##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527298_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2840641 Sequences flagged as poor quality 0 Sequence length 52 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.35169245251336 33.0 31.0 34.0 31.0 34.0 2 32.69284784666559 34.0 31.0 34.0 31.0 34.0 3 32.99013004459205 34.0 31.0 34.0 31.0 34.0 4 35.97508766507278 37.0 35.0 37.0 35.0 37.0 5 36.35156290428815 37.0 37.0 37.0 35.0 37.0 6 36.34378226604488 37.0 37.0 37.0 35.0 37.0 7 36.52016076653122 37.0 37.0 37.0 35.0 37.0 8 36.63892586215576 37.0 37.0 37.0 35.0 37.0 9 38.644867478854245 39.0 39.0 39.0 39.0 39.0 10 38.126137727365055 39.0 39.0 39.0 37.0 39.0 11 37.85836929059322 39.0 38.0 39.0 35.0 39.0 12 37.32593171752432 39.0 37.0 39.0 35.0 39.0 13 37.137418631921456 39.0 37.0 39.0 34.0 39.0 14 37.90425611684123 40.0 37.0 40.0 34.0 40.0 15 37.974573696570594 40.0 37.0 40.0 34.0 40.0 16 37.90205872547781 40.0 37.0 40.0 34.0 40.0 17 37.874812762330755 40.0 37.0 40.0 33.0 40.0 18 37.87162932591623 40.0 37.0 40.0 33.0 40.0 19 37.727628376834666 40.0 37.0 40.0 33.0 40.0 20 37.76268349291586 40.0 37.0 40.0 33.0 40.0 21 33.59422045939631 39.0 34.0 40.0 10.0 40.0 22 34.34806510220756 39.0 34.0 40.0 17.0 40.0 23 36.371459821920475 39.0 34.0 40.0 30.0 40.0 24 37.17260118402854 39.0 35.0 40.0 32.0 40.0 25 37.438198279895275 39.0 36.0 40.0 33.0 40.0 26 37.49193157459883 40.0 36.0 40.0 33.0 40.0 27 37.483641896318474 40.0 36.0 40.0 34.0 40.0 28 37.34188058258682 40.0 35.0 40.0 33.0 40.0 29 37.34140392960603 40.0 35.0 40.0 33.0 40.0 30 37.22887580655211 40.0 35.0 40.0 33.0 40.0 31 37.08523181915631 39.0 35.0 40.0 32.0 40.0 32 36.95768490280891 39.0 35.0 40.0 32.0 40.0 33 36.634810945839334 39.0 35.0 40.0 31.0 40.0 34 36.422010032242724 39.0 35.0 40.0 30.0 40.0 35 36.4046199431748 39.0 35.0 40.0 30.0 40.0 36 36.376404128504795 39.0 35.0 40.0 31.0 40.0 37 36.32089306603685 38.0 35.0 40.0 31.0 40.0 38 36.29338413407397 38.0 35.0 40.0 31.0 40.0 39 36.137281338965394 38.0 35.0 40.0 30.0 40.0 40 31.219462790264593 37.0 30.0 40.0 8.0 40.0 41 32.12206751926766 36.0 30.0 40.0 13.0 40.0 42 33.96943541968169 36.0 31.0 40.0 23.0 40.0 43 34.8495065022296 37.0 33.0 40.0 27.0 40.0 44 35.584244894022156 38.0 34.0 40.0 30.0 40.0 45 35.85961513616117 38.0 35.0 40.0 30.0 40.0 46 35.87196375747587 38.0 35.0 40.0 31.0 40.0 47 35.82608995645701 37.0 35.0 40.0 31.0 40.0 48 35.689742209592836 37.0 35.0 40.0 30.0 40.0 49 35.5855551616695 37.0 35.0 40.0 30.0 40.0 50 35.44751519111355 37.0 35.0 40.0 30.0 40.0 51 35.29515626930682 36.0 35.0 40.0 30.0 40.0 52 34.88093391597178 36.0 34.0 40.0 29.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 3.0 14 15.0 15 17.0 16 74.0 17 185.0 18 380.0 19 743.0 20 1412.0 21 2492.0 22 4293.0 23 6665.0 24 9986.0 25 13762.0 26 19089.0 27 25105.0 28 33252.0 29 41852.0 30 54699.0 31 73933.0 32 109772.0 33 124053.0 34 237577.0 35 304992.0 36 339240.0 37 352296.0 38 719652.0 39 365098.