##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527280_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1061161 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20616287255186 33.0 31.0 34.0 31.0 34.0 2 32.58412625416878 34.0 31.0 34.0 31.0 34.0 3 32.71159795733164 34.0 31.0 34.0 31.0 34.0 4 36.32940901522012 37.0 37.0 37.0 35.0 37.0 5 36.35245452857766 37.0 37.0 37.0 35.0 37.0 6 35.3148297006769 37.0 35.0 37.0 33.0 37.0 7 36.29274916812812 37.0 35.0 37.0 35.0 37.0 8 36.58573863909435 37.0 37.0 37.0 35.0 37.0 9 38.603985634602104 39.0 39.0 39.0 38.0 39.0 10 37.93211020759338 39.0 38.0 39.0 35.0 39.0 11 37.48199189378426 39.0 37.0 39.0 35.0 39.0 12 36.917840930829534 39.0 35.0 39.0 33.0 39.0 13 36.80156357046668 39.0 35.0 39.0 33.0 39.0 14 37.52520776771856 40.0 37.0 40.0 33.0 40.0 15 37.63015131539889 40.0 37.0 40.0 33.0 40.0 16 37.754637609184655 40.0 37.0 40.0 33.0 40.0 17 37.684009306787566 40.0 37.0 40.0 33.0 40.0 18 37.67482031473075 40.0 37.0 40.0 33.0 40.0 19 37.64973646788753 40.0 37.0 40.0 33.0 40.0 20 37.612083369064635 40.0 37.0 40.0 33.0 40.0 21 33.338578217631444 39.0 33.0 40.0 10.0 40.0 22 34.01423063983693 39.0 33.0 40.0 16.0 40.0 23 36.090548936495026 39.0 34.0 40.0 30.0 40.0 24 36.88959733725608 39.0 35.0 40.0 32.0 40.0 25 37.19167685205167 39.0 35.0 40.0 33.0 40.0 26 37.26310427918101 39.0 35.0 40.0 33.0 40.0 27 37.2129224500335 39.0 35.0 40.0 33.0 40.0 28 37.1179877511518 39.0 35.0 40.0 33.0 40.0 29 37.162233629015766 39.0 35.0 40.0 33.0 40.0 30 37.040056127204075 39.0 35.0 40.0 32.0 40.0 31 36.87602540990481 39.0 35.0 40.0 32.0 40.0 32 36.83887270640365 39.0 35.0 40.0 32.0 40.0 33 36.54986566600167 39.0 35.0 40.0 31.0 40.0 34 36.344808186505155 38.0 35.0 40.0 30.0 40.0 35 36.194902564266876 38.0 35.0 40.0 30.0 40.0 36 36.09409882195067 38.0 35.0 40.0 30.0 40.0 37 36.220572561562285 38.0 35.0 40.0 31.0 40.0 38 36.10865551975619 38.0 35.0 40.0 30.0 40.0 39 35.95018003865577 38.0 35.0 40.0 30.0 40.0 40 31.21836554490789 36.0 30.0 40.0 9.0 40.0 41 32.05017334787087 36.0 30.0 40.0 13.0 40.0 42 33.776416585230706 36.0 30.0 40.0 23.0 40.0 43 34.698570716413435 36.0 33.0 40.0 27.0 40.0 44 35.545340433732484 37.0 34.0 40.0 30.0 40.0 45 35.83771454096033 38.0 35.0 40.0 30.0 40.0 46 35.88331365363032 38.0 35.0 40.0 31.0 40.0 47 35.84246594060656 38.0 35.0 40.0 31.0 40.0 48 35.710157082667 37.0 35.0 40.0 30.0 40.0 49 35.59151721557803 37.0 35.0 40.0 30.0 40.0 50 35.48212382475421 37.0 34.0 40.0 30.0 40.0 51 35.31756632593923 37.0 34.0 40.0 29.0 40.0 52 34.956576805970066 36.0 34.0 40.0 29.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 2.0 15 10.0 16 22.0 17 72.0 18 153.0 19 333.0 20 588.0 21 1018.0 22 1586.0 23 2416.0 24 3641.0 25 5107.0 26 7313.0 27 9875.0 28 13542.0 29 17956.0 30 23489.0 31 32061.0 32 43457.0 33 51976.0 34 95561.0 35 109043.0 36 126670.0 37 133620.0 38 277536.0 39 104112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 0.0 100.0 3 0.0 100.