##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527342_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 430389 Sequences flagged as poor quality 0 Sequence length 50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.377721084879028 31.0 30.0 33.0 27.0 33.0 2 30.94008908220238 31.0 31.0 33.0 28.0 34.0 3 31.776353484870665 33.0 31.0 34.0 30.0 34.0 4 35.61293155726564 37.0 35.0 37.0 33.0 37.0 5 36.03585128802084 37.0 35.0 37.0 35.0 37.0 6 36.2102237743065 37.0 36.0 37.0 35.0 37.0 7 36.36168210618766 37.0 37.0 37.0 35.0 37.0 8 36.55167302138298 37.0 37.0 37.0 35.0 37.0 9 38.47158036102224 39.0 39.0 39.0 37.0 39.0 10 36.72064574141068 39.0 37.0 39.0 32.0 39.0 11 36.840918332020564 38.0 37.0 39.0 32.0 39.0 12 36.414051009668 37.0 35.0 39.0 33.0 39.0 13 36.495333291510704 38.0 35.0 39.0 33.0 39.0 14 37.19453099405422 39.0 36.0 40.0 33.0 40.0 15 37.286605837974484 39.0 36.0 40.0 33.0 40.0 16 37.41725508783914 39.0 36.0 40.0 33.0 40.0 17 37.388669320080204 39.0 36.0 40.0 33.0 40.0 18 37.25913301687543 39.0 36.0 40.0 33.0 40.0 19 37.18055758860008 39.0 35.0 40.0 33.0 40.0 20 36.99094540055624 38.0 35.0 40.0 33.0 40.0 21 36.93783763060859 38.0 35.0 40.0 33.0 40.0 22 36.81211648067214 38.0 35.0 40.0 33.0 40.0 23 36.576120672229074 38.0 35.0 40.0 32.0 40.0 24 36.441047517478374 38.0 35.0 40.0 32.0 40.0 25 36.29605078196701 38.0 35.0 39.0 32.0 40.0 26 35.80437000016264 38.0 34.0 39.0 31.0 40.0 27 35.641935551326824 37.0 34.0 39.0 31.0 40.0 28 35.499850135575024 37.0 34.0 38.0 31.0 40.0 29 35.19853434915855 36.0 34.0 38.0 30.0 40.0 30 34.87122347457765 36.0 34.0 38.0 30.0 40.0 31 34.784708716997876 36.0 34.0 38.0 30.0 39.0 32 34.65628071349407 36.0 33.0 38.0 29.0 39.0 33 34.040433189509955 35.0 33.0 38.0 28.0 39.0 34 33.40000789983015 35.0 32.0 38.0 25.0 39.0 35 33.27942860993195 35.0 31.0 38.0 26.0 39.0 36 33.08384740316318 34.0 31.0 37.0 26.0 38.0 37 33.03284238212408 34.0 31.0 37.0 26.0 38.0 38 32.61903533779906 34.0 31.0 37.0 26.0 38.0 39 31.95945528347611 34.0 30.0 36.0 24.0 38.0 40 31.708194215000848 33.0 30.0 36.0 23.0 38.0 41 31.489710471224868 33.0 30.0 36.0 23.0 38.0 42 31.06299649851646 33.0 29.0 35.0 23.0 38.0 43 30.5266956172207 32.0 28.0 35.0 22.0 37.0 44 29.93500995610947 31.0 27.0 34.0 21.0 37.0 45 29.259277072601762 31.0 26.0 34.0 20.0 37.0 46 29.047487273141275 31.0 26.0 34.0 20.0 37.0 47 28.52762036204457 30.0 25.0 34.0 19.0 36.0 48 28.052647721015173 30.0 24.0 33.0 18.0 35.0 49 27.681994660644207 29.0 24.0 33.0 18.0 35.0 50 31.642590772533683 33.0 30.0 36.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 8.0 13 16.0 14 30.0 15 55.0 16 76.0 17 148.0 18 227.0 19 298.0 20 493.0 21 774.0 22 1077.0 23 1517.0 24 2111.0 25 2948.0 26 3874.0 27 5355.0 28 7094.0 29 9972.0 30 13334.0 31 19157.0 32 32674.0 33 47984.0 34 57315.0 35 100897.0 36 106844.0 37 15801.0 38 306.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 100.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 98.66609044376135 1.095288216009238 0.12523554272994897 0.11338579749947142 8 98.38471708152392 0.36548331857923877 0.14684390167964328 1.1029556982171942 9 96.42230633217856 2.2849096979709054 0.3643215788507606 0.9284623909997699 10 50.75966160845189 35.34895176224299 4.306801521414348 9.584585107890769 11 37.88293845799962 20.460327750012198 23.63025077313779 18.02648301885039 12 34.314306360060314 15.419306720199632 25.483457988006197 24.78292893173385 13 26.80180023188325 15.20229373891991 30.47638299305977 27.519523036137077 14 25.360778272678903 17.458392291624552 