##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527409_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2528012 Sequences flagged as poor quality 0 Sequence length 52 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.064058240229873 31.0 31.0 33.0 30.0 34.0 2 31.785679419243262 33.0 31.0 34.0 30.0 34.0 3 32.19232384972856 34.0 31.0 34.0 30.0 34.0 4 35.90669387645312 37.0 35.0 37.0 35.0 37.0 5 34.60268780369714 35.0 35.0 37.0 32.0 37.0 6 35.70441635561856 37.0 35.0 37.0 35.0 37.0 7 36.102666047471295 37.0 35.0 37.0 35.0 37.0 8 36.43872101872934 37.0 37.0 37.0 35.0 37.0 9 38.46464652857661 39.0 39.0 39.0 37.0 39.0 10 36.65398384184885 39.0 37.0 39.0 31.0 39.0 11 36.8139051555135 39.0 37.0 39.0 32.0 39.0 12 36.76111782697234 39.0 35.0 39.0 33.0 39.0 13 36.77955682172395 39.0 37.0 39.0 33.0 39.0 14 37.57051707033036 40.0 37.0 40.0 33.0 40.0 15 37.586531234820086 40.0 37.0 40.0 33.0 40.0 16 37.66282834100471 40.0 37.0 40.0 33.0 40.0 17 37.60931949690112 40.0 37.0 40.0 33.0 40.0 18 37.55055039295699 39.0 37.0 40.0 33.0 40.0 19 37.39418839783988 39.0 37.0 40.0 32.0 40.0 20 37.31183079827153 39.0 36.0 40.0 32.0 40.0 21 37.33775512141556 39.0 36.0 40.0 32.0 40.0 22 37.226255650685204 39.0 36.0 40.0 32.0 40.0 23 37.07557321721574 39.0 36.0 40.0 32.0 40.0 24 37.08702332109183 39.0 36.0 40.0 32.0 40.0 25 37.10797654441514 39.0 36.0 40.0 32.0 40.0 26 37.01474874328128 39.0 36.0 40.0 32.0 40.0 27 36.930509032393836 39.0 35.0 40.0 32.0 40.0 28 36.71430317577607 39.0 35.0 40.0 31.0 40.0 29 36.6504783205143 38.0 35.0 40.0 31.0 40.0 30 36.51945995509515 38.0 35.0 40.0 31.0 40.0 31 36.478888154011926 38.0 35.0 40.0 31.0 40.0 32 36.36560427719488 38.0 35.0 40.0 31.0 40.0 33 36.162806189211125 38.0 35.0 40.0 30.0 40.0 34 35.863853494366325 38.0 34.0 40.0 30.0 40.0 35 35.79075217997383 38.0 34.0 40.0 30.0 40.0 36 35.71608085721112 38.0 34.0 40.0 30.0 40.0 37 35.595567584331086 38.0 34.0 40.0 29.0 40.0 38 35.480713699143834 38.0 34.0 40.0 29.0 40.0 39 35.30616982830778 37.0 34.0 40.0 29.0 40.0 40 35.572070464855386 38.0 34.0 40.0 29.0 40.0 41 35.703355442933024 38.0 34.0 40.0 30.0 40.0 42 35.74706963416313 37.0 34.0 40.0 30.0 40.0 43 35.692874875593944 37.0 34.0 40.0 30.0 40.0 44 35.57467290503368 37.0 34.0 40.0 30.0 40.0 45 35.477454220945155 37.0 34.0 40.0 30.0 40.0 46 35.175299405224344 36.0 34.0 40.0 29.0 40.0 47 35.07835484958141 36.0 34.0 40.0 29.0 40.0 48 34.963745425259056 36.0 34.0 39.0 29.0 40.0 49 34.8236032898578 35.0 34.0 39.0 29.0 40.0 50 34.67578911808963 35.0 33.0 39.0 29.0 40.0 51 34.51018349596442 35.0 33.0 39.0 28.0 40.0 52 34.042700746673674 35.0 33.0 39.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 3.0 14 23.0 15 34.0 16 98.0 17 184.0 18 388.0 19 705.0 20 1437.0 21 2315.0 22 3800.0 23 5712.0 24 8481.0 25 11890.0 26 16388.0 27 22259.0 28 29601.0 29 38585.0 30 50553.0 31 67076.0 32 89690.0 33 127609.0 34 200066.0 35 240488.0 36 366534.0 37 518540.0 38 651585.0 39 73963.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 0.0 0.0 0.0 100.0 3 0.0 100.