##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527297_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 451679 Sequences flagged as poor quality 0 Sequence length 50 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.29349161683408 31.0 31.0 33.0 28.0 33.0 2 31.458378627299474 31.0 31.0 34.0 28.0 34.0 3 32.3458318850334 34.0 31.0 34.0 30.0 34.0 4 36.10521631512645 37.0 35.0 37.0 35.0 37.0 5 36.07747316124947 37.0 35.0 37.0 35.0 37.0 6 33.43005762942266 35.0 33.0 35.0 30.0 36.0 7 35.334396772929445 35.0 35.0 36.0 35.0 37.0 8 36.334343637849 37.0 35.0 37.0 35.0 37.0 9 38.49192014682994 39.0 39.0 39.0 37.0 39.0 10 37.599164450860016 39.0 37.0 39.0 35.0 39.0 11 37.544621290783944 39.0 37.0 39.0 35.0 39.0 12 37.24746778132258 39.0 37.0 39.0 34.0 39.0 13 36.91935423165567 39.0 37.0 39.0 33.0 39.0 14 37.96398769922888 40.0 38.0 40.0 33.0 40.0 15 37.95509421513951 40.0 38.0 40.0 33.0 40.0 16 37.29056475948627 40.0 37.0 40.0 32.0 40.0 17 37.827251211590536 40.0 38.0 40.0 33.0 40.0 18 37.945421416536966 40.0 38.0 40.0 33.0 40.0 19 37.22132532174398 40.0 37.0 40.0 32.0 40.0 20 37.61867830915318 40.0 37.0 40.0 32.0 40.0 21 37.88533892432458 40.0 38.0 40.0 33.0 40.0 22 37.77936986222517 40.0 38.0 40.0 33.0 40.0 23 37.84560495396067 40.0 38.0 40.0 33.0 40.0 24 37.59809732132776 39.0 37.0 40.0 33.0 40.0 25 36.55271996262832 37.0 36.0 40.0 32.0 40.0 26 35.666451174395974 37.0 35.0 39.0 31.0 40.0 27 35.21407016930165 35.0 35.0 39.0 30.0 40.0 28 35.05108273796214 35.0 35.0 39.0 30.0 40.0 29 35.03054160144705 35.0 35.0 40.0 30.0 40.0 30 34.50052581590023 35.0 35.0 39.0 26.0 40.0 31 34.216273061178406 35.0 35.0 39.0 25.0 40.0 32 32.6231416559105 35.0 33.0 38.0 16.0 40.0 33 32.710354034613076 35.0 33.0 38.0 18.0 40.0 34 32.324216977100996 35.0 33.0 39.0 16.0 40.0 35 32.52090311925062 35.0 33.0 39.0 17.0 40.0 36 31.786534242238403 35.0 31.0 38.0 12.0 40.0 37 30.74064988631307 35.0 27.0 38.0 10.0 40.0 38 30.223424157421533 35.0 25.0 38.0 9.0 40.0 39 29.727921820584974 35.0 24.0 38.0 9.0 40.0 40 29.10717345725615 35.0 20.0 38.0 8.0 40.0 41 28.640917554280804 35.0 18.0 37.0 8.0 40.0 42 28.26692407661193 35.0 17.0 37.0 8.0 40.0 43 28.257824694085844 35.0 17.0 36.0 8.0 40.0 44 27.86227829941175 35.0 15.0 35.0 8.0 40.0 45 27.43148342074792 35.0 15.0 35.0 8.0 40.0 46 26.952612364090427 34.0 14.0 35.0 8.0 40.0 47 26.906236508670982 34.0 13.0 35.0 8.0 39.0 48 26.92201319963957 34.0 13.0 35.0 8.0 39.0 49 26.688781191952692 34.0 12.0 35.0 8.0 39.0 50 26.047011262423094 33.0 10.0 35.0 8.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 5.0 15 10.0 16 42.0 17 113.0 18 249.0 19 450.0 20 943.0 21 1610.0 22 2583.0 23 3924.0 24 6043.0 25 9052.0 26 12812.0 27 18064.0 28 24322.0 29 28140.0 30 26416.0 31 21090.0 32 19091.0 33 19708.0 34 25815.0 35 36128.0 36 98279.0 37 48840.0 38 44311.0 39 3638.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 0.0 100.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.46887059172555 0.21873941449569273 0.12575302371817154 0.18663697006059612 8 98.18654398366982 0.9767998955010084 0.3688460167508341 0.46781010407833884 9 94.9284779677603 3.0213935117638853 0.6772508794962795 1.3728776409795453 10 34.10320160999294 46.860048839994775 10.89756220678845 8.139187343223838 11 17.89058158559508 65.64462815406516 9.286905080820672 7.177885179519084 12 34.39500176009954 52.54970897473649 6.460118801184027 6.595170463979951 13 14.597534975059723 54.885438552600405 7.779418569382238 22.73760790295763 14 15.368215037670558 71.52601737074338 