##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527279_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1762020 Sequences flagged as poor quality 0 Sequence length 50 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.23662330734044 33.0 31.0 34.0 31.0 34.0 2 32.70991532445716 34.0 31.0 34.0 31.0 34.0 3 32.160830751069795 33.0 31.0 34.0 31.0 34.0 4 36.36764906187217 37.0 37.0 37.0 35.0 37.0 5 36.34134686325921 37.0 37.0 37.0 35.0 37.0 6 36.38770672296569 37.0 37.0 37.0 35.0 37.0 7 36.64353866584942 37.0 37.0 37.0 35.0 37.0 8 36.67684021747767 37.0 37.0 37.0 35.0 37.0 9 38.55240519403866 39.0 39.0 39.0 37.0 39.0 10 36.39636780513275 37.0 35.0 39.0 33.0 39.0 11 35.887219781841296 37.0 35.0 39.0 32.0 39.0 12 35.79904938649958 37.0 35.0 39.0 32.0 39.0 13 35.88492752636179 37.0 35.0 39.0 32.0 39.0 14 36.560544715724 38.0 35.0 40.0 33.0 40.0 15 36.669321006572005 38.0 35.0 40.0 33.0 40.0 16 36.59321233584182 38.0 35.0 40.0 33.0 40.0 17 36.657305819457214 38.0 35.0 40.0 33.0 40.0 18 36.62358770048013 38.0 35.0 40.0 33.0 40.0 19 36.62408882986572 38.0 35.0 40.0 33.0 40.0 20 36.310189441663546 38.0 35.0 40.0 32.0 40.0 21 36.512903372265924 38.0 35.0 40.0 33.0 40.0 22 36.375963950465945 38.0 35.0 40.0 33.0 40.0 23 36.45761739367317 38.0 35.0 40.0 33.0 40.0 24 36.477038285604024 38.0 35.0 40.0 33.0 40.0 25 36.464683147750875 38.0 35.0 40.0 33.0 40.0 26 36.33066026492321 38.0 35.0 40.0 33.0 40.0 27 36.25548801943224 37.0 35.0 40.0 32.0 40.0 28 36.086378701717344 37.0 35.0 40.0 32.0 40.0 29 36.34324184742511 38.0 35.0 40.0 33.0 40.0 30 36.39083778844735 38.0 35.0 40.0 33.0 40.0 31 36.399748016481084 38.0 35.0 40.0 33.0 40.0 32 35.70104255343299 37.0 35.0 40.0 31.0 40.0 33 35.934842396794586 37.0 35.0 40.0 31.0 40.0 34 36.00335410494773 37.0 35.0 40.0 31.0 40.0 35 36.025088818515115 37.0 35.0 40.0 32.0 40.0 36 35.9010533365115 36.0 35.0 40.0 31.0 40.0 37 35.88459835870194 36.0 35.0 40.0 31.0 40.0 38 35.71191189657325 36.0 35.0 40.0 31.0 40.0 39 35.70148806483468 36.0 35.0 40.0 31.0 40.0 40 35.62331358327374 36.0 35.0 40.0 31.0 40.0 41 35.52374660900557 36.0 35.0 40.0 31.0 40.0 42 35.458551548790595 36.0 35.0 40.0 31.0 40.0 43 35.388259497622045 35.0 35.0 40.0 30.0 40.0 44 35.2647189021691 35.0 35.0 40.0 30.0 40.0 45 35.20458224083722 35.0 35.0 40.0 30.0 40.0 46 34.97179260167308 35.0 34.0 40.0 29.0 40.0 47 34.912967503206545 35.0 34.0 40.0 29.0 40.0 48 34.87018819309656 35.0 34.0 40.0 29.0 40.0 49 34.63583841273084 35.0 34.0 40.0 28.0 40.0 50 34.19341040396817 35.0 33.0 39.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 2.0 13 4.0 14 10.0 15 50.0 16 152.0 17 315.0 18 620.0 19 1008.0 20 1604.0 21 2506.0 22 3748.0 23 5025.0 24 6949.0 25 9082.0 26 12061.0 27 15918.0 28 20770.0 29 27313.0 30 35766.0 31 46062.0 32 62863.0 33 106727.0 34 287489.0 35 215506.0 36 88847.0 37 161094.0 38 415511.0 39 235016.