##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527241_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2647085 Sequences flagged as poor quality 0 Sequence length 52 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14519329753295 33.0 31.0 34.0 30.0 34.0 2 32.5260461979876 34.0 31.0 34.0 31.0 34.0 3 32.65248339210868 34.0 31.0 34.0 31.0 34.0 4 36.29641511322833 37.0 37.0 37.0 35.0 37.0 5 35.23300951801699 35.0 35.0 37.0 33.0 37.0 6 35.97824852620902 37.0 35.0 37.0 35.0 37.0 7 36.564976568565044 37.0 37.0 37.0 35.0 37.0 8 36.62866398321172 37.0 37.0 37.0 35.0 37.0 9 38.48815243938143 39.0 39.0 39.0 37.0 39.0 10 37.7576791073955 39.0 37.0 39.0 35.0 39.0 11 37.06582448240234 39.0 37.0 39.0 34.0 39.0 12 37.117901389641816 39.0 37.0 39.0 34.0 39.0 13 36.96314474223533 39.0 37.0 39.0 33.0 39.0 14 37.87986936573627 40.0 37.0 40.0 33.0 40.0 15 38.00921693107701 40.0 38.0 40.0 34.0 40.0 16 37.93916704601477 40.0 37.0 40.0 34.0 40.0 17 37.863532905063494 40.0 37.0 40.0 34.0 40.0 18 37.95759259713987 40.0 38.0 40.0 34.0 40.0 19 37.780810967535984 40.0 37.0 40.0 34.0 40.0 20 37.93840772019032 40.0 38.0 40.0 34.0 40.0 21 33.69880415627001 39.0 34.0 40.0 10.0 40.0 22 34.32346222354023 39.0 34.0 40.0 16.0 40.0 23 36.28684005235948 39.0 34.0 40.0 30.0 40.0 24 37.10114257759007 39.0 36.0 40.0 32.0 40.0 25 37.32510176288257 39.0 36.0 40.0 33.0 40.0 26 37.3421779051296 39.0 36.0 40.0 33.0 40.0 27 37.38181093542519 40.0 36.0 40.0 33.0 40.0 28 37.319582484128766 40.0 36.0 40.0 33.0 40.0 29 37.305601066833894 40.0 36.0 40.0 33.0 40.0 30 37.13026140074837 39.0 35.0 40.0 33.0 40.0 31 36.929686428656424 39.0 35.0 40.0 32.0 40.0 32 36.72293560652567 39.0 35.0 40.0 32.0 40.0 33 36.42132081138309 39.0 35.0 40.0 31.0 40.0 34 36.210887825664834 39.0 35.0 40.0 30.0 40.0 35 36.29887442224182 39.0 35.0 40.0 30.0 40.0 36 36.188397425847675 39.0 35.0 40.0 30.0 40.0 37 35.9587096749821 38.0 35.0 40.0 30.0 40.0 38 35.86432849719597 38.0 35.0 40.0 30.0 40.0 39 35.69000239886517 38.0 35.0 40.0 30.0 40.0 40 30.806650334235584 36.0 29.0 40.0 8.0 40.0 41 31.699540437877893 36.0 29.0 40.0 13.0 40.0 42 33.35914109293808 35.0 30.0 40.0 22.0 40.0 43 34.15895522810941 36.0 33.0 40.0 25.0 40.0 44 34.84896367135925 37.0 34.0 40.0 27.0 40.0 45 34.93769221615475 37.0 34.0 40.0 27.0 40.0 46 34.915276993371954 37.0 34.0 40.0 26.0 40.0 47 34.8532083404953 37.0 34.0 40.0 26.0 40.0 48 34.688651856664976 37.0 34.0 40.0 26.0 40.0 49 34.4973006155828 36.0 34.0 40.0 25.0 40.0 50 34.26858298845711 36.0 34.0 40.0 24.0 40.0 51 34.05555205065194 36.0 34.0 40.0 23.0 40.0 52 33.63077951784699 35.0 33.0 40.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 13.0 15 39.0 16 93.0 17 240.0 18 483.0 19 1000.0 20 1894.0 21 3427.0 22 5559.0 23 8531.0 24 12360.0 25 18131.0 26 25902.0 27 35996.0 28 44134.0 29 53541.0 30 61642.0 31 77553.0 32 100978.0 33 123778.0 34 223274.0 35 257614.0 36 328393.0 37 350873.0 38 615387.0 39 296249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 0.0 100.