6.49997011151725 6.60579748006881 15 28.21893424312399 56.026957197478744 7.555365646842116 8.198742912555156 16 13.532840800657103 57.26611155267347 23.552788595440568 5.648259051228859 17 30.000952003524628 55.300113576234445 7.078256903686025 7.620677516554898 18 25.72069987756792 56.690260118358395 9.158716699248803 8.430323304824887 19 13.936224619696732 56.28709769548729 22.200500798133188 7.576176886682799 20 11.043240885673232 67.53513003703958 9.70180150062323 11.719827576663958 21 11.00427516001408 56.09913234841558 23.61389393795151 9.282698553618832 22 10.698305655122333 57.997825889625155 7.358765849198214 23.9451026060543 23 10.351599255223288 73.87702328423504 7.239433314367062 8.531944146174606 24 11.145083123191469 72.30356071457827 8.51268267951355 8.038673482716709 25 11.65938642265857 60.08382058940088 8.603012316268854 19.653780671671697 26 27.133650225049205 57.81982337013676 8.633564987524325 6.412961417289713 27 14.965716803305002 57.7684594590406 9.615456994901246 17.65036674275315 28 18.450935288113904 68.28743421766343 7.284598132744715 5.977032361477952 29 29.87652735681756 55.946147595969705 8.050407479648158 6.1269175675645755 30 18.711297182290963 67.36310521410115 8.127010553955353 5.798587049652518 31 28.826666725705646 56.133448754535856 9.282477157450312 5.7574073623081885 32 16.95961069697728 56.54635260882175 19.357552598194737 7.136484096006235 33 25.9219489947507 57.59178531656332 8.09247275166656 8.393792937019432 34 14.773766325199977 59.156170643310844 9.204324309963493 16.865738721525688 35 13.78921756380084 70.37210054042805 8.662125093263136 7.176556802507976 36 23.998016290330078 59.15838460499603 9.47221367387016 7.371385430803734 37 15.240690844604243 59.019126414998254 17.42277148151674 8.317411258880753 38 25.236506457019253 56.763542250137824 9.079014078582356 8.92093721426057 39 16.621095955313397 54.989716147972345 9.645566873819682 18.743621022894576 40 17.68534733737898 53.70561837056847 19.15608208484344 9.452952207209101 41 17.924233803209802 53.66798102192043 10.300235344127135 18.107549830742627 42 18.018105778661393 62.35822342858535 10.212562461394043 9.411108331359218 43 17.547417524392323 63.83648564577942 9.704015462308409 8.912081367519855 44 17.85316563311555 63.70984703738717 10.110498827707287 8.326488501789989 45 25.188463488450868 56.016551577558396 9.597745301419813 9.19723963257092 46 18.358613085841938 55.70216901826297 16.642571383659636 9.29664651223546 47 24.867439044099903 54.9186479778781 10.020390587120499 10.193522390901503 48 25.354067822502262 55.1500069739793 9.947108455341072 9.548816748177357 49 25.406981506778042 54.80684291277655 9.651323174201147 10.134852406244258 50 17.804015683704577 61.27869571089203 10.745905831353683 10.171382774049713 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 6.0 4 12.0 5 227.0 6 442.0 7 1105.5 8 1769.0 9 31683.0 10 61597.0 11 46881.5 12 32166.0 13 22366.0 14 12566.0 15 9322.5 16 6079.0 17 6086.0 18 6093.0 19 6329.0 20 6565.0 21 7499.0 22 8433.0 23 9978.5 24 11524.0 25 13117.0 26 14710.0 27 14989.0 28 15268.0 29 15230.5 30 15193.0 31 16194.5 32 17196.0 33 17054.5 34 16913.0 35 15944.0 36 14975.0 37 14874.5 38 14774.0 39 13518.5 40 12263.0 41 11045.0 42 9827.0 43 10015.5 44 10204.0 45 11128.0 46 12052.0 47 11206.0 48 10360.0 49 12576.0 50 14792.0 51 29644.0 52 44496.0 53 40530.5 54 36565.0 55 29584.5 56 22604.0 57 17201.5 58 11799.0 59 8592.5 60 5386.0 61 3829.5 62 2273.0 63 1570.5 64 868.0 65 779.0 66 690.0 67 559.5 68 429.0 69 371.5 70 314.0 71 261.5 72 209.0 73 194.0 74 179.0 75 117.0 76 55.0 77 38.5 78 22.0 79 14.5 80 7.0 81 6.5 82 6.0 83 4.0 84 2.0 85 1.5 86 1.0 87 0.