##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527278_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1860750 Sequences flagged as poor quality 0 Sequence length 52 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25268467015988 33.0 31.0 34.0 31.0 34.0 2 32.70519145505845 34.0 31.0 34.0 31.0 34.0 3 32.10951659277173 33.0 31.0 34.0 31.0 34.0 4 36.30119252989386 37.0 37.0 37.0 35.0 37.0 5 36.292158000806126 37.0 37.0 37.0 35.0 37.0 6 36.40682090554884 37.0 37.0 37.0 35.0 37.0 7 36.64573639661427 37.0 37.0 37.0 35.0 37.0 8 36.64016767432487 37.0 37.0 37.0 35.0 37.0 9 38.51289318823055 39.0 39.0 39.0 37.0 39.0 10 36.316081687491604 37.0 35.0 39.0 33.0 39.0 11 35.82315571678087 37.0 35.0 39.0 32.0 39.0 12 35.7569781002284 37.0 35.0 39.0 32.0 39.0 13 35.892734650006716 37.0 35.0 39.0 32.0 39.0 14 36.559753862689774 38.0 35.0 40.0 33.0 40.0 15 36.5719731291146 38.0 35.0 40.0 33.0 40.0 16 31.699871019750102 35.0 33.0 40.0 3.0 40.0 17 33.11141045277442 35.0 33.0 40.0 17.0 40.0 18 35.092529893860004 35.0 33.0 40.0 27.0 40.0 19 36.09751874244257 37.0 35.0 40.0 31.0 40.0 20 36.34863898965471 38.0 35.0 40.0 32.0 40.0 21 36.58876635765149 38.0 35.0 40.0 33.0 40.0 22 36.64233669219401 38.0 35.0 40.0 33.0 40.0 23 36.627132607819426 38.0 35.0 40.0 33.0 40.0 24 36.5847131532984 38.0 35.0 40.0 33.0 40.0 25 36.552688969501546 38.0 35.0 40.0 33.0 40.0 26 36.44672363294371 38.0 35.0 40.0 33.0 40.0 27 36.366498992341796 38.0 35.0 40.0 33.0 40.0 28 36.26566706972995 37.0 35.0 40.0 32.0 40.0 29 36.11794007792557 37.0 35.0 40.0 32.0 40.0 30 36.1034088405213 37.0 35.0 40.0 32.0 40.0 31 36.10233078059922 37.0 35.0 40.0 32.0 40.0 32 36.050786510815534 37.0 35.0 40.0 32.0 40.0 33 35.771817815397014 36.0 35.0 40.0 31.0 40.0 34 35.75811742576918 36.0 35.0 40.0 31.0 40.0 35 35.71909928792154 36.0 35.0 40.0 31.0 40.0 36 35.729691790944514 36.0 35.0 40.0 31.0 40.0 37 35.487661964261726 36.0 34.0 40.0 30.0 40.0 38 35.46775010076582 35.0 34.0 40.0 30.0 40.0 39 35.1346822517802 35.0 34.0 40.0 30.0 40.0 40 35.116968964127366 35.0 34.0 40.0 29.0 40.0 41 35.092679295982805 35.0 34.0 40.0 30.0 40.0 42 35.08129302700524 35.0 34.0 40.0 30.0 40.0 43 35.01124385328497 35.0 34.0 40.0 29.0 40.0 44 35.272841058712885 35.0 34.0 40.0 30.0 40.0 45 35.360719602310894 35.0 34.0 40.0 31.0 40.0 46 35.34578745129652 35.0 35.0 40.0 31.0 40.0 47 35.08188042455999 35.0 34.0 40.0 30.0 40.0 48 35.08958645707376 35.0 34.0 40.0 30.0 40.0 49 35.06325728872766 35.0 34.0 40.0 30.0 40.0 50 34.59421523579202 35.0 34.0 40.0 28.0 40.0 51 34.68255810828967 35.0 34.0 39.0 29.0 40.0 52 34.372527206771466 35.0 34.0 39.0 28.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 4.0 14 12.0 15 63.0 16 132.0 17 297.0 18 557.0 19 1046.0 20 1721.0 21 2536.0 22 3826.0 23 5419.0 24 7530.0 25 9980.0 26 13387.0 27 17877.0 28 23802.0 29 31986.0 30 42154.0 31 58207.0 32 89644.0 33 158430.0 34 283085.0 35 197180.0 36 129289.0 37 232662.0 38 360824.0 39 189096.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 100.0 0.0 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 98.78876796990461 0.9818084105871289 0.16745935778583906 0.06196426172242375 8 97.49638586591428 1.775198172779793 0.46878946661292487 0.25962649469300014 9 90.57138250705361 4.862555421201129 3.0418917103318557 1.5241703614134086 10 42.98352814725245 41.07327690447401 6.767486228671235 9.175708719602312 11 30.499046083568455 22.72900712078463 26.290044336960904 20.48190245868601 12 28.1279591562542 16.812844283219132 29.508853956737873 25.550342603788796 13 24.460459492140266 18.278973532177886 30.445573021631063 26.814993954050788 14 23.771436248824397 20.300147789869676 31.61961574633884 24.308800214967082 15 24.094693000134352 22.709713825070533 28.073518742442566 25.122074432352548 16 27.90450087330378 29.84371893053876 22.299932822786513 19.951847373370953 17 28.855515249227466 20.979604997984683 24.558914416230017 25.60596533655784 18 26.638291011688835 21.5235792019347 26.09560661023781 25.742523176138654 19 28.05578395808142 21.263146580679834 25.66787585650947 25.013193604729278 20 26.98213086121188 21.577159747413678 27.399650678489856 24.04105871288459 21 27.430014778986965 20.48888888888889 27.66019078328631 24.420905548837833 