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 99.52096746376205 0.34639867215820175 0.07654235818500861 0.0560915058947505 8 99.30910138084788 0.5002745240133354 0.10304539693640695 0.08757869820238195 9 95.65168203315491 2.6825426461583253 0.6089369828940685 1.0568383377927002 10 50.96949698023585 35.62487045156431 5.332174056135809 8.073458512064025 11 33.24022987232655 22.611245516239638 22.99890190394666 21.149622707487147 12 25.935003473084777 17.989827579932374 28.449667169301414 27.625501777681432 13 23.61946857847194 17.761070754410976 29.281031893835944 29.338428773281137 14 24.437581783630772 18.932386396900014 28.822885334405058 27.807146485064155 15 25.85327917747226 20.849505461208253 25.515701665973108 27.781513695346383 16 30.751910987764298 20.39187313984269 24.223302737487007 24.632913134906005 17 28.756904634946352 22.009824320454175 22.363817893269495 26.86945315132998 18 28.92632629908402 19.364227701450783 23.075839829874226 28.63360616959097 19 31.60950185363044 20.04017385993421 22.324182005465165 26.026142280970184 20 31.3678890764759 20.255797836402675 22.845421619834084 25.530891467287336 21 31.652816521440563 19.30069952199594 24.379077314506418 24.66740664205708 22 30.245307379870034 19.25975826064117 24.356213498986556 26.138720860502247 23 28.027042593152245 22.078099312819717 24.193437372923864 25.701420721104174 24 28.21932807280978 20.702275147428097 24.471323712070987 26.607073067691132 25 26.99852690572671 21.411409439512155 23.49541853440569 28.094645120355445 26 26.708259296237518 21.10654538032256 23.345379689653374 28.839815633786547 27 28.169249196601914 19.187488034075788 22.882525874086042 29.760736895236256 28 29.044917508302966 21.77810073686359 22.245345354373317 26.931636400460125 29 28.888233125475672 20.27134364868521 23.094550184097226 27.74587304174189 30 28.27961259677565 20.94606354716671 23.01326101300152 27.761062843056123 31 30.91678362286255 20.98747948981255 21.783440901388126 26.312295985936775 32 31.366109021634394 20.22747518603551 22.91357794187686 25.492837850453242 33 31.17323019036302 20.470551563837514 23.12129056349416 25.234927682305308 34 27.33547150883777 23.28568851730134 25.610756594509837 23.768083379351047 35 28.969284955925843 23.266147470818968 24.295019169212804 23.46954840404239 36 29.33993193070286 23.086520158923296 21.854880435694135 25.71866747467971 37 28.980716863685775 23.76278277160077 22.356658117129193 24.899842247584267 38 30.529087678381273 23.09633023893874 22.56235334325945 23.81222873942054 39 29.69792073771802 21.458640227973603 22.081817649599763 26.76162138470862 40 27.513120982020656 22.593998762664103 23.221606543006917 26.67127371230833 41 27.172853609872107 21.829999224687224 22.773902971979563 28.223244193461106 42 25.98496367896988 19.83254035186542 24.544938868961065 29.637557100203637 43 25.921316829192264 19.9602296191632 26.221157178051367 27.89729637359316 44 26.3291076149955 20.543850266533546 25.013488860021234 28.113553258449723 45 27.302916283625233 20.384476023056852 24.17144380643763 28.141163886880282 46 26.727919013042662 22.02651727919013 24.001310120363353 27.244253587403854 47 27.5603517704821 22.246808955020782 24.77365613770821 25.41918313678891 48 27.49480619554021 21.892894495753975 25.210204698395415 25.402094610310392 49 27.154578380165916 21.946493924870612 23.830622639449498 27.068305055513974 50 25.207237940326234 22.824614756575524 24.802809480334744 27.1653378227635 51 26.25031052067791 22.530391469660746 24.100281169551412 27.11901684010994 52 27.02265653802276 22.53074748062905 23.661754770151408 26.78484121119678 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 23.5 8 47.0 9 36.0 10 25.0 11 59.0 12 93.0 13 373.0 14 1253.5 15 1854.0 16 2664.0 17 3474.0 18 3013.0 19 