##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527185_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2557721 Sequences flagged as poor quality 0 Sequence length 52 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61382574565404 34.0 31.0 34.0 31.0 34.0 2 32.8153410790309 34.0 31.0 34.0 31.0 34.0 3 32.94644529250845 34.0 31.0 34.0 31.0 34.0 4 36.462843679979166 37.0 37.0 37.0 35.0 37.0 5 36.32118475783715 37.0 37.0 37.0 35.0 37.0 6 36.50340127011508 37.0 37.0 37.0 35.0 37.0 7 36.5512501168032 37.0 37.0 37.0 35.0 37.0 8 36.64123334796876 37.0 37.0 37.0 35.0 37.0 9 38.720593841157815 39.0 39.0 39.0 39.0 39.0 10 38.1536492838742 39.0 39.0 39.0 37.0 39.0 11 37.926268736895075 39.0 38.0 39.0 35.0 39.0 12 37.52865148309765 39.0 37.0 39.0 35.0 39.0 13 37.465318930407186 39.0 37.0 39.0 35.0 39.0 14 38.324798521809065 40.0 38.0 40.0 35.0 40.0 15 38.207759173107625 40.0 38.0 40.0 35.0 40.0 16 33.07477633408804 40.0 35.0 40.0 3.0 40.0 17 34.7940346112809 40.0 35.0 40.0 17.0 40.0 18 36.875169340205595 40.0 35.0 40.0 32.0 40.0 19 37.7198580298633 40.0 37.0 40.0 34.0 40.0 20 37.98538660002401 40.0 38.0 40.0 34.0 40.0 21 38.18118434340571 40.0 38.0 40.0 34.0 40.0 22 38.2423884387703 40.0 38.0 40.0 34.0 40.0 23 38.22410888443267 40.0 38.0 40.0 35.0 40.0 24 38.203971035151994 40.0 38.0 40.0 35.0 40.0 25 38.16003661071712 40.0 38.0 40.0 35.0 40.0 26 38.05742494978929 40.0 38.0 40.0 34.0 40.0 27 37.95711572919799 40.0 38.0 40.0 34.0 40.0 28 37.86237787467828 40.0 37.0 40.0 34.0 40.0 29 37.66267939310034 40.0 37.0 40.0 34.0 40.0 30 37.65347940608065 40.0 37.0 40.0 33.0 40.0 31 37.61141735161888 40.0 37.0 40.0 33.0 40.0 32 37.51044660461403 40.0 36.0 40.0 33.0 40.0 33 37.147944986963005 40.0 36.0 40.0 33.0 40.0 34 37.078487059378254 40.0 36.0 40.0 32.0 40.0 35 37.020958501728686 40.0 35.0 40.0 32.0 40.0 36 37.03213368463566 39.0 35.0 40.0 32.0 40.0 37 36.72438901662848 39.0 35.0 40.0 31.0 40.0 38 36.73814735852738 39.0 35.0 40.0 31.0 40.0 39 36.37414166752355 39.0 35.0 40.0 31.0 40.0 40 36.365528922036454 39.0 35.0 40.0 30.0 40.0 41 36.33487976210071 39.0 35.0 40.0 31.0 40.0 42 36.28169882485228 38.0 35.0 40.0 31.0 40.0 43 36.2108275296641 38.0 35.0 40.0 31.0 40.0 44 36.41788725197158 39.0 35.0 40.0 31.0 40.0 45 36.45343843210421 39.0 35.0 40.0 31.0 40.0 46 36.401489059987384 39.0 35.0 40.0 31.0 40.0 47 36.06645642742113 38.0 35.0 40.0 31.0 40.0 48 36.03995431870794 38.0 35.0 40.0 31.0 40.0 49 35.97540857661958 38.0 35.0 40.0 31.0 40.0 50 35.452143920310306 37.0 35.0 40.0 29.0 40.0 51 35.53469201683843 37.0 35.0 40.0 30.0 40.0 52 35.20841874465589 37.0 34.0 40.0 29.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 7.0 14 20.0 15 10.0 16 43.0 17 89.0 18 248.0 19 442.0 20 815.0 21 1434.0 22 2445.0 23 3860.0 24 5779.0 25 8583.0 26 11724.0 27 16261.0 28 22380.0 29 29520.0 30 38225.0 31 48802.0 32 64925.0 33 98204.0 34 144579.0 35 206602.0 36 264411.0 37 483322.0 38 668459.0 39 436532.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 0.0 0.0 100.