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 99.54929186757496 0.347210365547776 0.07153315044034075 0.031964616436923915 8 99.28903370753291 0.5770176520017841 0.05350904954198718 0.08043959092331626 9 97.57199167371027 1.2994954307848123 0.4906639029711956 0.6378489925337274 10 54.540612488519315 28.1682901852082 4.893085750716124 12.398011575556362 11 35.704828593264686 21.02363515840263 19.852913479739257 23.418622768593426 12 31.993342347730668 14.559636363764374 28.614703512341055 24.8323177761639 13 26.665213942909364 18.24947256622713 26.928957231836055 28.156356259027454 14 28.838631844009853 16.0183212169366 31.141175530452458 24.001871408601087 15 33.20201320758237 16.675743256539633 27.72332019428009 22.3989233415979 16 34.47316996410317 19.39400297327258 24.105052345579747 22.027774717044498 17 33.67447699304488 19.217528719750227 21.4878965698235 25.620097717381395 18 33.538204933323144 19.09171204668242 25.742534871530758 21.627548148463674 19 33.46765747590069 21.157055749036925 23.325509981725958 22.049776793336434 20 33.83669390113006 23.245246407412974 21.43604207641867 21.482017615038295 21 38.261821891608264 19.341937259935346 23.333184305936584 19.063056542519803 22 31.782967295057702 18.41327362380533 25.576762427916798 24.22699665322017 23 32.3178113672231 20.73260929487394 23.42034773137471 23.529231606528246 24 32.80815844029569 20.307388367625475 22.3744218294392 24.51003136263963 25 28.113161782851126 18.725562293862545 21.900866740992615 31.260409182293714 26 27.695439163202952 19.03992795992172 25.36071964039102 27.9039132364843 27 26.14012119095655 18.087290861464016 24.074636675313776 31.697951272265662 28 25.80495036155572 24.66186329071502 21.827186187906182 27.70600015982308 29 32.12943839084207 21.179691485126067 21.39369247997195 25.297177644059914 30 29.834181792067355 20.35889082780964 24.406005545931357 25.40092183419165 31 34.54428067467871 18.80821969407609 22.34256282296848 24.30493680827672 32 36.105900041575126 17.958622719308774 23.63660173883289 22.29887550028321 33 36.17496895947077 18.08155271996708 23.85482713232682 21.88865118823533 34 29.118885490986013 20.91735632908206 27.615985265297518 22.347772914634408 35 26.842392262873062 27.387269281827585 25.85300289617731 19.917335559122044 36 29.8431234358724 28.002095301729433 20.946434273109485 21.208346989288685 37 31.300681782738472 27.166966892331697 19.709143112417234 21.823208212512597 38 31.743293151088082 25.943968280398682 19.54499002161836 22.76774854689487 39 30.65649619223267 23.133405453205807 19.469654912394773 26.74044344216675 40 28.509762409259036 27.564658821723686 19.18060043490184 24.744978334115434 41 24.429908601614915 24.337887117731526 20.82889038072745 30.40331389992611 42 25.057443020782987 21.52486005799395 22.570222706776395 30.84747421444667 43 26.046867590800808 19.147368498870502 24.98763483312393 29.81812907720476 44 26.77501310443664 20.398635378423393 23.136573752191847 29.689777764948122 45 27.915143096223705 20.28140831593996 22.0934641160217 29.70998447181464 46 25.613021849645907 22.215197203729723 24.59793405784117 27.573846888783198 47 27.569692896779287 20.18160689787974 25.44239134758669 26.806308857754292 48 27.894549152814452 20.283872548484656 26.120512940565177 25.701065358135715 49 29.503376174602845 19.543863515312214 24.5867746047459 26.36598570533904 50 25.918058635357298 20.314534642005096 25.27862549333055 28.488781229307047 51 24.421847040861554 21.773993968262797 26.24087309871258 27.56328589216307 52 25.090146906983318 21.020748485993128 25.669628791529796 28.219475815493755 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 4.0 6 8.0 7 6.5 8 5.0 9 39.5 10 74.0 11 262.5 12 451.0 13 775.0 14 1691.5 15 2284.0 16 2503.0 17 2722.0 18 3083.0 19 3444.0 20 3691.0 21 3938.0 22 4156.5 23 