##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527243_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2555394 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12517013032041 33.0 31.0 34.0 31.0 34.0 2 32.52300075839577 34.0 31.0 34.0 31.0 34.0 3 32.73553628129361 34.0 31.0 34.0 31.0 34.0 4 36.34643268317919 37.0 37.0 37.0 35.0 37.0 5 34.949169482279444 35.0 35.0 37.0 33.0 37.0 6 35.817876225740534 37.0 35.0 37.0 35.0 37.0 7 36.533813963717535 37.0 37.0 37.0 35.0 37.0 8 36.62950409995484 37.0 37.0 37.0 35.0 37.0 9 38.5786555810963 39.0 39.0 39.0 37.0 39.0 10 37.86705924800638 39.0 38.0 39.0 35.0 39.0 11 37.18791153145073 39.0 37.0 39.0 34.0 39.0 12 37.177335471555466 39.0 37.0 39.0 34.0 39.0 13 37.023779111949075 39.0 37.0 39.0 33.0 39.0 14 37.87850405847396 40.0 37.0 40.0 33.0 40.0 15 37.92340633186115 40.0 38.0 40.0 34.0 40.0 16 37.65892226404226 40.0 37.0 40.0 33.0 40.0 17 37.62016972725145 40.0 37.0 40.0 33.0 40.0 18 37.733916570204045 40.0 37.0 40.0 33.0 40.0 19 37.57423082311377 40.0 37.0 40.0 33.0 40.0 20 37.534442046901574 40.0 37.0 40.0 33.0 40.0 21 37.73593778493649 40.0 37.0 40.0 33.0 40.0 22 37.419733317054046 40.0 37.0 40.0 33.0 40.0 23 37.43483001055806 40.0 37.0 40.0 33.0 40.0 24 37.52747599783047 40.0 37.0 40.0 33.0 40.0 25 37.439005883241485 39.0 36.0 40.0 33.0 40.0 26 37.30358371350954 39.0 36.0 40.0 33.0 40.0 27 37.2422334872822 39.0 36.0 40.0 33.0 40.0 28 37.11553247757489 39.0 35.0 40.0 32.0 40.0 29 37.35852905657601 40.0 36.0 40.0 33.0 40.0 30 37.33915083153518 40.0 36.0 40.0 33.0 40.0 31 37.263818808371624 40.0 35.0 40.0 33.0 40.0 32 36.383074782205796 40.0 35.0 40.0 30.0 40.0 33 36.58230081153826 39.0 35.0 40.0 31.0 40.0 34 36.453743336643974 39.0 35.0 40.0 30.0 40.0 35 36.624159718618735 39.0 35.0 40.0 31.0 40.0 36 36.431916956837185 39.0 35.0 40.0 31.0 40.0 37 36.27324553473946 39.0 35.0 40.0 30.0 40.0 38 36.05033079047693 39.0 35.0 40.0 30.0 40.0 39 36.01038039535195 39.0 35.0 40.0 30.0 40.0 40 35.741950165023475 39.0 35.0 40.0 30.0 40.0 41 35.63664820376036 38.0 35.0 40.0 29.0 40.0 42 35.445769223845716 38.0 35.0 40.0 28.0 40.0 43 35.29722265920637 38.0 35.0 40.0 28.0 40.0 44 35.21889501188466 38.0 35.0 40.0 27.0 40.0 45 35.01962163173272 38.0 35.0 40.0 26.0 40.0 46 34.69740087047242 37.0 34.0 40.0 24.0 40.0 47 34.639631696716826 37.0 34.0 40.0 24.0 40.0 48 34.50340064976282 37.0 34.0 40.0 24.0 40.0 49 34.1620294169901 36.0 34.0 40.0 23.0 40.0 50 33.64163256233677 35.0 33.0 40.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 4.0 13 3.0 14 5.0 15 34.0 16 91.0 17 254.0 18 472.0 19 918.0 20 1581.0 21 2808.0 22 4434.0 23 6634.0 24 9847.0 25 13982.0 26 19605.0 27 27575.0 28 37040.0 29 45472.0 30 53697.0 31 61036.0 32 74281.0 33 101610.0 34 181182.0 35 180870.0 36 248062.0 37 399874.0 38 745739.0 39 338281.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 0.0 100.