##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527174_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2549095 Sequences flagged as poor quality 0 Sequence length 50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.578615940167 34.0 31.0 34.0 31.0 34.0 2 32.86848155914158 34.0 31.0 34.0 31.0 34.0 3 33.01578207167642 34.0 31.0 34.0 31.0 34.0 4 36.51994492162905 37.0 37.0 37.0 35.0 37.0 5 36.35041926644554 37.0 37.0 37.0 35.0 37.0 6 36.256434538532304 37.0 37.0 37.0 35.0 37.0 7 36.607993032821454 37.0 37.0 37.0 35.0 37.0 8 36.66531965266104 37.0 37.0 37.0 35.0 37.0 9 38.72164513288049 39.0 39.0 39.0 39.0 39.0 10 38.17558662976468 39.0 39.0 39.0 37.0 39.0 11 36.72018736061229 38.0 35.0 39.0 33.0 39.0 12 36.52806074312648 39.0 35.0 39.0 33.0 39.0 13 36.44479746733645 38.0 35.0 39.0 33.0 39.0 14 37.051978054956756 39.0 35.0 40.0 33.0 40.0 15 37.02558123569345 39.0 35.0 40.0 33.0 40.0 16 36.92013008538324 39.0 35.0 40.0 33.0 40.0 17 36.65041671652096 39.0 35.0 40.0 31.0 40.0 18 36.58035891169219 39.0 35.0 40.0 31.0 40.0 19 36.51456654224342 39.0 34.0 40.0 31.0 40.0 20 36.35576783132837 39.0 34.0 40.0 31.0 40.0 21 36.66897859828684 39.0 35.0 40.0 31.0 40.0 22 36.572717376166835 39.0 35.0 40.0 31.0 40.0 23 36.78512570147444 39.0 35.0 40.0 32.0 40.0 24 36.96497188217779 39.0 35.0 40.0 33.0 40.0 25 36.95974414449049 39.0 35.0 40.0 33.0 40.0 26 36.78451293498281 38.0 35.0 40.0 33.0 40.0 27 36.715172247405455 38.0 35.0 40.0 33.0 40.0 28 36.52925646160696 38.0 35.0 40.0 32.0 40.0 29 36.75829578732844 39.0 35.0 40.0 33.0 40.0 30 36.697940249382626 39.0 35.0 40.0 32.0 40.0 31 36.679362283477076 39.0 35.0 40.0 33.0 40.0 32 36.02461344124091 38.0 35.0 40.0 31.0 40.0 33 36.201460518340824 38.0 35.0 40.0 31.0 40.0 34 35.852213824906485 38.0 34.0 40.0 30.0 40.0 35 35.934654063500965 38.0 34.0 40.0 30.0 40.0 36 36.02371351401184 38.0 35.0 40.0 31.0 40.0 37 36.22247817362633 38.0 35.0 40.0 32.0 40.0 38 36.108065019153855 38.0 35.0 40.0 32.0 40.0 39 36.09971225081843 38.0 35.0 40.0 32.0 40.0 40 36.0462936846214 37.0 35.0 40.0 31.0 40.0 41 35.948092166043246 37.0 35.0 40.0 31.0 40.0 42 35.857652617889876 37.0 35.0 40.0 31.0 40.0 43 35.80619631673202 37.0 35.0 40.0 31.0 40.0 44 35.70113942399165 36.0 35.0 40.0 31.0 40.0 45 35.57553092371999 36.0 35.0 40.0 31.0 40.0 46 35.246319183867215 36.0 35.0 40.0 30.0 40.0 47 35.190401299284645 35.0 35.0 40.0 30.0 40.0 48 35.11815369768487 35.0 34.0 40.0 30.0 40.0 49 34.88830231905833 35.0 34.0 40.0 29.0 40.0 50 34.61129812737462 35.0 34.0 39.0 28.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 6.0 14 6.0 15 41.0 16 153.0 17 348.0 18 680.0 19 1253.0 20 1824.0 21 2840.0 22 4254.0 23 6032.0 24 8585.0 25 11802.0 26 15671.0 27 20565.0 28 27091.0 29 35501.0 30 47404.0 31 63450.0 32 85214.0 33 132801.0 34 351509.0 35 255894.0 36 160881.0 37 271352.0 38 626525.0 39 417409.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 0.0 0.0 100.0 3 0.0 100.