SRR1527241_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527241_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2647085
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGAAG	14166	0.535154707914555	No Hit
GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAA	12311	0.4650776231212825	No Hit
GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11715	0.4425622902173523	No Hit
GCTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	8692	0.3283611973170487	No Hit
GCTGTGGGGGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6842	0.25847299954478226	No Hit
GCTGTGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAA	6656	0.2514464023633544	No Hit
GCTGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	4537	0.17139608286095837	No Hit
GCTGTGGGGACAGTCTTGTTAGATTTACTTTCCGTGAAGAAGTAGCGCCTCA	4095	0.1546984702040169	No Hit
GCTGTGGCCGGGGACTCCCGATTGCATTCACTCTTAACCAAGCTCCAATAAA	3852	0.14551856098311916	No Hit
GCTGTGGGGATGTCATAAATAGTTAATTGACATTGAGTTGAAGCAGTCATAC	3488	0.13176758585387321	No Hit
GCTGTGGGGGTGCAACACTGCAGTCATTGCTCCAGTTTAAATTACATGTGTG	3365	0.12712096513712254	No Hit
GCTGTGGGGATGAATACACGGAAACAACTGTCATTTTCTTGTGTTATTTTTT	3341	0.12621430743629314	No Hit
GCTGTGGGGATATTCCAAATTAACTAGGCCTATCTGGTTTCTTTCACTTGAA	3284	0.12406099539682329	No Hit
GCTGTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	3011	0.11374776404988883	No Hit
GCTGTGGGGAGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAA	2726	0.10298120385253969	No Hit
GCTGTGGGGGCTCTTTGGCCTCGCCGGTAGAAGCAAGATGACGAAGGGAACG	2687	0.10150788508869191	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGTAA	35	1.020253E-7	46.000004	29
TACGACG	30	1.8623305E-6	46.0	27
ACGTACG	20	6.312952E-4	46.0	33
CGACTCG	20	6.312952E-4	46.0	19
TCGCGAC	20	6.312952E-4	46.0	20
TACGTCG	25	3.4183722E-5	46.0	44
CGACCGT	65	0.0	42.46154	15
TGGGGAT	37460	0.0	42.24239	5
CGATACC	105	0.0	41.619045	20
ATTATCG	50	8.731149E-10	41.399998	44
CGTCATA	50	8.731149E-10	41.399998	43
CGACGTA	45	1.5897967E-8	40.88889	30
AGTAGCG	605	0.0	40.29752	41
AACCGAT	40	2.912493E-7	40.25	36
CCGATAA	40	2.912493E-7	40.25	44
CGATACG	40	2.912493E-7	40.25	24
TGGGGAC	16390	0.0	40.106167	5
GATATTC	655	0.0	39.67939	9
GTCGTAC	145	0.0	39.65517	25
AACGTCG	35	5.3757667E-6	39.428574	35