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 100.0 0.0 0.0 0.0 7 99.19394352655846 0.4812463521194068 0.26776624097828366 0.05704388034384994 8 98.51814354280273 0.7547169811320755 0.3310056156111345 0.39613386045404664 9 92.73986290580015 3.434759367379589 2.022148892083178 1.8032288347370786 10 41.07892266398699 42.535430482965225 6.753390994244612 9.632255858803173 11 25.043056796438346 25.5906402703351 28.33856865193222 21.02773428129433 12 32.802271177540575 16.765158655653295 30.5551578434391 19.877412323367025 13 28.180205773520683 16.58004937506729 29.329809960768166 25.90993489064386 14 23.829306576857185 22.898773556572607 28.02807616680235 25.243843699767858 15 27.25473492539907 20.90318217964289 30.615601690161064 21.226481204796972 16 30.400912702085503 23.24844120985915 28.605806009251687 17.744840078803666 17 31.038104178747567 21.402977237225098 29.29955026000298 18.259368324024354 18 33.457935804857044 20.51241271058542 26.335799568204273 19.69385191635327 19 29.98181017987711 21.77553799745758 28.753628991891077 19.489022830774232 20 30.408997066584565 24.174932047894192 25.30440087870242 20.111670006818823 21 33.65619162210507 21.138837627050133 28.072577948951395 17.132392801893403 22 27.270563657759382 23.30831839551809 25.780320616829457 23.640797329893072 23 23.27450761875799 28.166908127241854 27.31695431011849 21.241629943881666 24 25.38770005496612 26.712138068856873 28.084628940891587 19.815532935285418 25 26.476293734428623 24.621083191510664 25.378520145745227 23.52410292831549 26 27.436822013648975 26.634392171010752 26.000638438131002 19.92814737720927 27 25.334811689084408 24.3848233056362 25.695774786227116 24.584590219052277 28 25.745036521305508 28.697945098098476 24.90105153404594 20.655966846550072 29 29.95653709646649 25.925763623004173 23.841017572159565 20.27668170836977 30 26.43009196909053 29.0133108683703 24.56494596886764 19.99165119367153 31 27.560203015770178 27.611580285483843 24.433442824843176 20.394773873902803 32 24.907889244206363 28.66723206848288 26.961846710626975 19.463031976683787 33 28.17064809025777 27.60508257196123 24.50695765341876 19.717311684362233 34 22.610947513963474 30.0031166358466 26.268971340172303 21.116964510017624 35 21.740253901933638 33.67145369340236 26.60957241645055 17.97871998821345 36 24.794481476794285 33.010009123243115 25.11351165527363 17.08199774468897 37 24.563888201550007 31.432840275246164 25.31018082154521 18.693090701658615 38 24.473449095892274 32.04770530602531 24.412665252532502 19.066180345549917 39 23.882383829759906 31.073010500229497 23.802257955449107 21.24234771456149 40 24.80449248890761 33.95467089269895 23.11569141149604 18.125145206897397 41 23.346738015590734 32.014310080711425 23.813175625263263 20.825776278434578 42 21.48389643702412 31.247882104276968 23.39101313331457 23.877208325384338 43 22.11345687803754 30.366724151283393 25.647419708849544 21.87239926182952 44 23.202730550775666 31.0144177463134 