33.23853537148951 23.942294064207033 15 27.786258477795666 18.473752814314494 29.490530659473173 24.249458048416663 16 32.78383044176315 21.281910085991974 24.833348435949805 21.100911036295074 17 32.514306824756204 20.455216095206893 25.768781265320445 21.261695814716454 18 30.763565053939573 20.59601895029845 25.851264786042393 22.78915120971958 19 29.817676567012636 24.309636166351837 23.77941815427439 22.093269112361146 20 29.826505788949063 24.419769092611567 24.290815982750487 21.462909135688875 21 27.927526028778615 25.23159281487213 25.918413342348433 20.92246781400082 22 27.415198808519737 22.485472444695382 27.90963523696005 22.18969350982483 23 28.822065619706823 23.145805306362384 25.54619193334402 22.48593714058677 24 29.84648771227889 21.489629149443875 24.34100313902075 24.322879999256486 25 28.60644672610127 22.573067620222638 22.123009649410186 26.69747600426591 26 23.914179962777858 23.14441121868821 25.278062404011255 27.663346414522678 27 22.746631535657276 20.9928692415466 24.812669468782893 31.447829754013227 28 25.525048270285716 24.657693389003903 22.972241390927742 26.84501694978264 29 29.309299261830578 23.881883598326166 22.00172402175706 24.807093118086197 30 28.346914070759244 21.130883921289808 25.404227338523988 25.117974669426964 31 32.3760597970673 20.563257889955366 24.099128927551586 22.96155338542574 32 32.85655534876588 20.314645588061033 24.841015918157762 21.987783145015324 33 33.565448931083274 20.664096898387275 24.11283745634763 21.65761671418182 34 26.58246377114657 23.60678363062253 29.036755121529595 20.773997476701307 35 25.52272479082876 27.993280497410485 26.118464923592377 20.365529788168377 36 25.902381334095438 28.867838165008862 25.518077831914848 19.711702668980852 37 29.495874662224175 27.776499864076452 21.417601286278227 21.31002418742115 38 27.98468362341974 29.234250875370886 22.465258173419862 20.31580732778951 39 29.997746224926754 25.594287958103017 22.16320584401553 22.2447599729547 40 25.458596757816764 24.335659136269747 23.463657296074018 26.74208680983947 41 24.586594917621035 27.133360750390928 21.668769415575213 26.611274916412825 42 22.915083796286613 23.216439081853856 24.971363115693013 28.897114006166515 43 24.09401727274628 24.01060436024155 22.440861639121817 29.45451672789035 44 24.4234866597427 22.122777301464488 24.76736161937224 28.686374419420567 45 26.46559275446166 21.84093924333568 24.089602661778066 27.603865340424594 46 26.40982924749471 25.427229785147855 23.42253170968589 24.740409257671548 47 24.585433177892558 24.593100660100514 24.584503786109778 26.236962375897154 48 26.02831392066247 24.435568752918872 25.491822514051243 24.04429481236742 49 26.820620415484598 22.959229905968787 25.28689162594769 24.933258052598926 50 24.51665818596665 21.362302475202664 26.79111222638125 27.329927112449436 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.5 4 3.0 5 2.5 6 2.0 7 2.0 8 2.0 9 47.0 10 92.0 11 207.5 12 323.0 13 380.0 14 437.0 15 478.0 16 519.0 17 646.0 18 773.0 19 764.0 20 755.0 21 1005.5 22 1256.0 23 1214.5 24 1173.0 25 1499.0 26 1825.0 27 1981.5 28 2138.0 29 3183.0 30 4228.0 31 5575.5 32 6923.0 33 7247.5 34 7572.0 35 9186.0 36 10800.0 37 10795.0 38 10790.0 39 11574.5 40 12359.0 41 13436.0 42 14513.0 43 15597.5 44 16682.0 45 18341.0 46 20000.0 47 22067.0 48 24134.0 49 24205.0 50 24276.0 51 25141.0 52 26006.0 53 27973.0 54 29940.0 55 33802.0 56 37664.0 57 37342.0 58 37020.0 59 39412.0 60 41804.0 61 41279.5 62 40755.0 63 31492.0 64 22229.0 65 16574.0 66 10919.0 67 8586.0 68 6253.0 69 5964.5 70 5676.0 71 5314.5 72 4953.0 73 3983.5 74 3014.0 75 2034.5 76 1055.0 77 1125.0 78 1195.0 79 743.0 80 291.0 81 162.5 82 34.0 83 19.0 84 4.0 85 3.0 86 2.0 87 1.