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 451679.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.73932496788899 #Duplication Level Percentage of deduplicated Percentage of total 1 81.20526969884232 26.586057137754675 2 8.418340572123132 5.512215753622074 3 3.2184572185887275 3.1611035032387345 4 1.7724583334605537 2.321163574848321 5 1.1278584047824856 1.8462661415969337 6 0.7486512555305779 1.4706202045460213 7 0.5549545149944987 1.271818534616148 8 0.3919328949348858 1.0265294730302976 9 0.33093285658706495 0.975106650092015 >10 1.860789147823183 11.373690855723517 >50 0.17721664709747084 4.132078686381506 >100 0.1668328591816034 11.001954132936804 >500 0.015921808137663394 3.7993729211550877 >1k 0.00761477780496945 4.919195254931471 >5k 0.0 0.0 >10k+ 0.002769010110897982 20.602827175526393 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CAAAGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 43371 9.602173224790171 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCAAAGTGGGA 16477 3.6479446686695645 No Hit CAAAGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 15995 3.541231715443933 No Hit CAAAGTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 15063 3.3348904863852424 No Hit CAAAGTGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4155 0.9199010801919061 No Hit CAAAGTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3584 0.7934838679681808 No Hit CAAAGTGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2848 0.6305362879390009 No Hit CAAAGTGGGGAGTGCAGTGCTCAAAGTGGGAAAAAAAAAAAAAAAAAAAA 1810 0.40072706501741284 No Hit CAAAGTGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 1694 0.3750451094693355 Illumina Single End Adapter 2 (97% over 34bp) CAAAGTGGGGTGCAGTGCTCAAAGTGGGAAAAAAAAAAAAAAAAAAAAAA 1465 0.32434538687873465 No Hit CAAAGTGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 1422 0.3148253516324646 Illumina Single End Adapter 2 (97% over 34bp) CAAAGTGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1318 0.29180015010660226 No Hit CAAAGTGGGAGTGCAGTGCTCAAAGTGGGAAAAAAAAAAAAAAAAAAAAA 1240 0.27453124896220543 No Hit CAAAGTGGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1097 0.24287159686414467 No Hit CAAAGTGGGGCAGAGTGCAGTGCTCAAAGTGGGAAAAAAAAAAAAAAAAA 1072 0.23733669265119695 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCAAAGAGGGA 998 0.22095337618087182 No Hit CAAAGTGGGCAGAGTGCAGTGCTCAAAGTGGGAAAAAAAAAAAAAAAAAA 962 0.21298311411422716 No Hit CAAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 954 0.2112119447660839 No Hit CAAAGTGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 943 0.2087765869123869 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCAAAGTGGGG 897 0.19859236316056317 No Hit CAAAGTGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 822 0.18198765052172008 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCG 807 0.17866670799395146 Illumina Single End Adapter 2 (100% over 23bp) CAAAGTGGGGAGTGCAGTGCTCAAAGTGGGGAAAAAAAAAAAAAAAAAAA 791 0.17512436929766492 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTCGAGATCGGAAGAGCTCG 790 0.17490297312914704 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCAAAGGGGGG 718 0.15896244899585768 No Hit CAAAGTGGGGTGCAGTGCTCAAAGTGGGTAAAAAAAAAAAAAAAAAAAAA 713 0.15785546815326815 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCAAAGCGGGA 703 0.15564150646808905 