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 0.0 100.0 5 0.0 0.0 100.0 0.0 6 0.0 0.0 100.0 0.0 7 99.69058392217134 0.22946208753808567 0.05547907688133303 0.024474913409242054 8 99.57329200487465 0.31242657037260907 0.07045334498954343 0.043828079763195436 9 97.5999727882752 1.3229746324951002 0.4134540084708223 0.6635985707588905 10 49.86747968210762 37.42847636626512 5.105404381478667 7.598639570148581 11 34.20361329480424 22.199098337934434 23.962308633349767 19.634979733911557 12 30.346624983725746 15.516391349955683 27.82918856278695 26.30779510353162 13 23.830159739862168 17.228266882900833 30.0554673476896 28.8861060295474 14 24.56597103437005 18.486613668965457 30.877097228352895 26.070318068311593 15 26.696109544395185 18.79759363902474 28.823042075347544 25.683254741232524 16 29.313595970788057 27.495258474243283 22.728319468777087 20.462826086191573 17 31.63374738683383 20.589735940706593 23.085043286582078 24.691473385877504 18 29.323643978369805 19.82518812646102 24.849621987699205 26.001545907469968 19 29.18797632736331 20.161698637185214 25.107664205751917 25.542660829699564 20 26.866495602921507 21.903757290181378 25.972770290426517 25.2569768164706 21 28.912144835187263 20.368288800850447 26.56380426168452 24.15576210227777 22 28.674589605355706 19.297452693237457 26.021563728021942 26.0063939733849 23 28.42186462088711 21.022777699365957 24.990294093843698 25.565063585903232 24 28.4871571215156 21.201765165160705 24.96718758613625 25.343890127187446 25 27.28522774767068 20.24861194790206 24.531760891825183 27.93439941260208 26 27.291717900427763 19.81643032996953 25.14871637680576 27.743135392796948 27 26.822706620464075 18.58732832861755 24.508771676035032 30.08119337488334 28 28.48528045083885 22.057996161426523 22.45139325203961 27.005330135695022 29 30.243486291116195 21.088969438027057 23.757047778080565 24.910496492776186 30 29.336311505437852 20.526711083812504 23.447279824500015 26.689697586249633 31 31.262792149730167 20.937701962020093 23.228569496047456 24.570936392202277 32 32.51382773961664 20.36015656125121 23.376005436089393 23.750010263042764 33 31.641840529127297 20.657296085069483 24.810602876545175 22.890260509258045 34 28.33737534312773 22.670338164326758 25.610494655202814 23.381791837342696 35 27.162384012955282 25.73533235251226 25.408635265535217 21.693648368997245 36 28.188180024326343 25.352374242538573 23.021040997043855 23.438404736091233 37 28.96469161413618 26.02074268460086 21.950713154405815 23.063852546857145 38 30.749014454664913 25.10801608150381 21.817078563299123 22.32589090053215 39 29.783389196867056 23.44325280200616 21.78583981599244 24.987518185134345 40 28.07604895139071 23.65637221573424 22.52309771081365 25.744481122061398 41 24.240094990814086 24.26941797013826 23.994055645631406 27.49643139341625 42 24.457554205482147 22.399081056925287 23.80943816780642 29.33392656978615 43 25.577457431830915 21.56951442319158 25.093393689147486 27.759634455830014 44 26.008739811730834 20.55943552873828 25.4622376717398 27.969586987791082 45 26.946097717460194 21.874317018939905 