 8 99.50254353748603 0.3600331101878119 0.08438276020026841 0.053040592125883 9 98.24403494249918 1.1096734789002918 0.17680197375294335 0.4694896048475887 10 64.61806755442689 26.04437729541199 4.082196844888414 5.255358305272717 11 34.51946027179285 24.966688900854276 20.591161508603022 19.92268931874985 12 29.332572549082634 16.40063327252417 27.761124460553066 26.505669717840124 13 23.202848119068094 17.84430175275048 29.379987623861837 29.57286250431959 14 24.93261433864007 17.901199842485514 30.880554193823183 26.28563162505123 15 25.33588356786383 19.058449125232052 26.907813843594546 28.697853463309574 16 31.216638673020825 18.141168339588372 24.456374112976462 26.185818874414345 17 31.110236030634958 20.71861965877219 22.336357718611623 25.834786591981228 18 29.889820224538504 20.471579082719217 22.45690451889772 27.18169617384456 19 30.95850779134153 19.292952834055274 21.980985751368205 27.767553623234992 20 30.81706621233917 20.07152443483642 22.830278141650524 26.281131211173886 21 31.953259987302403 18.395441723658514 24.574188519122742 25.07710976991634 22 32.34833203410671 17.838033319135597 23.773275578021906 26.040359068735786 23 31.783047905298435 18.907685260340905 22.784309628474762 26.524957205885897 24 30.338415050669838 19.656843441852242 23.06124581099869 26.943495696479232 25 27.714191572975018 20.35183592776836 23.44056640923228 28.493406090024347 26 28.236882499015536 22.02261457973367 22.123552433839897 27.616950487410897 27 29.199488881566786 18.951403566577998 21.79437930452533 30.054728247329887 28 29.55775397201707 20.436379417035674 21.155802721143104 28.85006388980415 29 29.920198018210602 19.853415090852106 21.47758231337346 28.74880457756383 30 28.278672056448052 20.28368680333995 22.465905346652416 28.97173579355959 31 33.50027725764066 20.210715806900097 20.33881687333746 25.950190062121788 32 34.16826726029269 19.222392773621145 21.293226073469256 25.316113892616908 33 32.002121623685035 19.424268481833597 22.55993185087557 26.013678043605797 34 28.809077977706878 23.322430544951903 24.272017873072254 23.596473604268965 35 31.213906278881005 23.465800872758834 22.869978221211415 22.450314627148746 36 30.415243544718845 24.124950776723217 20.506296561201612 24.95350911735633 37 30.9694373679008 23.198347705190745 20.558372778925204 25.27384214798325 38 32.14404538988854 23.6493534673278 21.259794427523246 22.946806715260422 39 32.525455465993744 20.91888807631416 21.437721504745525 25.117934952946563 40 29.583470622744773 20.90458318934688 22.08738839375407 27.424557794154286 41 28.23479302114391 22.170646050484997 21.95044722862906 27.64411369974203 42 27.49817170686233 19.19297935435134 23.532021248382666 29.776827690403675 43 27.060667186357318 18.55472422910321 25.886702080637775 28.4979065039017 44 26.99075004219138 19.30195366180997 25.08225310006188 28.625043195936765 45 28.303102874639364 18.878754028272244 25.13465077591957 27.683492321168824 46 28.742536143948954 19.626787106314243 23.686964069017062 27.943712680719745 47 27.768357268570238 20.45293451094163 24.59829787917996 27.180410341308175 48 28.36096533877669 20.878545080485083 24.87587697797208 25.88461260276615 49 28.349232116882177 19.83219885400175 24.852571263250102 26.965997765865968 50 25.476039314329803 22.17836104570331 24.61195984987905 27.73363979008784 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 1.5 6 3.0 7 1.5 8 0.0 9 21.0 10 42.0 11 51.0 12 60.0 13 63.0 14 66.0 15 