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 99.55303672110075 0.35159603490893465 0.03778879924912431 0.05757844474118442 8 99.34590509828386 0.5183002390777648 0.08198567418139188 0.05380898845698249 9 98.01679481247426 1.344282347353512 0.33651820977212693 0.3024046304000995 10 59.32521078328359 31.845780235044447 3.2815001682119864 5.547508813459975 11 35.774307574439696 24.841470804147534 22.54606039988277 16.838161221530004 12 31.775008693308553 16.75523318327756 28.26357169176025 23.206186431653634 13 27.43975702084792 16.34210077452903 30.54399850729531 25.67414369732774 14 24.645930259404558 20.54900246051259 32.00635907275145 22.7987082073314 15 25.630889186466522 21.086338453825572 31.475713864342925 21.80705849536498 16 30.134258609202565 21.330316511820545 26.933801751100916 21.60162312787598 17 30.627491963990384 21.40155923559196 24.910828799776848 23.060120000640808 18 27.96418262638751 21.548191085047417 27.220563137921577 23.267063150643494 19 28.51235580651758 22.292658701177295 26.403533488320814 22.79145200398432 20 27.800493987246043 23.20279392099785 26.59671812288616 22.399993968869943 21 32.48065090971116 21.30072627998956 26.42784648135391 19.790776328945373 22 26.54743248197022 21.296485641669832 28.67067297045406 23.485408905905892 23 27.576682520371556 21.69124195103288 28.503120638621283 22.228954889974283 24 27.102013737783427 22.42751099974462 27.102673392633164 23.36780186983879 25 28.09960034339747 23.995133631937097 23.346504441833048 24.55876158283239 26 26.165209614752143 22.980301763822833 25.783363693162485 25.071124928262535 27 23.89373525789206 22.172413045711252 26.115358555393577 27.81849314100311 28 24.40100983733854 24.1277242567339 25.35072434814321 26.12054155778435 29 27.253922826036764 22.837816316279998 25.14217917921974 24.766081678463493 30 27.950424110950177 21.337478478760527 26.255299619944573 24.456797790344726 31 27.320924911488454 23.458080347845424 25.497073488377353 23.723921252288765 32 29.262571843480867 22.24459813355372 25.429317511668824 23.063512511296587 33 31.13797058127843 21.67390245212555 25.808053631824013 21.38007333477201 34 27.69193364626103 23.071428369493415 27.878710205143236 21.357927779102322 35 25.088275954355655 25.356943951012145 28.906075515402467 20.64870457922973 36 25.011002100529517 26.82599530137274 26.89544753340916 21.26755506468858 37 27.320453729452932 25.995866791184376 24.663835176754517 22.01984430260818 38 26.05127779856214 25.97334428988627 25.716832789746324 22.258545121805266 39 26.87716567043078 25.401706244387046 25.81220003373663 21.90892805144554 40 27.111720087715245 29.062131005568432 22.577158414227437 21.248990492488886 41 24.488178513910707 25.39624053277495 25.357320896640566 24.758260056673777 42 24.321097364113456 24.614455299431473 25.03277071057078 26.03167662588429 43 23.134001343811164 23.774431966497072 26.561190997407557 26.53037569228421 44 23.8962796408839 22.934785579191093 26.36338877889406 26.805546001030944 45 24.991118218630348 23.213348398593617 26.315045502049173 25.480487880726866 46 25.193443784684888 25.37984339793867 