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 100.0 0.0 0.0 0.0 7 99.18583983526611 0.4845828079740345 0.26958660777946575 0.05999074898039206 8 98.51791935020587 0.7491995363532982 0.34746109601885267 0.3854200174219709 9 92.7346233105345 3.4732021754766587 1.993430367293654 1.7987441466951866 10 40.75125010076724 42.68919000357675 6.871699628315634 9.687860267340378 11 24.927467153793113 25.505303683111098 28.60474744794736 20.962481715148424 12 32.401422246432446 16.882954252847114 30.639384768063167 20.076238732657274 13 27.905872832134694 16.69441189890874 29.605571587003805 25.794143681952765 14 23.857416899311808 22.83103897089842 28.248403181662006 25.063140948127767 15 27.088973363794388 20.9584901584648 30.69526656163394 21.25726991610687 16 30.41902735938176 23.366651091769018 28.486918259963044 17.727403288886176 17 30.85238518991592 21.545718585861906 29.29736079837395 18.304535425848226 18 33.124676664342175 20.675911425009215 26.449345971697515 19.750065938951096 19 29.860757284395284 21.852285792327915 28.813599781481834 19.473357141794963 20 30.416092391232034 24.147196087961387 25.471845046204226 19.96486647460235 21 28.925598166075368 22.205068963924937 30.117703962676597 18.7516289073231 22 27.377813362636054 23.36046809220026 25.846816577013172 23.41490196815051 23 23.25171773902576 28.09273247100056 27.451970224552458 21.203579565421222 24 25.107400267825625 26.63902317998712 28.351714060532345 19.901862491654907 25 26.398825386613574 24.74843409665985 25.545727977759984 23.307012538966593 26 27.234899980198747 26.773014259249255 26.203239109115856 19.78884665143614 27 25.187857528036773 24.512032195426613 25.897024098827814 24.4030861777088 28 25.57609511488248 28.68007829712365 25.11276147631246 20.63106511168141 29 29.6112849916686 26.018023052413835 24.02482748257216 20.3458644733454 30 26.260960149393792 29.023195640280914 24.653028065339434 20.062816144985863 31 27.13464146820412 27.8640788856826 24.496300766144085 20.504978879969194 32 24.90038718099831 28.769496993418624 26.91714076185512 19.41297506372794 33 27.575591083018903 27.768672854362187 24.817816743719366 19.83791931889955 34 22.461546047302296 29.986686984472843 26.601572986396622 20.950193981828242 35 21.690745145367014 33.471355102187765 26.809329598488528 18.02857015395669 36 24.58845876604547 33.08926138200215 25.187896660945437 17.134383191006943 37 24.39005491912402 31.356299654769483 25.511682347223168 18.741963078883334 38 24.41717402482748 32.04640849904163 24.44664110505073 19.089776371080156 39 23.767998203016834 31.137233632073958 23.939009013874184 21.155759151035024 40 23.582899545040803 30.899188148676878 25.448326168097758 20.06958613818456 41 23.097455813076184 32.05274803024504 24.013596337785874 20.836199818892897 42 21.452699661969934 31.20990344346116 23.57464250131291 23.762754393255992 43 22.009326154792568 30.44411155383475 25.647395274466483 21.899167016906198 44 23.02537299531892 31.023943861494548 24.410951892350063 21.539731250836468 45 22.624886808061692 31.694016656531243 25.022481856026896 20.658614679380165 46 24.412673740331236 