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 430389.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.269830316295259 #Duplication Level Percentage of deduplicated Percentage of total 1 71.62740493864565 8.788561045937513 2 9.271322526889865 2.2751510842516884 3 3.257082260263596 1.1989153997894928 4 1.49409180427208 0.733290116615434 5 0.7479927283744887 0.45888719274888534 6 0.5794576579306165 0.42659082829719164 7 0.41660354491743673 0.3578158363712827 8 0.36547492804120585 0.3587452281540653 9 0.35979397061051355 0.3973149871395412 >10 8.311240721102864 27.000225377507327 >50 2.243978185123466 18.861541535680512 >100 1.2725344644750796 30.574898522034715 >500 0.039766702014846236 3.239162710942891 >1k 0.01136191486138464 3.6467010076930406 >5k 0.00189365247689744 1.68219912683642 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source ATCAACGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 7240 1.68219912683642 No Hit ATCAACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 4520 1.0502127145442843 No Hit ATCAACGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 3708 0.8615461826394262 No Hit ATCAACGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 2383 0.5536851545927057 No Hit ATCAACGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 2082 0.48374842293831855 No Hit ATCAACGGGTACTTCATTATTCTCATCTAGCAAACTGGATCCTTCAAATG 1636 0.380121239158064 No Hit ATCAACGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 1366 0.31738729382024167 No Hit ATCAACGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 851 0.19772810178698805 No Hit ATCAACGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 830 0.19284879492737966 No Hit ATCAACGGGGATCAGTGGTAGCTTAACAACCTCTGGATTGATTGTGTATA 830 0.19284879492737966 No Hit ATCAACGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCAC 801 0.18611070450220615 No Hit ATCAACGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA 765 0.17774617845716317 No Hit ATCAACGGGGGGGGCTGGCGAGATAGCTCAGTGGTTAAGAGCACCGACTG 763 0.1772814825657719 No Hit ATCAACGGGTGTGTGTGTGTATGTGCCTGTGTATGTGTGCCTGTGTGTAT 743 0.17263452365185913 No Hit ATCAACGGGGGGCTGGCGAGATGGCTCAGCGGGTAAGAGCACTGACTGCT 711 0.16519938938959872 No Hit ATCAACGGGGGGGGGCTGGCGAGATAGCTCAGTGGTTAAGAGCACCGACT 703 0.16334060582403362 No Hit ATCAACGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCAT 690 0.1603200825299903 No Hit ATCAACGGGCGGGGAAGGTGACAGCATTGCTTCTGTGTAAATTATGTACT 687 0.1596230386929034 No Hit ATCAACGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGC 663 0.15404668799620808 No Hit ATCAACGGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACT 612 0.14219694276573053 No Hit ATCAACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGGCTG 582 0.1352265043948614 No Hit ATCAACAGGCAGAACACTGTTGTGGGACTATCCTTGTTTGGTCTTTGATT 572 0.132903024937905 No Hit ATCAACGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 557 0.12941780575247044 No Hit ATCAACGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 525 0.12198267149021003 No Hit ATCAACGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGGCGT 522 0.1212856276531231 No Hit ATCAACGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCT 520 0.12082093176173184 No Hit ATCAACGGGACTTGACTGCAGAGGGAGCGCTGCTTGCTGAGTCAGAGGAT 511 0.11872980025047108 No Hit ATCAACGGGACTGTCCCTCAGCACTGCTCCTCTCTTGCTGATCTTTTAGC 503 0.11687101668490599 No Hit