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 100.0 0.0 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 98.77379371403275 0.9935188022837426 0.16611616213209837 0.06657132155140123 8 97.48822374320383 1.7794349666859628 0.4599834281109182 0.2723578619992963 9 90.53580549596487 4.881499642455818 3.033393491560822 1.5493013700185014 10 42.82346397884246 41.30435522865802 6.718028172211439 9.154152620288079 11 30.377521254015278 22.694294048875722 26.51417123528677 20.41401346182223 12 28.070282970681376 16.876482673295424 29.594783260121904 25.458451095901296 13 24.35971214855677 18.288782193164664 30.550901805881885 26.80060385239668 14 23.8032485442844 20.379053586224902 31.649300234957607 24.168397634533093 15 24.00977287431471 22.77119442458088 28.052462514613907 25.166570186490507 16 29.433320847663474 22.256274049102736 25.28995130588756 23.020453797346228 17 28.736052939240192 21.048796267919773 24.63683726631934 25.578313526520695 18 26.50327465068501 21.529778322607008 26.194367827833965 25.77257919887402 19 27.968184243084643 21.35571673420279 25.708277999114653 24.967821023597917 20 26.984994494954655 21.782442878060408 27.285558620219973 23.947004006764963 21 27.40082405421051 20.57729197171428 27.568415795507427 24.453468178567782 22 26.801114629799887 21.322970227352698 26.97511946515931 24.90079567768811 23 25.67212630957651 22.423298259951647 27.361777959387524 24.542797471084324 24 25.92093165798345 23.291619845404707 25.472525851011905 25.314922645599935 25 26.737721478757337 23.02272391913826 26.029556985732285 24.209997616372117 26 26.452707687767447 23.173800524398132 25.363219486725463 25.010272301108955 27 25.878366874382813 21.32177841341188 25.625078035436598 27.17477667676871 28 26.07234878151213 21.80934382129601 25.232119953235493 26.886187443956366 29 26.51939251540845 22.318702398383675 25.536032508144064 25.625872578063813 30 26.85429223277829 21.130066628074594 26.578926459404546 25.43671467974257 31 26.79839048364945 22.951158329644386 25.784724350461403 24.465726836244762 32 29.288089806018093 22.10576497429087 24.725088250984665 23.88105696870637 33 28.165911851170815 21.979148931340166 25.78580265831262 24.0691365591764 34 26.696405262142314 22.987537031361732 27.305535691989874 23.01052201450608 35 25.483025164300066 24.194220269917484 28.078058137819095 22.24469642796336 36 25.889376965074177 23.64899376851568 26.198681059238826 24.262948207171313 37 26.7754055005051 24.752556724668278 24.15477690378089 24.317260871045733 38 27.31813486793567 24.70494092008036 25.263163868741557 22.713760343242413 39 27.090782170463445 23.067615577575737 24.51521549131111 25.32638676064971 40 25.464977696053392 23.441277624544558 25.597155537394585 25.49658914200747 41 24.43757732602354 25.405159986833294 25.14994154436386 25.00732114277931 42 24.978547349065277 23.826801057876757 25.405330245967694 25.789321347090272 43 24.7738391164686 23.478394115844313 27.08697971646179 24.6607870512253 44 25.337340098296274 23.260348917719437 26.491583523456036 24.910727460528257 45 26.39368452117456 22.788958127603546 25.63018580946868 25.187171541753216 46 25.332856607757005 