32.58648177149981 23.66112622945816 19.33971825871079 47 23.29965555213795 30.690648878411704 24.69873530265783 21.310960266792517 48 23.896549807974818 30.63147992051324 25.162616801949135 20.309353469562815 49 24.492778804364416 32.03866018312636 24.338477745506175 19.130083267003055 50 21.973519543365917 32.627845255956615 24.934432811535128 20.46420238914234 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 19.5 8 39.0 9 116.0 10 193.0 11 1727.5 12 3262.0 13 9763.5 14 16265.0 15 12779.0 16 9293.0 17 10729.0 18 12165.0 19 12307.5 20 12450.0 21 12718.0 22 12986.0 23 14469.5 24 15953.0 25 15731.5 26 15510.0 27 18781.0 28 22052.0 29 28021.5 30 33991.0 31 43019.0 32 52047.0 33 55112.0 34 58177.0 35 61971.5 36 65766.0 37 81166.0 38 96566.0 39 100940.5 40 105315.0 41 110851.0 42 116387.0 43 107656.5 44 98926.0 45 101741.0 46 104556.0 47 107646.5 48 110737.0 49 114962.0 50 119187.0 51 123309.5 52 127432.0 53 133101.0 54 138770.0 55 143119.5 56 147469.0 57 153690.0 58 159911.0 59 174367.0 60 188823.0 61 183748.0 62 178673.0 63 170717.0 64 162761.0 65 150803.0 66 138845.0 67 117231.5 68 95618.0 69 75904.5 70 56191.0 71 43894.0 72 31597.0 73 25610.5 74 19624.0 75 16844.0 76 14064.0 77 11016.5 78 7969.0 79 5718.5 80 3468.0 81 2286.5 82 1105.0 83 965.5 84 826.0 85 551.0 86 276.0 87 177.0 88 78.0 89 61.0 90 44.0 91 28.0 92 12.0 93 8.0 94 4.0 95 7.5 96 11.0 97 5.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2555394.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.739707627350349 #Duplication Level Percentage of deduplicated Percentage of total 1 69.83848096568053 7.500448667096816 2 10.122233836953258 2.1741966388910137 3 4.401099822129466 1.417995759853623 4 2.437990522472697 1.0473322163843157 5 1.4844965878760248 0.7971529663793856 6 1.0248721927770341 0.6604096623496074 7 0.7020287085162816 0.5277708152829858 8 0.5126581068271704 0.44046385440918007 9 0.4255202774722391 0.41129670326047585 >10 4.578858705742445 12.199634751893287 >50 2.283248927599428 17.60114859025413 >100 2.0601573902473085 39.65233718376124 >500 0.09129939111238584 6.611266495071441 >1k 0.034380523849852414 5.972979191365374 >5k 0.0015280232822156626 1.2936825779511112 >10k+ 0.001146017461661747 1.6918839257960192 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGA 14226 0.5567047586399593 No Hit GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAA 13792 0.5397210762802135 No Hit GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13221 0.5173761854336356 No Hit GCTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 9664 0.37818042931931434 No Hit GCTGTGGGGGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8757 0.34268688116196566 No Hit GCTGTGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAA 7257 0.2839875181674529 No Hit GCTGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 5855 0.2291231802219149 No Hit GCTGTGGGGACAGTCTTGTTAGATTTACTTTCCGTGAAGAAGTAGCGCCT 4427 0.17324138665113872 No Hit GCTGTGGCCGGGGACTCCCGATTGCATTCACTCTTAACCAAGCTCCAATA 