SRR1527416_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527416_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1768910
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTAACTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA	8877	0.5018344630309061	No Hit
TTAACTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG	7060	0.39911583969789305	No Hit
TTAACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	6566	0.37118903731676567	No Hit
TTAACTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	6319	0.357225636126202	No Hit
TTAACTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	5504	0.31115206539620444	No Hit
TTAACTGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC	3644	0.2060025665522836	No Hit
TTAACTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT	3582	0.20249758325748624	No Hit
TTAACTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC	2818	0.15930714394740264	No Hit
TTAACTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC	2592	0.14653091451798	No Hit
TTAACTGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCT	2256	0.1275361663397233	No Hit
TTAACTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT	2102	0.11883024009135569	No Hit
TTAACTGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAG	2009	0.11357276514915966	No Hit
TTAACTGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC	1887	0.10667586253681645	No Hit
TTAACTGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACA	1811	0.10237943140125841	No Hit
TTAACTGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCAT	1797	0.10158798356049771	No Hit
TTAACTGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGA	1788	0.10107919566286583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAA	25	3.4179087E-5	46.0	40
TACGCAC	20	6.312382E-4	46.0	10
TACGATT	25	3.4179087E-5	46.0	26
ACGTAAT	30	1.8619758E-6	46.0	24
CACGTAA	30	1.8619758E-6	46.0	23
GCGTAAC	25	3.4179087E-5	46.0	33
TAACTGG	183505	0.0	43.846706	2
AACTGGG	178450	0.0	43.828243	3
TTAACTG	184980	0.0	43.804195	1
ACTGGGG	86795	0.0	43.729015	4
CTGGGAT	19205	0.0	43.497005	5
ACTGGGA	62445	0.0	43.484344	4
CTGGGGG	31870	0.0	43.380295	5
ACTGGGC	20290	0.0	43.34746	4
TGGGATA	3060	0.0	43.218952	6
GATACGG	70	0.0	42.714287	9
TGGGATT	6745	0.0	42.658264	6
TGGGGGG	15600	0.0	42.564743	6
CTGGGAC	10440	0.0	42.519157	5
CTGGGGC	19185	0.0	42.439404	5