23.91834371914053 25.641479665384047 25.107320007718414 47 24.208976061565703 23.54451141303731 26.558098091962634 25.688414433434353 48 25.98614090645963 24.028047354740583 24.711183755008456 25.27462798379133 49 25.268782420176844 24.569017377782316 24.769525885063732 25.392674316977104 50 24.527984926391298 24.972020748913177 25.638982531412815 24.86101179328271 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 1.5 6 3.0 7 97.0 8 191.0 9 302.5 10 414.0 11 700.0 12 986.0 13 2082.0 14 3178.0 15 3677.0 16 4176.0 17 4273.5 18 4371.0 19 5227.0 20 6083.0 21 5920.5 22 5758.0 23 6266.0 24 6774.0 25 8865.0 26 10956.0 27 11090.0 28 11224.0 29 12649.0 30 14074.0 31 20209.5 32 26345.0 33 26740.5 34 27136.0 35 30164.5 36 33193.0 37 36822.0 38 40451.0 39 43777.5 40 47104.0 41 57760.5 42 68417.0 43 72108.0 44 75799.0 45 75791.5 46 75784.0 47 78388.5 48 80993.0 49 87403.5 50 93814.0 51 99731.5 52 105649.0 53 106995.5 54 108342.0 55 119219.5 56 130097.0 57 135067.5 58 140038.0 59 139237.5 60 138437.0 61 133311.0 62 128185.0 63 121759.5 64 115334.0 65 101588.0 66 87842.0 67 72037.5 68 56233.0 69 47710.5 70 39188.0 71 35236.0 72 31284.0 73 24370.5 74 17457.0 75 16393.0 76 15329.0 77 11596.0 78 7863.0 79 5047.5 80 2232.0 81 1518.5 82 805.0 83 603.0 84 401.0 85 222.5 86 44.0 87 35.5 88 27.0 89 17.0 90 7.0 91 4.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1762020.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 7.841645715541776 #Duplication Level Percentage of deduplicated Percentage of total 1 65.81858716597127 5.161260420530514 2 10.748431964116369 1.6857079092041076 3 4.700146699334577 1.1057065568176438 4 2.5009106333836884 0.7844502061290426 5 1.4202864414099867 0.5568691544062347 6 0.8998084660130699 0.42335875213917634 7 0.5971369094838259 0.327777526149199 8 0.44992391873458953 0.2822515175731888 9 0.3345670912214298 0.23612009376940196 >10 5.261484735940852 11.573751029038554 >50 3.8909142004510984 22.001543722033396 >100 3.2301218391428854 44.45035615430725 >500 0.1100064820421883 5.856974897942795 >1k 0.035413045588923636 4.540693216735786 >5k 0.0022604071652504443 1.013178843223709 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 6362 0.36106287102303036 No Hit AGATGGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 5683 0.3225275536032508 No Hit AGATGGGGGAGTTAACTTTGCATCTTCATACTCCTCAAGCAGACATCACT 5103 0.28961078761875575 No Hit AGATGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 4582 0.260042451277511 No Hit AGATGGGGGAACAACAAAACACTATTGTTTTCTTTTCTACAGCATTAGAG 4564 0.25902089647109566 No Hit AGATGGGGGAATTCATACAAAAACTACTCCAGTGTCTTGTACTGACTGCT 4408 0.25016742148216253 No Hit AGATGGGGGATTATTTGATCTTATCTTGGATCCTTTTGAAAAGTTAAGAA 2430 0.13790989886607416 No Hit AGATGGGGGACTGTAGCGTTCTGGCTGCTTAACAGCTGGCTCTGGTTTCG 2302 0.1306455091315649 No Hit AGATGGGGGTGTGTGGTTCCTCAGCGATGTAATCTTGTTTAAATGTAAAG 2089 0.1185571105889831 No Hit AGATGGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 2081 0.11810308623057626 No Hit AGATGGGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 2072 0.11759230882736858 No Hit AGATGGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 1978 0.11225752261608835 No Hit AGATGGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 1886 0.10703624249440982 No Hit AGATGGGGGAGAGTAAGTTTTGAATTTAGGATGTGTTAGTTCTCTAGCTT 1856 0.1053336511503842 No Hit AGATGGGGGACTCCCTGGCCAGGTCATCCATCACTGTCAGTCACTGTCTA 1836 0.10419859025436716 No Hit AGATGGGGGCCAGGAGGAGTACATCAAGCGCGCCCTGGCCAACAGCCTCG 1813 0.10289327022394751 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 1.1350608960170714E-4 0.0 0.0 0.0 0.0 8 0.001191813940817925 0.0 0.0 0.0 0.0 9 0.002497133971237557 0.0 0.0 0.0 0.0 10 0.008229191496123767 0.0 0.0 0.0 0.0 11 0.012542422900988639 0.0 0.0 0.0 0.0 12 0.01594760558903985 0.0 0.0 0.0 0.0034051826880512137 13 0.020487849173108138 0.0 0.0 0.0 0.0034051826880512137 14 0.02911431198283788 0.0 0.0 0.0 0.0034051826880512137 15 0.037513762613364206 0.0 0.0 0.0 0.0034051826880512137 16 0.047956322856721266 0.0 0.0 0.0 0.0034051826880512137 17 0.05522071259123052 0.0 0.0 0.0 0.0034051826880512137 18 0.06276886754974405 0.0 0.0 0.0 0.0034051826880512137 19 0.070146763373855 0.0 0.0 0.0 0.0034051826880512137 20 0.07655985743635146 0.0 0.0 0.0 0.0034051826880512137 21 0.08246217409564023 0.0 0.0 0.0 0.0034051826880512137 22 0.08870500902373413 0.0 0.0 0.0 0.0034051826880512137 23 0.0932452526078024 0.0 0.0 0.0 0.0034051826880512137 24 0.10090691365591764 0.0 0.0 0.0 0.0034051826880512137 25 0.10612819377759616 0.0 0.0 0.0 0.0034051826880512137 26 0.1113494738992747 0.0 0.0 0.0 0.0034051826880512137 27 0.11702477837936005 0.0 0.0 0.0 0.0034051826880512137 28 0.12235956459064029 0.0 0.0 0.0 0.0034051826880512137 29 0.12848889342913247 0.0 0.0 0.0 0.0034051826880512137 30 0.1346749753124255 0.0 0.0 0.0 0.0034051826880512137 31 0.13955573716529893 0.0 0.0 0.0 0.0034051826880512137 32 0.14613909036219794 0.0 0.0 0.0 0.0034051826880512137 33 0.15215491311108842 0.0 0.0 0.0 0.0034051826880512137 34 0.15788697063597462 0.0 0.0 0.0 0.0034051826880512137 35 0.1656053847288907 0.0 0.0 0.0 0.0034051826880512137 36 0.17235899706019228 0.0 0.0 0.0 0.0034051826880512137 37 0.1789423502570913 0.0 0.0 0.0 0.0034051826880512137 38 0.18478791387157922 0.0 0.0 0.0 0.0034051826880512137 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAC 20 7.8576244E-4 44.000004 12 CGCATTA 20 7.8576244E-4 44.000004 12 TACGCAA 20 7.8576244E-4 44.000004 34 CGAATTA 40 8.3164196E-9 44.000004 41 CCGAATT 20 7.8576244E-4 44.000004 44 ATACGAC 20 7.8576244E-4 44.000004 37 GACCTAA 20 7.8576244E-4 44.000004 9 AGCGTAA 25 4.4438097E-5 44.0 30 CCGATAG 45 4.802132E-10 44.0 27 TAGACGC 35 1.4466787E-7 44.0 27 CGTTCGA 30 2.528488E-6 44.0 19 CCGTACG 35 1.4466787E-7 44.0 34 TACGCGC 35 1.4466787E-7 44.0 37 TATCTCG 30 2.528488E-6 44.0 13 ATCGCGT 55 1.8189894E-12 44.0 19 GCGTAAT 25 4.4438097E-5 44.0 31 CCGCAAT 25 4.4438097E-5 44.0 19 ACGACGC 25 4.4438097E-5 44.0 21 ACGAAAT 25 4.4438097E-5 44.0 20 CGTAGAT 85 0.0 43.999996 32 >>END_MODULE