##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527333_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1195806 Sequences flagged as poor quality 0 Sequence length 50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.399161736937263 31.0 31.0 33.0 30.0 34.0 2 31.324123645474266 33.0 31.0 34.0 30.0 34.0 3 31.479172206862987 31.0 31.0 34.0 30.0 34.0 4 35.0792937984924 35.0 35.0 37.0 33.0 37.0 5 35.61573616456181 37.0 35.0 37.0 35.0 37.0 6 36.07760623378709 37.0 35.0 37.0 35.0 37.0 7 36.53311406699749 37.0 37.0 37.0 35.0 37.0 8 36.60708676825505 37.0 37.0 37.0 35.0 37.0 9 38.36276118367026 39.0 39.0 39.0 37.0 39.0 10 34.6833240508912 35.0 35.0 37.0 31.0 39.0 11 34.43993507308041 35.0 33.0 39.0 26.0 39.0 12 34.74683184396131 35.0 33.0 39.0 27.0 39.0 13 35.13057051060122 35.0 34.0 39.0 31.0 39.0 14 35.82818366858838 35.0 35.0 40.0 32.0 40.0 15 35.90971528826582 35.0 35.0 40.0 32.0 40.0 16 36.0997034636053 36.0 35.0 40.0 33.0 40.0 17 35.98773965007702 35.0 35.0 40.0 32.0 40.0 18 35.87710381115331 35.0 34.0 40.0 32.0 40.0 19 35.79921743159007 35.0 34.0 40.0 32.0 40.0 20 35.63135659128655 35.0 34.0 40.0 31.0 40.0 21 35.53432747452346 35.0 34.0 40.0 31.0 40.0 22 35.39610103980077 35.0 34.0 39.0 31.0 40.0 23 35.24654584439282 35.0 34.0 39.0 31.0 40.0 24 35.16783909764627 35.0 34.0 38.0 31.0 40.0 25 34.934306233619836 35.0 34.0 38.0 30.0 40.0 26 34.53996467654452 35.0 34.0 38.0 30.0 40.0 27 34.426470514448 35.0 33.0 38.0 30.0 40.0 28 34.28882276891068 35.0 33.0 38.0 30.0 40.0 29 34.05057174826017 35.0 33.0 38.0 29.0 39.0 30 33.73380631975421 34.0 33.0 38.0 29.0 39.0 31 33.5831489388747 34.0 32.0 37.0 28.0 39.0 32 33.50295951015466 34.0 32.0 37.0 27.0 39.0 33 32.98360520017461 34.0 32.0 37.0 25.0 38.0 34 32.418291930296384 34.0 31.0 36.0 23.0 38.0 35 32.31073685865433 34.0 31.0 36.0 23.0 38.0 36 32.236313415386775 34.0 31.0 36.0 23.0 38.0 37 32.23588525229009 34.0 31.0 36.0 24.0 38.0 38 31.797466311425097 33.0 30.0 35.0 23.0 38.0 39 31.042146468574334 33.0 29.0 35.0 23.0 38.0 40 30.796299734237827 33.0 29.0 35.0 22.0 37.0 41 30.593143034907 32.0 29.0 34.0 22.0 37.0 42 30.227199060717208 32.0 28.0 34.0 22.0 37.0 43 29.65947068337172 31.0 27.0 34.0 21.0 36.0 44 29.207692552136383 31.0 27.0 34.0 20.0 36.0 45 28.790067954166478 31.0 25.0 34.0 20.0 36.0 46 28.68287749016145 31.0 24.0 34.0 20.0 35.0 47 28.24271244666777 30.0 24.0 33.0 19.0 35.0 48 27.78888297934615 30.0 23.0 33.0 18.0 35.0 49 27.312418569567303 29.0 24.0 32.0 18.0 34.0 50 30.771116719601675 32.0 29.0 34.0 23.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 6.0 11 9.0 12 27.0 13 51.0 14 125.0 15 237.0 16 438.0 17 659.0 18 1065.0 19 1601.0 20 2441.0 21 3424.0 22 4727.0 23 6318.0 24 8661.0 25 11338.0 26 14546.0 27 19401.0 28 26386.0 29 35979.0 30 55253.0 31 99061.0 32 180779.0 33 191460.0 34 113506.0 35 188299.0 36 198315.0 37 31103.0 38 591.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 100.0 0.0 4 0.0 100.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 99.30615835679032 0.5793581902081106 0.09056653002242838 0.023916922979145445 8 99.23106256365999 0.569657620048737 0.12058812215359348 0.07869169413767785 9 94.53615385773277 2.909000289344593 1.9137719663557466 0.6410738865668846 10 49.60336375632836 40.27827256260631 3.761897832926077 6.356465848139246 11 40.01067062717531 20.223681767778384 25.356872268578684 14.408775336467622 12 34.093573706771835 17.19794013410202 23.502558107251513 25.205928051874636 13 26.733182472742236 17.005684868615813 28.23551646337282 28.02561619526913 14 26.981968647088237 18.00057868918537 29.76151650016809 25.255936163558303 15 29.206493360963233 21.350704043967 26.941326603144656 22.501475991925112 16 35.11673298177129 23.79666935941114 