ATCAACGGGACGGTAGAACACTGCAGCTGTCGCCAGGGTTACAGTGCGCA 495 0.11501223311934088 No Hit ATCAACGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA 493 0.11454753722794961 No Hit ATCAACGGGGCACCTGGTCCTCCGTCTGAGGGGTGGCTATTAATTATTCG 490 0.11385049339086269 No Hit ATCAACGGGCAAGGGGCTCCCCCCTCTGCTCTGCACCAGCCCGCCCTGGG 485 0.1126887536623845 No Hit ATCAACGGGGGGGCTGAAGAGATGGCTCAGAGGTTAAGAGCAGTGGCTAC 482 0.11199170982529759 No Hit ATCAACGGGGCCTCGTCCGTGGTCGTTCCGCGCCGTCATGTCTGTCCTGA 481 0.11175936187960195 No Hit ATCAACGGGGGTGGGCGGACCGCGCTGCTGGAGGTGTGAGGAGCTTAGAC 475 0.11036527420542812 No Hit ATCAACGGGGGCCGTCATGTCTGTCCTGACGCCACTGCTGCTGAGGAGCC 474 0.11013292625973248 No Hit ATCAACGGGGGGCCTTTCAGGAATACCACGACGCTACTCAGACTACCCAG 453 0.10525361940012408 No Hit ATCAACGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTT 448 0.10409187967164589 No Hit ATCAACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 443 0.1029301399431677 No Hit ATCAACGGGGCCCCAGTCACTGAGCCGCCGCCGAGGACTCAGCTGCCTCC 442 0.10269779199747206 No Hit ATCAACGGGCCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCC 442 0.10269779199747206 No Hit ATCAACGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGC 438 0.10176840021468951 No Hit ATCAACGGGGTCCTACCCTCCAGCCAAGGTAGAATCTTGCCAAGCCTAGC 438 0.10176840021468951 No Hit ATCAACGGGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGGCGAAGGA 436 0.10130370432329823 No Hit ATCAACGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC 434 0.10083900843190696 No Hit ATCAACGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 431 0.10014196459482004 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0030205232940432956 0.0 0.0 0.0 0.0 8 0.005111654805304039 0.0 0.0 0.0 0.0 9 0.017890791818564136 0.0 0.0 0.0 0.0 10 0.022770098678172538 0.0 0.0 0.0 0.0 11 0.03438749596295444 0.0 0.0 0.0 0.0 12 0.04228732611660614 0.0 0.0 0.0 0.0 13 0.049025416541779644 0.0 0.0 0.0 0.0 14 0.054601767238474964 0.0 0.0 0.0 0.0 15 0.06250159739212666 0.0 0.0 0.0 0.0 16 0.14777329346242585 0.0 0.0 0.0 0.0 17 0.15497607977899064 0.0 0.0 0.0 0.0 18 0.16171417020416415 0.0 0.0 0.0 0.0 19 0.17031104419490276 0.0 0.0 0.0 0.0 20 0.1761197428372937 0.0 0.0 0.0 0.0 21 0.1847166168280323 0.0 0.0 0.0 0.0 22 0.19238409903598838 0.0 0.0 0.0 0.0 23 0.20191036480950952 0.0 0.0 0.0 0.0 24 0.20911315112607431 0.0 0.0 0.0 0.0 25 0.21654828538833473 0.0 0.0 0.0 0.0 26 0.2242157675962908 0.0 0.0 0.0 0.0 27 0.2425712553062462 0.0 0.0 0.0 0.0 28 0.2537239566996368 0.0 0.0 0.0 0.0 29 0.26069439507050596 0.0 0.0 0.0 0.0 30 0.2692912690612446 0.0 0.0 0.0 0.0 31 0.2795145786718527 0.0 0.0 0.0 0.0 32 0.28927319239106947 0.0 0.0 0.0 0.0 33 0.2978700663818081 0.0 0.0 0.0 0.0 34 0.3083257239381118 0.0 0.0 0.0 0.0 35 0.32249894862554573 0.0 0.0 0.0 0.0 36 0.34085443633550117 0.0 0.0 0.0 0.0 37 0.35479531307723944 0.0 0.0 0.0 0.0 38 0.37082732133023844 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCGT 20 7.850987E-4 44.0 15 ATTTACG 20 7.850987E-4 44.0 21 CATGGTA 20 7.850987E-4 44.0 30 GTCATAA 25 4.4381846E-5 44.0 31 CGGAATT 20 7.850987E-4 44.0 21 CAGCGTC 25 4.4381846E-5 44.0 19 TAATAGG 40 8.290954E-9 44.0 16 CCTTATA 35 1.443259E-7 44.0 30 TCGTTTG 30 2.5240115E-6 44.0 21 CGGAACA 20 7.850987E-4 44.0 13 TCGTTAG 30 2.5240115E-6 44.0 14 GTCGCCC 30 2.5240115E-6 44.0 23 GGTACCG 25 4.4381846E-5 44.0 9 ACCGGCC 20 7.850987E-4 44.0 32 CGTATGA 20 7.850987E-4 44.0 29 GTCGAGG 30 2.5240115E-6 44.0 38 GATCGAG 45 4.783942E-10 44.0 38 CGAGTAG 20 7.850987E-4 44.0 32 CCTAGTA 30 2.5240115E-6 44.0 42 CGACGAC 20 7.850987E-4 44.0 28 >>END_MODULE