24.31368845352529 21.469163249385645 45 22.676075758806384 31.616400682259922 24.972224163561048 20.735299395372646 46 24.320903937727728 32.84061524280482 23.443183728516463 19.39529709095099 47 23.560558123369667 30.799124319770616 24.41224970108629 21.22806785577343 48 24.08596626100031 30.62005942385681 25.007054930234577 20.286919384908305 49 24.614963252030066 32.014725632157635 24.266240033848554 19.104071081963745 50 21.86000827325152 32.65040601265165 25.033461335771236 20.45612437832559 51 20.642442535846033 33.27705759354158 25.62101330331289 20.4594865672995 52 22.698213317668305 32.29499619392653 24.38353887389336 20.623251614511812 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 14.5 8 29.0 9 101.5 10 174.0 11 1525.5 12 2877.0 13 8868.5 14 12110.5 15 9361.0 16 10895.5 17 12430.0 18 12353.0 19 12276.0 20 12546.5 21 12817.0 22 13508.0 23 14199.0 24 14293.0 25 14387.0 26 16197.5 27 18008.0 28 22930.0 29 27852.0 30 36010.0 31 44168.0 32 45883.0 33 47598.0 34 55431.5 35 63265.0 36 73189.5 37 83114.0 38 92509.0 39 110538.0 40 119172.0 41 106662.5 42 94153.0 43 95619.0 44 97085.0 45 100439.0 46 103793.0 47 106538.0 48 109283.0 49 113735.5 50 118188.0 51 125632.5 52 133077.0 53 133903.0 54 134729.0 55 145865.5 56 157002.0 57 160067.5 58 163133.0 59 172683.5 60 182234.0 61 182933.5 62 183633.0 63 172860.0 64 153241.5 65 144396.0 66 125825.5 67 107255.0 68 85568.5 69 63882.0 70 51607.5 71 39333.0 72 30498.5 73 21664.0 74 18861.5 75 16059.0 76 13398.0 77 10737.0 78 7476.5 79 4216.0 80 2779.5 81 1343.0 82 993.5 83 644.0 84 534.5 85 425.0 86 310.5 87 196.0 88 107.0 89 13.5 90 9.0 91 8.0 92 7.0 93 6.0 94 5.0 95 6.5 96 8.0 97 4.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2647085.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.07165699964811 #Duplication Level Percentage of deduplicated Percentage of total 1 72.49603937079155 9.476433604879722 2 9.742711734972406 2.5470677209201162 3 4.0607294569143795 1.5924138788745632 4 2.2216341678301257 1.1616175928229624 5 1.3429637412521953 0.8777380694306437 6 0.8949562539620707 0.7019136708889292 7 0.6187002965109042 0.5661206643099784 8 0.4493763272783633 0.4699274571155501 9 0.36631641025679634 0.43095262213972974 >10 4.151364202579862 13.592398800424437 >50 1.9867521613182837 18.575999683030776 >100 1.575075898500386 36.31442971900201 >500 0.06894722377616735 6.077473827227259 >1k 0.022424582490306856 4.973787115116354 >5k 0.0010040857831480681 0.9708173045443759 >10k+ 0.0010040857831480681 1.6709082692725912 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGAAG 14166 0.535154707914555 No Hit GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAA 12311 0.4650776231212825 No Hit GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 11715 0.4425622902173523 No Hit GCTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 8692 0.3283611973170487 No Hit GCTGTGGGGGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6842 0.25847299954478226 No Hit GCTGTGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAA 6656 0.2514464023633544 No Hit GCTGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 4537 0.17139608286095837 No Hit GCTGTGGGGACAGTCTTGTTAGATTTACTTTCCGTGAAGAAGTAGCGCCTCA 4095 0.1546984702040169 No Hit GCTGTGGCCGGGGACTCCCGATTGCATTCACTCTTAACCAAGCTCCAATAAA 3852 0.14551856098311916 No Hit GCTGTGGGGATGTCATAAATAGTTAATTGACATTGAGTTGAAGCAGTCATAC 3488 0.13176758585387321 No Hit GCTGTGGGGGTGCAACACTGCAGTCATTGCTCCAGTTTAAATTACATGTGTG 3365 0.12712096513712254 No Hit GCTGTGGGGATGAATACACGGAAACAACTGTCATTTTCTTGTGTTATTTTTT 3341 0.12621430743629314 No Hit GCTGTGGGGATATTCCAAATTAACTAGGCCTATCTGGTTTCTTTCACTTGAA 3284 0.12406099539682329 No Hit GCTGTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 3011 0.11374776404988883 No Hit GCTGTGGGGAGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAA 2726 0.10298120385253969 No Hit GCTGTGGGGGCTCTTTGGCCTCGCCGGTAGAAGCAAGATGACGAAGGGAACG 2687 0.10150788508869191 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 7.177706798232773E-4 0.0 0.0 0.0 0.0 8 0.0016244283806526802 0.0 0.0 0.0 0.0 9 0.007177706798232773 0.0 0.0 0.0 0.0 10 0.040837373941524355 0.0 0.0 0.0 0.0 11 0.06671489581936356 0.0 0.0 0.0 0.0 12 0.08424361136873203 0.0 0.0 0.0 0.0 13 0.0942924008862579 0.0 0.0 0.0 0.0 14 0.13089870555724503 0.0 0.0 0.0 0.0 15 0.1484274211066135 0.0 0.0 0.0 0.0 16 0.1715471924777633 0.0 0.0 0.0 0.0 17 0.1836359618221553 0.0 0.0 0.0 0.0 18 0.19614028261276084 0.0 0.0 0.0 0.0 19 0.21162901833526312 0.0 0.0 0.0 0.0 20 0.22945995311824138 0.0 0.0 0.0 0.0 21 0.2464597850087927 0.0 0.0 0.0 0.0 22 0.2678417957866861 0.0 0.0 0.0 0.0 23 0.29186822485866526 0.0 0.0 0.0 0.0 24 0.3157813217180408 0.0 0.0 0.0 0.0 25 0.3335744790968178 0.0 0.0 0.0 0.0 26 0.35182096532600954 0.0 0.0 0.0 0.0 27 0.3722963184030736 0.0 0.0 0.0 0.0 28 0.4513644253962377 0.0 0.0 0.0 0.0 29 0.46987535345483805 0.0 0.0 0.0 0.0 30 0.5042150138737517 0.0 0.0 0.0 0.0 31 0.5273725626491027 0.0 0.0 0.0 0.0 32 0.5500390051698377 0.0 0.0 0.0 0.0 33 0.573725437604006 0.0 0.0 0.0 0.0 34 0.5998296239070525 0.0 0.0 0.0 0.0 35 0.7096107605158126 0.0 0.0 0.0 0.0 36 0.7414571122574455 0.0 0.0 0.0 0.0 37 0.7649168802664063 0.0 0.0 0.0 0.0 38 0.7906810699316418 0.0 0.0 0.0 0.0 39 0.8152741600666393 0.0 0.0 0.0 0.0 40 0.8453827512150157 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGTAA 35 1.020253E-7 46.000004 29 TACGACG 30 1.8623305E-6 46.0 27 ACGTACG 20 6.312952E-4 46.0 33 CGACTCG 20 6.312952E-4 46.0 19 TCGCGAC 20 6.312952E-4 46.0 20 TACGTCG 25 3.4183722E-5 46.0 44 CGACCGT 65 0.0 42.46154 15 TGGGGAT 37460 0.0 42.24239 5 CGATACC 105 0.0 41.619045 20 ATTATCG 50 8.731149E-10 41.399998 44 CGTCATA 50 8.731149E-10 41.399998 43 CGACGTA 45 1.5897967E-8 40.88889 30 AGTAGCG 605 0.0 40.29752 41 AACCGAT 40 2.912493E-7 40.25 36 CCGATAA 40 2.912493E-7 40.25 44 CGATACG 40 2.912493E-7 40.25 24 TGGGGAC 16390 0.0 40.106167 5 GATATTC 655 0.0 39.67939 9 GTCGTAC 145 0.0 39.65517 25 AACGTCG 35 5.3757667E-6 39.428574 35 >>END_MODULE