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 99.30602821785772 0.6393641664983063 0.03711121005690255 0.017496405587080908 8 99.45874908545974 0.4512581916327167 0.054058401118828446 0.035934321788713246 9 97.60342396026826 1.2306720620455494 0.5862080463850896 0.5796959313011089 10 55.848252026699676 31.740009689713407 4.537728095657478 7.874010187929442 11 43.690093935298606 16.87873539432622 22.12699016709852 17.304180503276655 12 41.56694826987617 13.262079286962628 23.932925214635 21.238047228526202 13 30.20126750866484 13.054240818800396 26.29921599626534 30.445275676269425 14 23.261078931934666 16.068251673633192 35.365139392607965 25.305530001824177 15 30.76193707963022 16.688314872533194 31.69156112267295 20.858186925163636 16 39.191987744670165 18.897138003879807 24.877534968292668 17.033339283157357 17 33.05361314505736 21.448474850878448 25.679505863845797 19.818406140218393 18 33.14533197075825 21.774119834686427 25.621995257140277 19.458552937415043 19 29.4798350002648 28.898452195779285 23.045786838073905 18.57592596588201 20 32.48399922325375 26.113346109109308 24.084155357097323 17.31849931053962 21 29.855262357817185 27.788803477312534 24.30764643922647 18.048287725643807 22 25.649926738705304 23.70264741015929 32.47838938917537 18.16903646196003 23 31.027639220978426 20.536072606160225 29.899905652790498 18.53638252007085 24 36.9714349602506 19.451020852498633 24.39367697163111 19.18386721561966 25 30.01806523491671 19.421088660877682 21.588759932446614 28.972086171759 26 23.40387470847497 20.308776251963934 28.962474917568787 27.324874121992316 27 20.681810603371 17.87657972731499 28.919675414215636 32.52193425509838 28 20.662391946945878 27.212716670033878 24.67475711968365 27.450134263336594 29 31.0660057785214 25.25068700852656 21.532661591662926 22.150645621289126 30 29.383918606407374 20.38162563576485 28.580535444932416 21.653920312895362 31 33.46505328361634 19.118706835170915 26.771893554379105 20.64434632683364 32 37.422026248531346 19.042012949693913 25.35123249623886 18.184728305535884 33 36.019018514413936 18.070217077041068 28.183139506373834 17.72762490217116 34 26.23444791190599 20.221764979335806 36.388404512189624 17.155382596568586 35 21.892122498376875 29.59301242205567 32.1036681645839 16.411196914983552 36 21.393984924061286 37.785488575357135 23.9899258364243 16.83060066415728 37 29.74181032876374 31.777670114295464 21.544822770434212 16.935696786506586 38 28.46021823431453 31.550844515406446 21.510300714567325 18.478636535711694 39 31.39471067182667 27.589987819206424 20.85999148717486 20.155310021792047 40 27.05383675382832 23.466720541996278 20.425013583252095 29.05442912092331 41 20.176690158664154 28.925795233210216 22.0079283039667 28.889586304158925 42 18.653286754710983 26.721326588455902 22.655216851470815 31.970169805362296 43 20.802441650860402 21.464519760934763 24.92347284036099 32.80956574784384 44 23.228518356514762 20.593387064821044 24.20643404816219 31.971660530502 45 26.772285850468496 24.102985569388352 22.591704114597533 26.533024465545612 46 24.44506775934204 28.394744016994267 21.758545679937388 25.401642543726304 47 21.282533605063758 23.96674113754097 26.037240667766405 28.71348458962887 48 23.448086477749946 21.10972717768463 30.878998232706117 24.563188111859308 49 28.431306012526015 20.81852579052566 26.69276743314784 24.057400763800484 50 23.289716546460607 19.301752190483292 29.267602815901327 28.140928447154774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 23.0 6 46.0 7 131.5 8 217.0 9 725.5 10 1234.0 11 3792.0 12 6350.0 13 7473.0 14 8596.0 15 8552.5 16 8509.0 17 9767.0 18 11025.0 19 12397.0 20 13769.0 21 13627.5 22 13486.0 23 14018.0 24 14550.0 25 16391.5 26 18233.0 27 20875.5 