4090 0.16005359643170486 No Hit GCTGTGGGGATGTCATAAATAGTTAATTGACATTGAGTTGAAGCAGTCAT 3626 0.14189592681206892 No Hit GCTGTGGGGATGAATACACGGAAACAACTGTCATTTTCTTGTGTTATTTT 3517 0.13763043976780098 No Hit GCTGTGGGGATATTCCAAATTAACTAGGCCTATCTGGTTTCTTTCACTTG 3460 0.1353998639740095 No Hit GCTGTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 3307 0.1294125289485692 No Hit GCTGTGGGGGTGCAACACTGCAGTCATTGCTCCAGTTTAAATTACATGTG 3278 0.12827767459734193 No Hit GCTGTGGGGGGGGCTGGAGAGATGGCTCAGCACTTACGAGCACTGACTGC 3090 0.12092068776869633 No Hit GCTGTGGGGAGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAA 2917 0.11415069456999587 No Hit GCTGTGGGGGCTCTTTGGCCTCGCCGGTAGAAGCAAGATGACGAAGGGAA 2908 0.11379849839202878 No Hit GCTGTGGGGGCTGCTGTGGGGGTCTCTTTTATAACTTTACCTTTTAACTA 2793 0.1092982138957828 No Hit GCTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2775 0.10859382153984865 No Hit GCTGTGGGGGAGTGCAGTGCTGCTGTGGGAAAAAAAAAAAAAAAAAAAAA 2577 0.10084550562457295 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 6.652594472711449E-4 0.0 0.0 0.0 0.0 8 0.0017609808898353834 0.0 0.0 0.0 0.0 9 0.00794398045859073 0.0 0.0 0.0 0.0 10 0.04124608573081098 0.0 0.0 0.0 0.0 11 0.06856085597759093 0.0 0.0 0.0 0.0 12 0.08562280415466264 0.0 0.0 0.0 0.0 13 0.09755834129688025 0.0 0.0 0.0 0.0 14 0.1371999777725079 0.0 0.0 0.0 0.0 15 0.1566099004693601 0.0 0.0 0.0 0.0 16 0.18020704439315424 0.0 0.0 0.0 0.0 17 0.19425575860317432 0.0 0.0 0.0 0.0 18 0.20783487790923827 0.0 0.0 0.0 0.0 19 0.22697087024544943 0.0 0.0 0.0 0.0 20 0.24501114113909636 0.0 0.0 0.0 0.0 21 0.2623470196768091 0.0 0.0 0.0 0.0 22 0.28308746126820367 0.0 0.0 0.0 0.0 23 0.30781945954322504 0.0 0.0 0.0 0.0 24 0.3314166034670192 0.0 0.0 0.0 0.0 25 0.3503569312599153 0.0 0.0 0.0 0.0 26 0.37172349938991794 0.0 0.0 0.0 0.0 27 0.39195521316869336 0.0 0.0 0.0 0.0 28 0.47119935321128564 0.0 0.0 0.0 0.0 29 0.4908440733601159 0.0 0.0 0.0 0.0 30 0.5285290644025931 0.0 0.0 0.0 0.0 31 0.5547089802981459 0.0 0.0 0.0 0.0 32 0.5800671051117753 0.0 0.0 0.0 0.0 33 0.6042512426655146 0.0 0.0 0.0 0.0 34 0.6346575126966723 0.0 0.0 0.0 0.0 35 0.7650874972704796 0.0 0.0 0.0 0.0 36 0.7977634760040917 0.0 0.0 0.0 0.0 37 0.8271131575013482 0.0 0.0 0.0 0.0 38 0.8555236491906923 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGC 20 7.8582915E-4 44.000004 31 ATCCGAC 20 7.8582915E-4 44.000004 16 CGTAACC 20 7.8582915E-4 44.000004 12 TTACGCG 20 7.8582915E-4 44.000004 32 CGCGTTA 20 7.8582915E-4 44.000004 32 CCGTTAT 30 2.5289373E-6 44.000004 39 GCGTAAG 20 7.8582915E-4 44.000004 31 CGAACGT 25 4.444374E-5 44.0 38 GTCGATA 25 4.444374E-5 44.0 21 CGTCTAA 45 4.802132E-10 44.0 20 GTTACGC 25 4.444374E-5 44.0 32 CTACGCG 35 1.4470243E-7 44.0 25 CGTCGAT 35 1.4470243E-7 44.0 32 TATGTCG 45 4.802132E-10 44.0 11 CGCACGT 265 0.0 41.509434 25 AGTAGCG 495 0.0 40.88889 41 AATCACG 130 0.0 40.615383 39 GCGCATT 60 3.6379788E-12 40.333336 16 GCGTCTA 60 3.6379788E-12 40.333336 17 TGGGGAT 37605 0.0 40.121258 5 >>END_MODULE