25.092729034949475 26.08685622865043 46 26.917713073474392 22.494595774910557 24.328103026092368 26.259588125522683 47 26.14804351217353 22.67295768381305 24.87010897592036 26.308889828093058 48 27.16171935875727 21.634181366927823 25.335484206447852 25.868615067867058 49 26.966584705681345 21.831270885292025 25.41207582844259 25.79006858058404 50 25.19211438620553 23.15788156722332 24.844852116395806 26.80515193017534 51 24.28353209751963 23.227474771486023 25.40542928646244 27.08356384453191 52 26.116765667561083 21.86407352482933 25.776423620871864 26.242737186737724 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 26.0 6 50.0 7 32.0 8 14.0 9 564.5 10 1115.0 11 2171.5 12 3228.0 13 4690.5 14 5775.5 15 5398.0 16 5330.0 17 5262.0 18 5621.0 19 5980.0 20 5878.0 21 5776.0 22 7883.5 23 9991.0 24 10229.0 25 10467.0 26 13491.5 27 16516.0 28 16957.0 29 17398.0 30 21448.0 31 25498.0 32 28454.0 33 31410.0 34 32496.0 35 33582.0 36 40907.5 37 48233.0 38 52192.0 39 60289.0 40 64427.0 41 66966.0 42 69505.0 43 76160.5 44 82816.0 45 89017.0 46 95218.0 47 97328.0 48 99438.0 49 110326.5 50 121215.0 51 134825.5 52 148436.0 53 162639.0 54 176842.0 55 198303.0 56 219764.0 57 238514.5 58 257265.0 59 245142.0 60 233019.0 61 217660.0 62 202301.0 63 175349.0 64 131093.0 65 113789.0 66 94771.5 67 75754.0 68 67667.5 69 59581.0 70 50889.0 71 42197.0 72 39680.5 73 37164.0 74 27139.5 75 17115.0 76 12532.5 77 7950.0 78 5035.5 79 2121.0 80 1571.0 81 1021.0 82 566.0 83 111.0 84 67.5 85 24.0 86 16.5 87 9.0 88 6.5 89 5.5 90 7.0 91 7.0 92 7.0 93 3.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2557721.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.068099092294371 #Duplication Level Percentage of deduplicated Percentage of total 1 68.87479670229246 5.5568868475572515 2 10.39151483679011 1.6767954284453959 3 4.514262660309943 1.0926455541607507 4 2.3146695187427784 0.7469993217252024 5 1.3450684899003174 0.5426072931219256 6 0.8092275191366393 0.3917356687563568 7 0.5492384080448671 0.3101916930979999 8 0.4027246816035672 0.25993781104722247 9 0.31101475991462424 0.22583681119415985 >10 4.006628562152943 8.708642361492558 >50 3.157425340780516 18.616235944914433 >100 3.1299450847061614 44.785660199588214 >500 0.13347552950368508 7.127815259379193 >1k 0.056082155253649194 7.408531609188997 >5k 0.0033649293152189516 1.8968262573141148 >10k+ 5.608215525364919E-4 0.652651939016216 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCACTTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 14424 0.5639395383624719 No Hit TCACTTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 8616 0.3368623864760856 No Hit TCACTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 8236 0.3220054102851718 No Hit TCACTTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTCACTTGGGAAG 7528 0.29432451780315366 No Hit TCACTTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT 6827 0.2669173064614944 No Hit TCACTTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 5690 0.22246366980604998 No Hit TCACTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT 5024 0.19642486416618543 No Hit TCACTTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGG 4940 0.1931406904818782 No Hit TCACTTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 4644 0.18156788797527174 No Hit TCACTTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 4508 0.17625065439115525 No Hit TCACTTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 4398 0.1719499507569434 No Hit TCACTTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 4087 0.1597906886638535 No Hit TCACTTGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 3650 0.14270516604430272 No Hit TCACTTGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCT 3491 0.1364886944275783 No Hit TCACTTGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCAT 3419 0.1336736884124578 No Hit TCACTTGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCT 3018 0.1179956688004673 No Hit TCACTTGGGACATTTTGTTTTTGAGACTGTATTCCCTAGCATATATCTCCTA 2768 0.10822134235907668 No Hit TCACTTGGGAGGACGTGTTTATATTGAGTCACATTCAAGACCTGGGCTGGCC 2704 0.1057191147900807 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 1.5638922306224955E-4 0.0 0.0 0.0 0.0 9 2.736811403589367E-4 0.0 0.0 0.0 0.0 10 0.0057864012533032335 0.0 0.0 0.0 0.0 11 0.012667527068042214 0.0 0.0 0.0 0.0 12 0.017202814536847452 0.0 0.0 0.0 0.0 13 0.02173810200565269 0.0 0.0 0.0 0.0 14 0.036868759336925336 0.0 0.0 0.0 0.0 15 0.04461002587850669 0.0 0.0 0.0 0.0 16 0.060288045490497204 0.0 0.0 0.0 0.0 17 0.06720826861100175 0.0 0.0 0.0 0.0 18 0.07346383753349173 0.0 0.0 0.0 0.0 19 0.08249531516533665 0.0 0.0 0.0 0.0 20 0.09148769549141599 0.0 0.0 0.0 0.0 21 0.10415522255945821 0.0 0.0 0.0 0.0 22 0.11260024060481968 0.0 0.0 0.0 0.0 23 0.12127984248477452 0.0 0.0 0.0 0.0 24 0.1352375806430803 0.0 0.0 0.0 0.0 25 0.1407503007560246 0.0 0.0 0.0 0.0 26 0.14868705382643377 0.0 0.0 0.0 0.0 27 0.15595915269882837 0.0 0.0 0.0 0.0 28 0.17429578910287713 0.0 0.0 0.0 0.0 29 0.18082503916572604 0.0 0.0 0.0 0.0 30 0.19110763058206895 0.0 0.0 0.0 0.0 31 0.19951355132166487 0.0 0.0 0.0 0.0 32 0.2087405154823376 0.0 0.0 0.0 0.0 33 0.21702914430463682 0.0 0.0 0.0 0.0 34 0.22594333001918504 0.0 0.0 0.0 0.0 35 0.25432797400498336 0.0 0.0 0.0 0.0 36 0.2667609172384322 0.0 0.0 0.0 0.0 37 0.27770816285278965 0.0 0.0 0.0 0.0 38 0.2868569324019313 0.0 0.0 0.0 0.0 39 0.2971004265125086 0.0 0.0 0.0 0.0 40 0.3064837798962436 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAC 35 1.0202348E-7 46.000004 34 CGATGTA 35 1.0202348E-7 46.000004 40 AAACGAC 40 5.6152203E-9 46.0 36 ACGATAC 20 6.312913E-4 46.0 45 CGTACTA 20 6.312913E-4 46.0 23 CGATAGT 25 3.4183395E-5 46.0 19 ACGAATT 25 3.4183395E-5 46.0 28 TTGGGAT 28930 0.0 43.718285 5 TTGGGAC 17550 0.0 43.20855 5 TCACTTG 272725 0.0 43.013733 1 CTTGGGA 99660 0.0 42.949028 4 CACTTGG 272170 0.0 42.925674 2 ACTTGGG 267195 0.0 42.753944 3 TTGGGAG 35130 0.0 42.660973 5 CTTGGGG 135360 0.0 42.513298 4 TAAGGCG 65 0.0 42.46154 32 TGGGATA 3300 0.0 42.166664 6 TGGGATT 11460 0.0 42.126526 6 TTGGGGC 29420 0.0 42.07546 5 TTGGGGG 49260 0.0 41.797806 5 >>END_MODULE