22.434993636091473 18.651604022726094 17 30.990729265449414 23.465846466734572 24.367246861112925 21.176177406703093 18 31.376326929284517 23.297006370598574 23.602156202594735 21.72451049752217 19 29.243288627084997 26.847665925743808 22.714470407407223 21.194575039763976 20 31.061894655153093 24.99619503498059 23.064443563588075 20.87746674627824 21 28.93646628299239 26.335960849836848 25.26078644863799 19.466786418532774 22 27.86890181183235 20.638464767696433 29.151467712990236 22.34116570748098 23 28.11885874464587 22.358727084493637 27.732508450367366 21.789905720493124 24 30.484627105065538 22.43298662157574 24.75217552010945 22.330210753249272 25 26.826926775747907 23.817324883802222 23.92704167732893 25.42870666312094 26 24.58743307860974 25.862639926543267 26.171636536361248 23.37829045848574 27 23.24022458492431 22.932900487202772 25.728588082013303 28.09828684585961 28 22.933820368855816 27.188022137370112 24.197236006509417 25.68092148726466 29 29.04492869244677 24.618123675579483 22.926043187607352 23.41090444436639 30 26.985062794466664 22.022970281132558 26.252502496224306 24.73946442817648 31 28.87215819288413 22.17174023211123 25.190624566192177 23.765477008812468 32 30.94122290739468 22.90037012692694 24.427791799004186 21.730615166674195 33 31.262010727492584 22.33731892965916 25.18878480288609 21.211885539962168 34 26.690031660653986 24.049720439603078 28.870067552763572 20.39018034697936 35 24.056410487988856 28.894068101347543 26.451698686910753 20.59782272375285 36 24.703505418102935 30.057718392448272 24.010416405336652 21.22835978411214 37 29.466987119984346 27.388389086524068 21.88264651624093 21.261977277250658 38 27.096033972065705 29.524270659287545 21.835899803145324 21.543795565501426 39 29.37959836294516 24.56025475704253 23.257451459517682 22.80269542049463 40 26.53381903084614 23.648401162061404 22.568376475782863 27.249403331309598 41 23.49979846229238 27.57955721914759 23.20543633331828 25.715207985241754 42 22.768659799332 24.350019986519552 23.197910028884284 29.683410185264165 43 22.41467261411968 23.519199602611128 25.91281528943658 28.153312493832612 44 24.674236456415173 22.571637874370925 23.910065679550026 28.844059989663872 45 26.19070317426071 23.773588692480217 23.838482161822235 26.19722597143684 46 24.861892313636158 26.933549421896192 22.499218100594913 25.705340163872737 47 23.69723851527756 24.814894723726088 25.29365131133311 26.19421544966324 48 25.869497226138687 23.133016559542266 27.23744486982002 23.760041344499026 49 27.58014259838134 22.662957034836754 25.234611634328648 24.522288732453255 50 24.162949508532318 22.487008762290873 25.64939463424669 27.700647094930115 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 15.5 6 31.0 7 56.0 8 81.0 9 310.0 10 539.0 11 1044.5 12 1550.0 13 1962.5 14 2375.0 15 2152.0 16 1929.0 17 1943.0 18 1957.0 19 1974.5 20 1992.0 21 2563.0 22 3134.0 23 4778.5 24 6423.0 25 6700.5 26 6978.0 27 7953.5 28 8929.0 29 10312.0 30 11695.0 31 15886.5 32 20078.0 33 21428.0 34 22778.0 35 25617.5 36 28457.0 37 29492.5 38 30528.0 39 37964.5 40 45401.0 41 44988.5 42 44576.0 43 46152.0 44 47728.0 45 52011.5 46 56295.0 47 61410.0 48 66525.0 49 68705.0 50 70885.0 51 75558.0 52 80231.0 53 82101.0 54 83971.0 55 89553.5 56 95136.0 57 98738.0 58 102340.0 59 104270.0 60 106200.0 61 104599.5 62 102999.0 63 80903.0 64 58807.0 65 46934.5 66 35062.0 67 27582.5 68 20103.0 69 16298.5 70 12494.0 71 9786.0 72 7078.0 73 6610.5 74 6143.0 75 4273.5 76 2404.0 77 1713.0 78 1022.0 79 884.0 80 746.0 81 431.5 82 117.0 83 101.0 84 85.0 85 44.0 86 3.0 87 1.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1195806.