2552.0 20 2524.0 21 2496.0 22 2548.5 23 2601.0 24 2942.0 25 3283.0 26 4426.0 27 5569.0 28 6438.5 29 7308.0 30 9065.5 31 10823.0 32 13048.5 33 15274.0 34 16615.0 35 17956.0 36 22457.0 37 26958.0 38 30111.5 39 39071.0 40 44877.0 41 46748.5 42 48620.0 43 52756.0 44 56892.0 45 60217.0 46 63542.0 47 68553.0 48 73564.0 49 86850.0 50 100136.0 51 104147.5 52 108159.0 53 116577.5 54 124996.0 55 135606.5 56 146217.0 57 154593.5 58 162970.0 59 185438.0 60 207906.0 61 218435.0 62 228964.0 63 226673.0 64 220644.0 65 216906.0 66 193880.0 67 170854.0 68 150977.0 69 131100.0 70 108685.5 71 86271.0 72 77553.5 73 68836.0 74 58752.0 75 48668.0 76 47541.5 77 46415.0 78 34140.0 79 21865.0 80 14563.5 81 7262.0 82 5203.0 83 3144.0 84 2002.0 85 860.0 86 544.5 87 229.0 88 155.5 89 66.5 90 51.0 91 30.5 92 10.0 93 6.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2528012.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.01442183508786 #Duplication Level Percentage of deduplicated Percentage of total 1 67.53129674566284 6.087555959359008 2 10.628266568063943 1.9161535644057985 3 4.119523199832882 1.114053596481736 4 1.8892339264511278 0.6812140623275927 5 1.0125153814417973 0.45636203814156256 6 0.6397109042566664 0.3459974366085056 7 0.43994013434615215 0.2776064167227008 8 0.35498592992470035 0.255999433428975 9 0.29137863943618075 0.23639489726505303 >10 7.42459900653456 19.117407230176493 >50 3.749679054906254 23.546639968309623 >100 1.7854566118803032 30.359389328937507 >500 0.09290538720264956 5.5849359421998415 >1k 0.03478448146449912 6.38110555512145 >5k 0.005283718703468221 3.145622122900609 >10k+ 4.403098919556851E-4 0.4935624476135501 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCAGACGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 12435 0.4918884878711019 No Hit CCAGACGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 9262 0.3663748431573901 No Hit CCAGACGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGG 7966 0.31510926372184944 No Hit CCAGACGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT 7096 0.2806948701192874 No Hit CCAGACGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 6892 0.2726252881711005 No Hit CCAGACGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 6750 0.2670082262267742 No Hit CCAGACGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 6467 0.25581365911237763 No Hit CCAGACGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 6401 0.2532029120114936 No Hit CCAGACGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGA 6127 0.24236435586539937 No Hit CCAGACGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCT 5841 0.2310511184282353 No Hit CCAGACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 5588 0.22104325454151325 No Hit CCAGACGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 5519 0.21831383711786176 No Hit CCAGACGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 5343 0.21135184484883776 No Hit CCAGACGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCGC 4912 0.19430287514458003 No Hit CCAGACGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGA 4767 0.18856714287748635 No Hit CCAGACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 4589 0.18152603705995066 No Hit CCAGACGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAG 4508 0.17832193834522939 No Hit CCAGACGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCAT 3809 0.1506717531404123 No Hit