SRR1527451_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527451_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3103586
Sequences flagged as poor quality	0
Sequence length	52
%GC	53

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	69652	2.2442426277216097	No Hit
GCGAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	38478	1.2397916474684447	No Hit
GCGAATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	12055	0.38842165159915015	No Hit
GCGAATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA	10144	0.3268477174468502	No Hit
GCGAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCT	7903	0.25464092182398035	No Hit
GCGAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATTGCT	7415	0.23891717516447103	No Hit
GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTC	6301	0.20302321250321403	No Hit
GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC	6285	0.20250767982585308	No Hit
GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTC	5516	0.1777298905201918	No Hit
GCGAATGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT	5257	0.16938470530541122	No Hit
GCGAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT	5034	0.1621994686146928	No Hit
GCGAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCT	3646	0.11747700885362933	No Hit
GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATTGCTC	3598	0.11593041082154643	No Hit
GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATTGTTC	3393	0.10932514839285909	No Hit
GCGAATGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGACC	3352	0.10800409590712164	No Hit
GCGAATGGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCT	3330	0.1072952384757503	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	40	5.6170393E-9	46.0	14
ACGATAG	75	0.0	46.0	37
GCGAATG	319745	0.0	44.412453	1
CGAATGG	318680	0.0	44.404984	2
GAATGGG	315985	0.0	44.288017	3
AATGGGA	90250	0.0	44.218616	4
AATGGGG	170905	0.0	44.218193	4
ATGGGGG	77865	0.0	44.168625	5
AATGGGC	35515	0.0	44.07011	4
ATGGGAT	26605	0.0	43.79553	5
ATGGGGC	29630	0.0	43.710094	5
TGGGGGG	49045	0.0	43.589558	6
ATGGGAG	28280	0.0	43.55198	5
CGAATAG	1355	0.0	43.28413	2
ATGGGGA	39890	0.0	43.036354	5
ATGGGGT	25825	0.0	42.82943	5
ATGGGAC	14625	0.0	42.791794	5
ATGGGCG	4505	0.0	42.783573	5
ATGGGCA	18615	0.0	42.639267	5
AATGGGT	20695	0.0	42.588066	4