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.100209601299495 #Duplication Level Percentage of deduplicated Percentage of total 1 71.55464363038868 7.9427154224360415 2 9.300586580946103 2.064769209270703 3 3.2464999482939167 1.0811048969001136 4 1.4437853425048008 0.6410527968434908 5 0.796573289791441 0.442106523974084 6 0.48556654246918585 0.32339342380717534 7 0.3943529417964263 0.30641802175805744 8 0.3299304922921066 0.29298380946418484 9 0.2905567959347826 0.29027172023622827 >10 7.789490679203867 23.819895728940384 >50 2.6519813296565613 20.249841931732963 >100 1.6607985787720831 35.23292427350532 >500 0.043884427138396735 3.2060471994062456 >1k 0.00983616470343375 2.0998504723117115 >5k 7.566280541102885E-4 0.646786196595172 >10k+ 7.566280541102885E-4 1.3598383728181314 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TTTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 16191 1.3539821676760277 No Hit TTTAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 7701 0.6440007827356611 No Hit TTTAGGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 4491 0.37556259125644126 No Hit TTTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 4426 0.3701269269429991 No Hit TTTAGGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCT 2626 0.21960083826306273 No Hit TTTAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 2137 0.17870791750501336 No Hit TTTAGGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 1901 0.15897227476697726 No Hit TTTAGGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 1546 0.12928518505510092 No Hit TTTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 1405 0.11749397477517257 No Hit TTTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 1244 0.10403025239880048 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 9.198816530440557E-4 0.0 0.0 0.0 0.0 8 0.002090640120554672 0.0 0.0 0.0 0.0 9 0.004766659474864652 0.0 0.0 0.0 0.0 10 0.02082277560072453 0.0 0.0 0.0 0.0 11 0.03161047862278664 0.0 0.0 0.0 0.0 12 0.0413946743869825 0.0 0.0 0.0 0.0 13 0.049924486078845566 0.0 0.0 0.0 0.0 14 0.058705174585175185 0.0 0.0 0.0 0.0 15 0.06748586309150481 0.0 0.0 0.0 0.0 16 0.0764338028074788 0.0 0.0 0.0 0.0 17 0.08479636328969749 0.0 0.0 0.0 0.0 18 0.0949986870780043 0.0 0.0 0.0 0.0 19 0.1064553949386439 0.0 0.0 0.0 0.0 20 0.11707584675106163 0.0 0.0 0.0 0.0 21 0.12485302799952501 0.0 0.0 0.0 0.0 22 0.13263020924798838 0.0 0.0 0.0 0.0 23 0.1408255185205627 0.0 0.0 0.0 0.0 24 0.14952258142207014 0.0 0.0 0.0 0.0 25 0.157968767509111 0.0 0.0 0.0 0.0 26 0.16775296327330688 0.0 0.0 0.0 0.0 27 0.1751956421024815 0.0 0.0 0.0 0.0 28 0.18389270500398894 0.0 0.0 0.0 0.0 29 0.19275701911514076 0.0 0.0 0.0 0.0 30 0.20170495883111475 0.0 0.0 0.0 0.0 31 0.21015114491815562 0.0 0.0 0.0 0.0 32 0.21884820781966305 0.0 0.0 0.0 0.0 33 0.22645813785848207 0.0 0.0 0.0 0.0 34 0.2339844422924789 0.0 0.0 0.0 0.0 35 0.244772145314541 0.0 0.0 0.0 0.0 36 0.2639224088188218 0.0 0.0 0.0 0.0 37 0.2768843775662608 0.0 0.0 0.0 0.0 38 0.28775570619314506 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCGT 30 2.5278023E-6 44.000004 30 GATAACG 20 7.856609E-4 44.000004 14 CCGATAA 20 7.856609E-4 44.000004 44 TTACTCG 20 7.856609E-4 44.000004 44 GCGTTAA 20 7.856609E-4 44.000004 27 CCGTATC 20 7.856609E-4 44.000004 26 CCCGTAT 60 0.0 44.000004 44 CCCCGTA 20 7.856609E-4 44.000004 39 TACGCAC 40 8.312782E-9 44.000004 40 CATACCG 20 7.856609E-4 44.000004 31 CGTACGC 40 8.312782E-9 44.000004 24 ATGCGTA 20 7.856609E-4 44.000004 38 TACTACG 20 7.856609E-4 44.000004 31 CGGTATA 20 7.856609E-4 44.000004 16 ATTGCGC 30 2.5278023E-6 44.000004 25 GCGCTTA 20 7.856609E-4 44.000004 16 CGATACT 20 7.856609E-4 44.000004 26 AATACCG 20 7.856609E-4 44.000004 40 TCGGTAT 20 7.856609E-4 44.000004 15 GTAACGT 30 2.5278023E-6 44.000004 33 >>END_MODULE