109.5 16 153.0 17 272.5 18 392.0 19 291.5 20 191.0 21 249.0 22 307.0 23 606.5 24 906.0 25 1118.0 26 1330.0 27 1449.0 28 1568.0 29 2324.5 30 3081.0 31 2806.5 32 2532.0 33 3371.5 34 4211.0 35 4704.5 36 5198.0 37 6383.5 38 7569.0 39 8576.5 40 9584.0 41 10052.0 42 10520.0 43 11017.0 44 11514.0 45 14684.5 46 17855.0 47 18444.5 48 19034.0 49 22486.0 50 25938.0 51 27641.5 52 29345.0 53 31958.0 54 34571.0 55 39355.0 56 44139.0 57 53069.5 58 62000.0 59 62076.5 60 62153.0 61 61998.0 62 61843.0 63 60372.5 64 58902.0 65 53086.0 66 47270.0 67 40195.0 68 33120.0 69 27187.0 70 21254.0 71 18938.0 72 16622.0 73 13844.0 74 11066.0 75 11394.0 76 11722.0 77 8006.0 78 4290.0 79 2800.5 80 1311.0 81 811.0 82 311.0 83 208.0 84 105.0 85 79.5 86 54.0 87 43.5 88 33.0 89 16.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 622165.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.704772849645995 #Duplication Level Percentage of deduplicated Percentage of total 1 72.02257528528075 8.430078837607386 2 9.667275448690662 2.263065264037675 3 3.4165030278895405 1.1996817564472448 4 1.4734355904041307 0.6898491557705754 5 0.7978248630240445 0.4669179397748186 6 0.5588893618774288 0.3925003817315342 7 0.3460445189019952 0.2835260742729019 8 0.2622797742471472 0.24559401444954315 9 0.2540406190351949 0.26761389663513696 >10 6.7464949260535825 22.487603770703913 >50 3.0855636268761244 24.797119735118496 >100 1.2894277906705298 27.734121977288982 >500 0.05080812380703899 3.870677392653074 >1k 0.028837043241832935 6.871649803508715 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TTGGACGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 4158 0.6683114607861258 No Hit TTGGACGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3559 0.5720347496242958 No Hit TTGGACGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 3010 0.4837944918148722 No Hit TTGGACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 2578 0.4143595348500799 No Hit TTGGACGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAG 2391 0.38430319931207957 No Hit TTGGACGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 2387 0.38366028304388705 No Hit TTGGACGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGA 2378 0.3822137214404539 No Hit TTGGACGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAA 2231 0.3585865485843787 No Hit TTGGACGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGA 1796 0.288669404418442 No Hit TTGGACGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 1790 0.2877050300161533 No Hit TTGGACGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTA 1776 0.28545482307747944 No Hit TTGGACGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCG 1752 0.28159732546832433 No Hit TTGGACGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 1725 0.2772576406580248 No Hit TTGGACGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG 1724 0.2770969115909767 No Hit TTGGACGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 1621 0.2605418176850193 No Hit TTGGACGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 1440 0.23144985654930766 No Hit TTGGACGGGGCTCTCAGCTCCTGAAGGCAAATCCCAATTCCAGAGCAAGG 1427 0.22936037867768194 No Hit TTGGACGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGC 1368 0.21987736372184227 No Hit TTGGACGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 1258 0.20219716634654797 No Hit TTGGACGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCG 1205 0.19367852579299702 No Hit TTGGACGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 1179 0.18949957004974566 No Hit TTGGACGGGGAGTCCGGAGTAGGCGAGCGAGCGAGGCAGAGGTTTTTGGT 978 0.15719302757307146 No Hit TTGGACGGGATGTATATGTGTGCATTTGTCAGTACTGTGTGTGTGTCTTT 969 0.1557464659696383 No Hit TTGGACGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTT 962 0.15462136250030137 No Hit TTGGACGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGC 956 0.1536569880980126 No Hit TTGGACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 920 0.14787074168427988 No Hit TTGGACGGGACTATATATAATTATTTCTAAAGCACAGATTAAGTAAGTTC 780 0.12536867229754164 No Hit TTGGACGGGGCTCATCAGACCCCAGAAAAGGTGTTGGTTGATATAGACAG 764 0.12279700722477158 No Hit TTGGACGGGACTCTGGGGTGGTGCTTAGCCGGCGCCAGACCGACCCTCGG 750 0.12054680028609774 No Hit TTGGACGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCC 735 0.11813586428037579 No Hit TTGGACGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 733 0.11781440614627953 No Hit TTGGACGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGGCGT 681 0.10945649465977675 No Hit TTGGACGGGGCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 657 0.10559899705062162 No Hit TTGGACGGGGAGAAACCAGTTCTCGCCGGAGCTTGGGGAAGGAAGTCTCT 652 0.10479535171538097 No Hit TTGGACGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTC 650 0.1044738935812847 No Hit TTGGACGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGC 643 0.1033487901119478 No Hit TTGGACGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 638 0.10254514477670713 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.007072078950117734 0.0 0.0 0.0 0.0 8 0.007072078950117734 0.0 0.0 0.0 0.0 9 0.007072078950117734 0.0 0.0 0.0 0.0 10 0.011251034693369123 0.0 0.0 0.0 0.0 11 0.018323113643486856 0.0 0.0 0.0 0.0 12 0.02603810886179711 0.0 0.0 0.0 0.0 13 0.03439602034829989 0.0 0.0 0.0 0.0 14 0.04130737023136949 0.0 0.0 0.0 0.0 15 0.05014746891901666 0.0 0.0 0.0 0.0 16 0.05721954786913439 0.0 0.0 0.0 0.0 17 0.06638110469087782 0.0 0.0 0.0 0.0 18 0.07602484871376564 0.0 0.0 0.0 0.0 19 0.08422203113322028 0.0 0.0 0.0 0.0 20 0.0906511938151455 0.0 0.0 0.0 0.0 21 0.09724108556411884 0.0 0.0 0.0 0.0 22 0.10254514477670715 0.0 0.0 0.0 0.0 23 0.10736701678815105 0.0 0.0 0.0 0.0 24 0.11299253413483562 0.0 0.0 0.0 0.0 25 0.11861805148152017 0.0 0.0 0.0 0.0 26 0.1255294013645898 0.0 0.0 0.0 0.0 27 0.13115491871127435 0.0 0.0 0.0 0.0 28 0.13710189419205515 0.0 0.0 0.0 0.0 29 0.14192376620349909 0.0 0.0 0.0 0.0 30 0.15237115556162753 0.0 0.0 0.0 0.0 31 0.1607290670481303 0.0 0.0 0.0 0.0 32 0.17085499827216252 0.0 0.0 0.0 0.0 33 0.1750339540154139 0.0 0.0 0.0 0.0 34 0.18467769803830172 0.0 0.0 0.0 0.0 35 0.19319633859185265 0.0 0.0 0.0 0.0 36 0.20123279194425917 0.0 0.0 0.0 0.0 37 0.20910851622961754 0.0 0.0 0.0 0.0 38 0.2163413242467834 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAT 65 0.0 44.000004 40 CGGGTTA 55 1.8189894E-12 44.0 6 TTAGGTA 25 4.4404787E-5 44.0 34 TGATATA 85 0.0 44.0 39 TAATAGG 20 7.8536937E-4 44.0 27 TCGTTAT 25 4.4404787E-5 44.0 44 GCCTTAT 30 2.5258378E-6 44.0 20 GGTACCG 30 2.5258378E-6 44.0 9 CGAACGT 30 2.5258378E-6 44.0 38 CGAGTTA 20 7.8536937E-4 44.0 30 AATCAAT 40 8.301868E-9 44.0 14 CGAAAAA 25 4.4404787E-5 44.0 34 GACGTAA 20 7.8536937E-4 44.0 42 CGTTGGC 30 2.5258378E-6 44.0 33 TTATGCA 35 1.4446596E-7 44.0 16 AACCACT 20 7.8536937E-4 44.0 14 AAGACGT 25 4.4404787E-5 44.0 20 CAACCGT 20 7.8536937E-4 44.0 39 ACCGAAT 30 2.5258378E-6 44.0 37 ATTCGTC 20 7.8536937E-4 44.0 35 >>END_MODULE