22 26.652371355636166 21.15012763670563 27.079242241031842 25.11825876662636 23 25.736557839580815 22.31933360204219 27.380464866317343 24.563643692059653 24 26.095875319091768 23.128469703076714 25.372027408303104 25.403627569528414 25 26.816606207174527 22.958376998522102 25.936047292758296 24.288969501545076 26 26.592341797662232 23.030444713153297 25.289695015450757 25.08751847373371 27 25.91143356173586 21.265081284428323 25.50541448340723 27.31807067042859 28 26.353352142953113 21.655945183393793 25.050167943033724 26.940534730619376 29 26.775010076582024 22.23490528012898 25.44216041918581 25.547924224103184 30 26.940427247077793 21.006798334005104 26.507967217519816 25.544807201397283 31 26.9850866586054 22.87690447400242 25.631385194142148 24.506623673250033 32 29.268681983071343 21.77261856778181 24.851108424022573 24.10759102512428 33 28.551927986027138 21.839150880021496 25.62520489050114 23.98371624345022 34 26.630283487840924 22.911137981996507 27.213757893322587 23.244820636839982 35 25.610157194679566 24.25602579604998 27.93185543463657 22.201961574633884 36 25.869246271664654 23.591508800214967 26.18110976756684 24.35813516055354 37 26.952142953110304 24.754319494827353 23.983071342200727 24.310466209861616 38 27.29168346097004 24.796453043127773 25.092946392583638 22.818917103318554 39 27.326938062609162 23.089668144565366 24.432406287787185 25.15098750503829 40 25.551578664516995 23.301034529087733 25.51014375923687 25.637243047158403 41 24.455945183393794 25.341502082493616 25.017922880558913 25.184629853553673 42 24.98551659277173 23.737847642079807 25.41023780733575 25.86639795781271 43 24.932527206771464 23.373532177885263 26.92914147521161 24.764799140131668 44 25.43759236866855 23.164369205965336 26.44869004433696 24.949348381029154 45 26.32336423485154 22.84551927986027 25.621711675399705 25.209404809888486 46 24.97836893725648 23.945559586188363 25.735644229477362 25.34042724707779 47 24.465994894531775 23.437861077522506 26.49361816471853 25.602525863227193 48 26.069756818487168 23.94776299879081 24.612118769313447 25.37036141340857 49 25.23235254601639 24.599596936719063 24.731747951094988 25.436302566169555 50 24.501142012629316 24.938116350933765 25.623431412065028 24.937310224371892 51 24.095069192529895 25.338331318016927 25.529168346097002 25.037431143356176 52 24.834932151014378 25.122934300685205 25.79470643557705 24.247427112723365 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 1.0 7 77.0 8 153.0 9 272.5 10 392.0 11 720.0 12 1048.0 13 2096.0 14 3681.5 15 4219.0 16 4415.0 17 4611.0 18 5329.0 19 6047.0 20 5929.5 21 5812.0 22 5896.5 23 5981.0 24 7907.0 25 9833.0 26 10346.0 27 10859.0 28 11965.5 29 13072.0 30 17827.5 31 22583.0 32 22918.0 33 23253.0 34 27171.5 35 31090.0 36 32773.5 37 34457.0 38 39190.0 39 48710.5 40 53498.0 41 57861.5 42 62225.0 43 70271.0 44 78317.0 45 79043.5 46 79770.0 47 83466.5 48 87163.0 49 91891.0 50 96619.0 51 100140.5 52 103662.0 53 107689.5 54 111717.0 55 121327.5 56 130938.0 57 139497.5 58 148057.0 59 147050.0 60 146043.0 61 138159.0 62 130275.0 63 124053.5 64 104912.5 65 91993.0 66 79214.5 67 66436.0 68 55262.5 69 44089.0 70 39641.5 71 35194.0 72 29580.0 73 23966.0 74 20533.5 75 17101.0 76 12714.0 77 8327.0 78 6642.5 79 4958.0 80 3186.0 81 1414.0 82 975.5 83 537.0 84 321.0 85 105.0 86 56.5 87 8.0 88 7.0 89 6.0 90 6.0 91 8.5 92 11.0 93 8.0 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1860750.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.31381761026722 #Duplication Level Percentage of deduplicated Percentage of total 1 70.06384569632655 6.5256187988949135 2 9.821499361126444 1.829513074177754 3 4.012337784122733 1.1211054693630855 4 2.0589286939179283 0.7670594531078915 5 1.208256518679692 0.5626740420699539 6 0.751586046739743 0.4200081214653444 7 0.48817458866733016 0.31827383565703143 8 0.35876826522581146 0.26732017493321464 9 0.27445245794365725 0.2300580122379082 >10 4.816331089025302 12.63980597920138 >50 3.411921082724143 22.721062202283594 >100 2.620894637630051 42.19440309766108 >500 0.08392678239511257 5.34231259287286 >1k 0.027755313862950614 4.313204829323034 >5k 0.001321681612521458 0.7475803167509678 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 