24.801608803942095 24.625104013434342 47 23.852271238765844 25.511114713036005 25.84160179275341 24.795012255444743 48 24.690692552779456 24.41081042367746 25.787604331482218 25.110892692060865 49 25.709576586399237 23.567206107273073 25.98559502280992 24.73762228351777 50 24.51060677880171 24.261822664044384 27.13179244242862 24.095778114725285 51 23.41001978022185 24.887458170814796 27.481786458416774 24.220735590546578 52 22.667154183012755 25.089124082019598 27.707953835468885 24.535767899498754 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0 10 2.0 11 36.5 12 71.0 13 199.5 14 850.0 15 1372.0 16 2141.0 17 2910.0 18 3045.5 19 3181.0 20 2880.0 21 2579.0 22 3044.5 23 3510.0 24 4222.5 25 4935.0 26 5049.0 27 5163.0 28 5720.0 29 6277.0 30 7324.0 31 8371.0 32 9738.5 33 11106.0 34 13225.0 35 15344.0 36 17355.5 37 19367.0 38 21588.5 39 24924.5 40 26039.0 41 30598.5 42 35158.0 43 36902.5 44 38647.0 45 38992.5 46 39338.0 47 42897.0 48 46456.0 49 47981.5 50 49507.0 51 49219.0 52 48931.0 53 53049.0 54 57167.0 55 58563.5 56 59960.0 57 64508.0 58 69056.0 59 76229.0 60 83402.0 61 86413.0 62 89424.0 63 82963.0 64 73626.5 65 70751.0 66 64945.0 67 59139.0 68 47339.5 69 35540.0 70 27883.0 71 20226.0 72 19171.5 73 18117.0 74 15316.5 75 12516.0 76 11050.5 77 9585.0 78 6840.5 79 4096.0 80 3247.0 81 2398.0 82 1501.5 83 605.0 84 420.0 85 235.0 86 122.0 87 9.0 88 15.5 89 12.5 90 3.0 91 3.5 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1061161.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.362697706912625 #Duplication Level Percentage of deduplicated Percentage of total 1 66.27271226151066 8.193095079062584 2 11.056776857336745 2.7338317980008315 3 5.343230993652288 1.9817024865818882 4 3.0685432943049866 1.5174189259226551 5 1.8665951751576588 1.1538075945827884 6 1.2857542419228523 0.9537234610963696 7 0.8805008471651771 0.7619756062928491 8 0.7039982567452016 0.6962654107467511 9 0.49565536983737796 0.5514873753696734 >10 4.964468798924541 15.364668991495073 >50 2.264339594039369 20.013712901998336 >100 1.725591188689854 37.11274323528332 >500 0.05507205921350597 4.541394943127118 >1k 0.0159629157140597 3.787735528122122 >5k 7.981457857029851E-4 0.6364366623176515 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCAGGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 6450 0.6078248258275606 No Hit GCAGGAGGGATCAAGCAAGAGTACAATATGAAGATTCTTTTCTTGGCCCTTT 4088 0.3852384322454368 No Hit GCAGGAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 3730 0.3515017985018296 No Hit GCAGGAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 3642 0.3432089946765854 No Hit GCAGGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 3461 0.3261522049905716 No Hit GCAGGAGGATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCCTTT 2406 0.22673279549474584 No Hit GCAGGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT 2361 0.22249215717501866 No Hit GCAGGAGGGGGTTAGGCTGGCCAGTACTTCTGGGTCTTGAGAACTGAGCCAA 2164 0.20392758497532418 No Hit GCAGGAGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTC 1632 0.1537938163954386 No Hit GCAGGAGGGGCTCTTTGGCCTCGCCGGTAGAAGCAAGATGACGAAGGGAACG 1587 0.14955317807571142 No Hit GCAGGAGGGATTTCAGGGATCCTTAATATTTTGATTTGTTTTCCGAGATTGG 1438 0.13551195341705924 No Hit GCAGGAGGGACTTGTGAAACTCCGAGACGTGCCGTGGTCTCAGCAATGCACC 1348 0.1270306767776049 No Hit GCAGGAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 1316 0.12401511175024336 No Hit GCAGGAGGGATTCTCCTCCACCTCTGACATGCCCAGATATTTCTCTAGATCT 1238 0.1166646719960496 No Hit GCAGGAGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCATGAAG 1232 0.11609925355341932 No Hit GCAGGAGGGGGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGCT 1188 0.1119528516407972 No Hit GCAGGAGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCA 1175 0.11072777834843156 No Hit GCAGGAGGGGGTTTATTAAGTCCTGTGCCAGCACTTCGCTCATAAAGTTTTA 1168 0.11006812349869624 No Hit GCAGGAGAGGATGTTTCTGTGGGCCCCTTCACCCCTCCTCTGTCTGCACCTC 1148 0.10818339535659527 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.006031130054723082 0.0 0.0 0.0 0.0 7 0.006031130054723082 0.0 0.0 0.0 0.0 8 0.006219602868933178 0.0 0.0 0.0 0.0 9 0.006408075683143274 0.0 0.0 0.0 0.0 10 0.01027176837445025 0.0 0.0 0.0 0.0 11 0.019506936270744967 0.0 0.0 0.0 0.0 12 0.02591501195388824 0.0 0.0 0.0 0.0 13 0.028930576981249782 0.0 0.0 0.0 0.0 14 0.037411853620704115 0.0 0.0 0.0 0.0 15 0.04655278510989379 0.0 0.0 0.0 0.0 16 0.05833233599802481 0.0 0.0 0.0 0.0 17 0.06379804761011759 0.0 0.0 0.0 0.0 18 0.0712427237714164 0.0 0.0 0.0 0.0 19 0.08047789166771112 0.0 0.0 0.0 0.0 20 0.08556665765138372 0.0 0.0 0.0 0.0 21 0.09093813285637146 0.0 0.0 0.0 0.0 22 0.09762891776082988 0.0 0.0 0.0 0.0 23 0.10300039296581763 0.0 0.0 0.0 0.0 24 0.11129319679106187 0.0 0.0 0.0 0.0 25 0.11666467199604962 0.0 0.0 0.0 0.0 26 0.12194191079393231 0.0 0.0 0.0 0.0 27 0.1301404782120715 0.0 0.0 0.0 0.0 28 0.13946988251547127 0.0 0.0 0.0 0.0 29 0.1452183033488792 0.0 0.0 0.0 0.0 30 0.15021283292544674 0.0 0.0 0.0 0.0 31 0.15605549016595974 0.0 0.0 0.0 0.0 32 0.16199238381357778 0.0 0.0 0.0 0.0 33 0.16877740512514125 0.0 0.0 0.0 0.0 34 0.17499700799407442 0.0 0.0 0.0 0.0 35 0.18677655888220543 0.0 0.0 0.0 0.0 36 0.20091201994796265 0.0 0.0 0.0 0.0 37 0.20750856844531604 0.0 0.0 0.0 0.0 38 0.21344546209293405 0.0 0.0 0.0 0.0 39 0.2209843746613379 0.0 0.0 0.0 0.0 40 0.2291829420794771 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATTCG 35 1.0194708E-7 46.000004 25 CGACTAA 35 1.0194708E-7 46.000004 24 TCGCATT 20 6.3112355E-4 46.0 27 TACCACG 25 3.4169778E-5 46.0 36 CAACGGA 25 3.4169778E-5 46.0 46 CGAAACG 40 5.6115823E-9 46.0 20 ACGTTAA 25 3.4169778E-5 46.0 13 TAGCGTC 20 6.3112355E-4 46.0 28 TAGCGCG 20 6.3112355E-4 46.0 24 ATTCGGC 20 6.3112355E-4 46.0 17 CGTCTCG 60 0.0 46.0 42 ATTCGCG 25 3.4169778E-5 46.0 33 GATCACG 20 6.3112355E-4 46.0 9 TAACGAA 20 6.3112355E-4 46.0 39 GTAATCG 30 1.8612664E-6 46.0 43 ATATCGC 30 1.8612664E-6 46.0 23 GTAGCCG 30 1.8612664E-6 46.0 43 CACTCGA 20 6.3112355E-4 46.0 36 CCGTAAT 45 3.092282E-10 46.0 28 TACGCAC 25 3.4169778E-5 46.0 39 >>END_MODULE