CCAGACGGGGGAGTGGCCTTGTTCTCGATACTTCGTTGTGGTTGTGAACTCT 3779 0.14948504991273776 No Hit CCAGACGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCT 3688 0.14588538345545826 No Hit CCAGACGGGCTCTCAGCTCCTGAAGGCAAATCCCAATTCCAGAGCAAGGAAA 3602 0.1424835008694579 No Hit CCAGACGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCCG 3529 0.13959585634878316 No Hit CCAGACGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTG 3477 0.1375389040874806 No Hit CCAGACGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 3335 0.1319218421431544 No Hit CCAGACGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3212 0.12705635890968872 No Hit CCAGACGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCAT 3033 0.11997569631789723 No Hit CCAGACGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGAT 3014 0.11922411760703668 No Hit CCAGACGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAG 2773 0.10969093501138445 No Hit CCAGACGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGCTGC 2755 0.10897891307477969 No Hit CCAGACGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTT 2666 0.10545836016601186 No Hit CCAGACGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGCTG 2619 0.10359919177598842 No Hit CCAGACGGGGCACTGTTTGCTGCTTTAGGTGTCTCTTTTCCTCCCTCTCTAT 2549 0.10083021757808111 No Hit CCAGACGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTC 2544 0.10063243370680203 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0011075896791629153 0.0 0.0 0.0 0.0 8 0.0018196116157676466 0.0 0.0 0.0 0.0 9 0.002136065809814194 0.0 0.0 0.0 0.0 10 0.009889193563954601 0.0 0.0 0.0 0.0 11 0.01736542389830428 0.0 0.0 0.0 0.0 12 0.02499988132967723 0.0 0.0 0.0 0.0 13 0.03184320327593382 0.0 0.0 0.0 0.0 14 0.03896342264198113 0.0 0.0 0.0 0.0 15 0.04786369684954027 0.0 0.0 0.0 0.0 16 0.05379721298791303 0.0 0.0 0.0 0.0 17 0.058979150415425244 0.0 0.0 0.0 0.0 18 0.06546646139337946 0.0 0.0 0.0 0.0 19 0.07294269172772914 0.0 0.0 0.0 0.0 20 0.07859931044631117 0.0 0.0 0.0 0.0 21 0.08429548593914903 0.0 0.0 0.0 0.0 22 0.08971476401219615 0.0 0.0 0.0 0.0 23 0.09549005305354563 0.0 0.0 0.0 0.0 24 0.10142356919191839 0.0 0.0 0.0 0.0 25 0.1072384150075237 0.0 0.0 0.0 0.0 26 0.1136861692112221 0.0 0.0 0.0 0.0 27 0.12167663761089742 0.0 0.0 0.0 0.0 28 0.13488860021234075 0.0 0.0 0.0 0.0 29 0.1420879331268997 0.0 0.0 0.0 0.0 30 0.15245180798192415 0.0 0.0 0.0 0.0 31 0.15996759509052963 0.0 0.0 0.0 0.0 32 0.1672064847793444 0.0 0.0 0.0 0.0 33 0.17337734156325207 0.0 0.0 0.0 0.0 34 0.1833060919014625 0.0 0.0 0.0 0.0 35 0.19746741708504548 0.0 0.0 0.0 0.0 36 0.2071983835519768 0.0 0.0 0.0 0.0 37 0.21503062485462884 0.0 0.0 0.0 0.0 38 0.22412868293346708 0.0 0.0 0.0 0.0 39 0.2318818106876075 0.0 0.0 0.0 0.0 40 0.24010961973281772 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTACG 45 3.110472E-10 46.000004 11 GCGTAAC 30 1.8622959E-6 46.0 31 CGGGATA 3195 0.0 43.912365 6 ACGGGAG 33570 0.0 43.75961 5 GACGGGA 91115 0.0 43.59183 4 ACGGGAT 25725 0.0 43.550243 5 ACGGGTA 2590 0.0 43.51351 5 CAGACGG 264645 0.0 43.461395 2 CCAGACG 266390 0.0 43.451256 1 AGACGGG 253445 0.0 43.410007 3 ACGGGAC 16010 0.0 43.18426 5 ACGGGGG 43980 0.0 43.102776 5 GACGGGG 131010 0.0 43.050606 4 ACGGGGA 34070 0.0 43.00939 5 ACGGGGC 32130 0.0 42.950516 5 ACGGGAA 16155 0.0 42.78242 5 AGACGGA 7295 0.0 42.75257 3 CGGGAGT 10140 0.0 42.733727 6 GACGGGC 20515 0.0 42.61418 4 ACGGGCT 10375 0.0 42.49735 5 >>END_MODULE