6178 0.3320166599489453 No Hit AGATGGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 5968 0.32073088808276234 No Hit AGATGGGGGAGTTAACTTTGCATCTTCATACTCCTCAAGCAGACATCACTCT 4744 0.2549509606341529 No Hit AGATGGGGGAACAACAAAACACTATTGTTTTCTTTTCTACAGCATTAGAGAT 4494 0.241515517936316 No Hit AGATGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 4033 0.2167405616015048 No Hit AGATGGGGGAATTCATACAAAAACTACTCCAGTGTCTTGTACTGACTGCTGC 3649 0.19610372161762732 No Hit AGATGGGGGATTATTTGATCTTATCTTGGATCCTTTTGAAAAGTTAAGAATA 2281 0.12258497917506381 No Hit AGATGGGGGACTGTAGCGTTCTGGCTGCTTAACAGCTGGCTCTGGTTTCGAC 2228 0.1197366653231224 No Hit AGATGGGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC 2125 0.1142012629316136 No Hit AGATGGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 2025 0.10882708585247886 No Hit AGATGGGGGTGTGTGGTTCCTCAGCGATGTAATCTTGTTTAAATGTAAAGTT 1885 0.10130323794169019 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 2.687088539567379E-4 0.0 0.0 0.0 0.0 8 0.0011285771866182991 0.0 0.0 0.0 0.0 9 0.0023646379148192934 0.0 2.149670831653903E-4 0.0 0.0 10 0.008759908638989655 0.0 2.149670831653903E-4 0.0 0.0 11 0.012790541448340723 0.0 2.149670831653903E-4 0.0 5.374177079134758E-5 12 0.01553137175869945 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 13 0.01950826279725917 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 14 0.028106946123874783 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 15 0.036490662367325004 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 16 0.04922746204487438 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 17 0.05605266693537552 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 18 0.06443638317882575 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 19 0.07233642348515383 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 20 0.07948407900040307 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 21 0.08598683326615612 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 22 0.09098481794975144 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 23 0.09614402794572081 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 24 0.10318419991938735 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 25 0.1087733440816875 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 26 0.1129652022034126 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 27 0.11758699449146849 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 28 0.12296117157060325 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 29 0.1291414752116082 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 30 0.13354830041649873 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 31 0.13902996103721618 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 32 0.1439204621792288 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 33 0.1498857987370684 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 34 0.15574365175332527 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 35 0.16348246674727931 0.0 2.149670831653903E-4 0.0 0.0036006986430202875 36 0.17003896278382372 0.0 2.149670831653903E-4 5.374177079134758E-5 0.0036006986430202875 37 0.17675668413274218 0.0 2.149670831653903E-4 5.374177079134758E-5 0.0036006986430202875 38 0.18132473465000673 0.0 2.149670831653903E-4 5.374177079134758E-5 0.0036006986430202875 39 0.186161494021228 0.0 2.149670831653903E-4 5.374177079134758E-5 0.0036006986430202875 40 0.1941690178691388 0.0 2.149670831653903E-4 5.374177079134758E-5 0.0036006986430202875 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTACGT 35 1.0200347E-7 46.000004 22 TCGCATA 30 1.8620285E-6 46.0 19 CGCATTA 20 6.312467E-4 46.0 12 ACGGGTA 30 1.8620285E-6 46.0 15 CGTTACG 20 6.312467E-4 46.0 22 TACGCTA 30 1.8620285E-6 46.0 34 CGTAAAC 20 6.312467E-4 46.0 22 TATACGC 25 3.4179764E-5 46.0 19 TATCGTC 20 6.312467E-4 46.0 24 TATCGCC 25 3.4179764E-5 46.0 30 TAATGCG 40 5.6152203E-9 46.0 39 GATGGGG 184360 0.0 44.638912 2 AGATGGG 189310 0.0 44.6089 1 ATGGGGG 167860 0.0 44.592815 3 TGGGGGA 70590 0.0 44.55659 4 TAGCGTT 240 0.0 44.083332 14 TGGGGGG 74320 0.0 43.994617 4 ATGGGGT 5510 0.0 43.704174 3 AATACGC 80 0.0 43.125 23 CGCTAGT 75 0.0 42.93333 46 >>END_MODULE