4375.0 24 3939.5 25 3504.0 26 5445.5 27 7387.0 28 8962.5 29 10538.0 30 11188.0 31 11838.0 32 14508.5 33 17179.0 34 19374.5 35 21570.0 36 24499.0 37 27428.0 38 33890.0 39 38088.5 40 35825.0 41 45093.5 42 54362.0 43 55961.5 44 57561.0 45 68065.0 46 78569.0 47 85708.5 48 92848.0 49 107095.0 50 121342.0 51 122103.5 52 122865.0 53 133507.5 54 144150.0 55 174077.5 56 204005.0 57 234879.5 58 265754.0 59 285551.5 60 305349.0 61 293980.5 62 282612.0 63 296865.5 64 263209.5 65 215300.0 66 177465.5 67 139631.0 68 113059.5 69 86488.0 70 73555.5 71 60623.0 72 52623.5 73 44624.0 74 38745.0 75 32866.0 76 24598.5 77 16331.0 78 11167.0 79 6003.0 80 4660.5 81 3318.0 82 1952.5 83 587.0 84 403.5 85 220.0 86 134.5 87 49.0 88 36.0 89 16.0 90 9.0 91 9.5 92 10.0 93 6.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2840641.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.410394370926713 #Duplication Level Percentage of deduplicated Percentage of total 1 70.04884252319499 5.891383908470109 2 10.283602744998122 1.7297830927875741 3 4.397262093130214 1.1094812506665532 4 2.2164354890713907 0.7456438624323287 5 1.2698776325370271 0.5340085846227577 6 0.8106203857376383 0.4090582277499764 7 0.5045296784222043 0.29703054971573 8 0.35415708077518104 0.2382880574860336 9 0.28416302404093446 0.21509307880374487 >10 4.018398305913119 9.117925878047766 >50 2.910937186689794 17.825396367231193 >100 2.707371731876814 40.07186382830826 >500 0.1352221366263753 7.765511485873178 >1k 0.051257488612885954 7.714642194016855 >5k 0.004881665582179614 2.7611063330343875 >10k+ 0.002440832791089807 3.5737833007535693 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AGGACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 30076 1.0587751144900044 No Hit AGGACTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 18150 0.6389402955178074 No Hit AGGACTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 14444 0.5084767839371466 No Hit AGGACTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 12330 0.43405696108730385 No Hit AGGACTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTAGGACTGGGAAG 12045 0.4240240142981813 No Hit AGGACTGGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGTGCTCT 9081 0.3196813676913063 No Hit AGGACTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT 8364 0.2944405857691979 No Hit AGGACTGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTC 8112 0.2855693486082895 No Hit AGGACTGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 7171 0.2524430225431514 No Hit AGGACTGGGACTTCTGATTCTGACAGACTCAGGAAGAAACCATGGTGCTCTC 6765 0.23815047378391005 No Hit AGGACTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 5992 0.2109383058260442 No Hit AGGACTGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCT 5555 0.1955544540827229 No Hit AGGACTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGG 5479 0.19287900160562352 No Hit AGGACTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 5428 0.19108363218020158 No Hit AGGACTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 5304 0.18671842024388158 No Hit AGGACTGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAACCCCAGAA 4698 0.1653852070712209 No Hit AGGACTGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 4330 0.15243038455052926 No Hit AGGACTGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCT 4165 0.14662183640945828 No Hit AGGACTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT 4129 0.1453545168150428 No Hit AGGACTGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCT 3909 0.1376097859602815 No Hit AGGACTGGGGACATTTGCTTCTGACATAGTTGTGTTGACTCACAACCCCAGA 3633 0.1278936690697628 No Hit AGGACTGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAG 3590 0.1263799262208776 No Hit AGGACTGGGCATATATCTCCTAACCTTTGACGACTCTGTATTTCATTTTTGA 3501 0.12324683055690598 No Hit AGGACTGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGA 3307 0.1164173860758892 No Hit AGGACTGGGGGGGCTGGAGAGTTGGCTCAGCAGTTAGGAACACTGACTGCTC 3269 0.11507965983733953 No Hit AGGACTGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGCTG 3201 0.11268583393677695 No Hit AGGACTGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC 3086 0.10863745189906081 No Hit AGGACTGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGA 2991 0.10529313630268662 No Hit AGGACTGGGGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTC 2888 0.10166719412977564 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 4.2243986480516193E-4 0.0 0.0 0.0 0.0 8 8.096764075432271E-4 0.0 0.0 0.0 0.0 9 0.0013025229164825827 0.0 0.0 0.0 0.0 10 0.010807419874598725 0.0 0.0 0.0 0.0 11 0.01865776069556132 0.0 0.0 0.0 0.0 12 0.025804035075181975 0.0 0.0 0.0 0.0 13 0.033936002472681345 0.0 0.0 0.0 0.0 14 0.048862211029130395 0.0 0.0 0.0 0.0 15 0.05692377178249557 0.0 0.0 0.0 0.0 16 0.06470370595932397 0.0 0.0 0.0 0.0 17 0.06924493450597946 0.0 0.0 0.0 0.0 18 0.07396217966297043 0.0 0.0 0.0 0.0 19 0.07959471119370592 0.0 0.0 0.0 3.520332206709683E-5 20 0.08624813906438723 0.0 0.0 0.0 3.520332206709683E-5 21 0.09177506062892143 0.0 0.0 0.0 3.520332206709683E-5 22 0.09726677887138853 0.0 0.0 0.0 3.520332206709683E-5 23 0.10557476287922339 0.0 0.0 0.0 3.520332206709683E-5 24 0.11338990037811889 0.0 0.0 0.0 3.520332206709683E-5 25 0.11969129502812921 0.0 0.0 0.0 3.520332206709683E-5 26 0.128703345477306 0.0 0.0 0.0 3.520332206709683E-5 27 0.13613124643346344 0.0 0.0 0.0 3.520332206709683E-5 28 0.1709473319578222 0.0 0.0 0.0 3.520332206709683E-5 29 0.18013539901733447 0.0 0.0 0.0 3.520332206709683E-5 30 0.19333664479249577 0.0 0.0 0.0 3.520332206709683E-5 31 0.20037730920591515 0.0 0.0 0.0 3.520332206709683E-5 32 0.20773480351793838 0.0 0.0 0.0 3.520332206709683E-5 33 0.21248725199699645 0.0 0.0 0.0 3.520332206709683E-5 34 0.2219921489551126 0.0 0.0 0.0 3.520332206709683E-5 35 0.2607862098730533 0.0 0.0 0.0 3.520332206709683E-5 36 0.2740578622923488 0.0 0.0 0.0 3.520332206709683E-5 37 0.2830699127415256 0.0 0.0 0.0 3.520332206709683E-5 38 0.2907442369521527 0.0 0.0 0.0 3.520332206709683E-5 39 0.2978553080097063 0.0 0.0 0.0 3.520332206709683E-5 40 0.3075362215781579 0.0 0.0 0.0 3.520332206709683E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATTGCG 45 3.110472E-10 46.0 22 TCGTACG 20 6.313032E-4 46.0 15 TTACGAC 40 5.6170393E-9 46.0 38 TAATGCG 25 3.4184355E-5 46.0 40 ACTGGGC 35760 0.0 43.07998 4 AGGACTG 309365 0.0 42.041084 1 CTGGGAC 15140 0.0 41.97424 5 GACTGGG 300875 0.0 41.966064 3 CTGGGGG 66895 0.0 41.887882 5 ACTGGGA 85625 0.0 41.74517 4 GGACTGG 309600 0.0 41.740242 2 ACTGGGG 166120 0.0 41.562546 4 CTGGGAT 23125 0.0 41.54422 5 TGGGATA 2610 0.0 41.417625 6 TGGGGGG 38130 0.0 41.31314 6 TGGGCGA 2330 0.0 40.66953 6 ACTGGGT 14950 0.0 40.615383 4 TGGGGGC 15040 0.0 40.494682 6 TGGGATT 8675 0.0 40.352737 6 TGGGACA 4035 0.0 40.299877 6 >>END_MODULE