SRR1527417_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527417_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2117397
Sequences flagged as poor quality	0
Sequence length	50
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTAACTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC	9764	0.461132229808581	No Hit
TTAACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	8495	0.40120015282915766	No Hit
TTAACTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT	8385	0.3960050949349602	No Hit
TTAACTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT	7264	0.3430627322131844	No Hit
TTAACTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG	6635	0.31335644661818257	No Hit
TTAACTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC	4235	0.20000972892660185	No Hit
TTAACTGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG	3877	0.18310217687094107	No Hit
TTAACTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC	3159	0.14919261716154317	No Hit
TTAACTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC	2986	0.1410222079279417	No Hit
TTAACTGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCT	2921	0.1379524009904614	No Hit
TTAACTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	2562	0.12099762113576246	No Hit
TTAACTGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT	2352	0.11107978333774914	No Hit
TTAACTGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA	2280	0.1076793818070017	No Hit
TTAACTGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGC	2235	0.10555413085028457	No Hit
TTAACTGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA	2202	0.10399561348202534	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGGGAT	22205	0.0	42.147263	5
TAACTGG	218750	0.0	42.030807	2
AACTGGG	212910	0.0	42.01813	3
ACTGGGG	103310	0.0	42.00677	4
TTAACTG	220505	0.0	41.9956	1
TGGGATC	6155	0.0	41.676685	6
ACTGGGA	74935	0.0	41.639557	4
CTGGGGG	38165	0.0	41.527054	5
ACTGGGC	24075	0.0	41.295116	4
CTGGGGC	22190	0.0	41.134747	5
TGGGGGG	18430	0.0	40.94411	6
ACTGGGT	12045	0.0	40.840183	4
TGGGATT	7785	0.0	40.80668	6
CTGGGGA	27040	0.0	40.680473	5
AACCCGA	65	0.0	40.615383	30
TGGGGAG	11035	0.0	40.45129	6
CTGGGAC	12320	0.0	40.410713	5
TGGGGCT	11320	0.0	40.24912	6
TGGGATA	3485	0.0	40.212337	6
CGGTACT	55	7.8216544E-11	40.0	12