No Hit CAAAGTGGGGAGTGCAGTGCTCAAAGTGGGGAGTGCAGTGCTCAAAGTGG 701 0.15519871413105324 No Hit CAAAGTGGGAGAGTGCAGTGCTCAAAGTGGGAGAGTGCAGTGCTCAAAGT 698 0.15453452562549955 No Hit CAAAGTGGGAAGCAGTGGTATCAACGCAGGATCGGAAGAGCTCGTATGCC 691 0.15298475244587417 Illumina Single End Adapter 2 (95% over 22bp) CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTCGATCGGAAGAGCTCGTA 671 0.148556829075516 No Hit CAAAGTGGGGAGTGCAGTGCTCAAAGTGGGTAAAAAAAAAAAAAAAAAAA 623 0.13792981298665644 No Hit CAAAGTGGGGTGCAGTGCTCAAAGTGGGGAAAAAAAAAAAAAAAAAAAAA 584 0.12929536241445805 No Hit CAAAGTGGGGCAGAGTGCAGTGCTCAAAGTGGGGAAAAAAAAAAAAAAAA 576 0.1275241930663148 No Hit CAAAGTGGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 551 0.12198928885336711 No Hit CAAAGTGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 541 0.11977532716818803 Illumina Single End Adapter 2 (100% over 34bp) CAAAGTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 525 0.1162329884719015 No Hit CAAAGTGGGAGAGTGCAGTGCTCAAAGTGGGAAAAAAAAAAAAAAAAAAA 505 0.11180506510154337 No Hit CAAAGTGGGGTGCAGTGCTCAAAGTGGGCAAAAAAAAAAAAAAAAAAAAA 471 0.1042775953719345 No Hit CAAAGTGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 461 0.10206363368675542 Illumina Single End Adapter 2 (97% over 34bp) CAAAGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCG 461 0.10206363368675542 No Hit CAAAGTGGGGCAGAGTGCAGTGCTCAAAGTGGGTAAAAAAAAAAAAAAAA 460 0.10184223751823751 No Hit CAAAGTGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 453 0.10029246433861216 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.005313508044429783 0.0 0.0 0.0 0.0 8 0.03276663294065033 0.0 0.0 0.0 0.0 9 0.05047832642208294 0.0 0.0 0.0 0.0 10 0.29755645048806784 0.0 0.0 0.0 0.0 11 0.5661100029002898 0.0 0.0 0.0 0.0 12 0.779093117014517 0.0 0.0 0.0 0.0 13 0.9001968211938124 0.0 0.0 0.0 0.0 14 1.0582736855155985 0.0 0.0 0.0 0.0 15 1.1767206356726791 0.0 0.0 0.0 0.0 16 1.294503397324206 0.0 0.0 0.0 0.0 17 1.3843902417424765 0.0 0.0 0.0 0.0 18 1.4857896869236782 0.0 0.0 0.0 0.0 19 1.6031296562381692 0.0 0.0 0.0 0.0 20 1.7127207596545335 0.0 0.0 0.0 0.0 21 1.8185481282060934 0.0 0.0 0.0 0.0 22 1.9445225480927828 0.0 0.0 0.0 0.0 23 2.092193792494227 0.0 0.0 0.0 0.0 24 2.2546985801863713 0.0 0.0 0.0 0.0 25 2.4030340130933694 0.0 0.0 0.0 0.0 26 2.5712951011669793 0.0 0.0 0.0 0.0 27 2.737120831386892 0.0 0.0 0.0 0.0 28 3.0789565155785414 0.0 0.0 0.0 0.0 29 3.21666493239668 0.0 0.0 0.0 0.0 30 3.38913254767213 0.0 0.0 0.0 0.0 31 3.4880966349996347 0.0 0.0 0.0 0.0 32 3.585732345316032 0.0 0.0 0.0 0.0 33 3.6758405859028205 0.0 0.0 0.0 0.0 34 3.792073574374722 0.0 0.0 0.0 0.0 35 4.2373012692642344 0.0 0.0 0.0 0.0 36 4.330287660041756 0.0 0.0 0.0 0.0 37 4.407554922854505 0.0 0.0 0.0 0.0 38 4.487700335857988 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGAAC 20 7.8514E-4 44.000004 39 CGTTCAT 20 7.8514E-4 44.000004 33 CGACAAT 40 8.292773E-9 44.000004 30 GGGTCGC 40 8.292773E-9 44.000004 7 GGCACCG 20 7.8514E-4 44.000004 37 ATAAGTC 40 8.292773E-9 44.000004 22 AGGATTA 20 7.8514E-4 44.000004 42 TTCAAGC 40 8.292773E-9 44.000004 10 GTCGCGA 40 8.292773E-9 44.000004 9 TAAGTCC 40 8.292773E-9 44.000004 23 TCGGCGG 20 7.8514E-4 44.000004 24 GAAGCAC 20 7.8514E-4 44.000004 9 CCGCCAG 20 7.8514E-4 44.000004 18 TTATTGC 40 8.292773E-9 44.000004 30 TCGAACT 40 8.292773E-9 44.000004 40 TCGCGAA 40 8.292773E-9 44.000004 10 CGAAGTT 40 8.292773E-9 44.000004 13 CGCCAGC 20 7.8514E-4 44.000004 19 GCGAAGT 40 8.292773E-9 44.000004 12 ACCGCCA 20 7.8514E-4 44.000004 40 >>END_MODULE