28 23518.0 29 27689.0 30 31860.0 31 33722.5 32 35585.0 33 38641.5 34 41698.0 35 47552.5 36 53407.0 37 57788.0 38 62169.0 39 63382.0 40 64595.0 41 71111.0 42 77627.0 43 81433.5 44 85240.0 45 94029.0 46 102818.0 47 104404.5 48 105991.0 49 116828.0 50 127665.0 51 135206.5 52 142748.0 53 160958.0 54 179168.0 55 204181.0 56 229194.0 57 243373.0 58 257552.0 59 261677.0 60 265802.0 61 278944.0 62 292086.0 63 209252.5 64 126419.0 65 93384.5 66 60350.0 67 47157.5 68 33965.0 69 29228.5 70 24492.0 71 19445.0 72 14398.0 73 11672.5 74 8947.0 75 6487.5 76 4028.0 77 2448.5 78 869.0 79 764.0 80 659.0 81 397.0 82 135.0 83 85.0 84 35.0 85 34.5 86 34.0 87 25.5 88 17.0 89 10.5 90 4.0 91 4.5 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2549095.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 6.801182346670462 #Duplication Level Percentage of deduplicated Percentage of total 1 65.4931173030652 4.454306332300248 2 11.342566729877378 1.5428572921834744 3 5.036671756163081 1.0276596910197016 4 2.699737602447785 0.7344563088964124 5 1.5242603827491814 0.5183386403441447 6 0.9982067130896027 0.40733915252357705 7 0.671365724803516 0.31962565009853044 8 0.45690673095737866 0.24860047941297872 9 0.3804837997191191 0.2328965731659395 >10 4.819747248391813 8.67847292955301 >50 3.056563784906892 15.004524290777018 >100 3.2328230230446002 40.80449482855493 >500 0.20152506749533702 9.235816251678893 >1k 0.08061002699813481 9.393579453724058 >5k 0.0024062694626308897 1.2328114118321973 >10k+ 0.003007836828288612 6.164220713934893 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TCAAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 62946 2.4693469643147865 No Hit TCAAAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 47066 1.8463807743532508 No Hit TCAAAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 18825 0.7384973882887849 No Hit TCAAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 11111 0.43588018492837655 No Hit TCAAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 10716 0.4203844893972174 No Hit TCAAAGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCT 9027 0.3541256798981599 No Hit TCAAAGGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC 8864 0.3477312536409981 No Hit TCAAAGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCT 6731 0.2640544977727389 No Hit TCAAAGGGGGGAGCTGAAGAGATGGCTGAGCGGTTAAGAGCACTGACTGC 5510 0.2161551452574345 No Hit TCAAAGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 4955 0.19438271229593249 No Hit TCAAAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTG 4859 0.1906166698377267 No Hit TCAAAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 4485 0.17594479609430014 No Hit TCAAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGC 4239 0.1662943122951479 No Hit TCAAAGGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGC 4013 0.15742842067478852 No Hit TCAAAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 3891 0.15264240838415202 No Hit TCAAAGGGGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACT 3763 0.14762101843987768 No Hit TCAAAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 3526 0.13832360112118222 No Hit TCAAAGGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 3088 0.12114103240561847 No Hit TCAAAGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTC 2925 0.11474660614845661 No Hit TCAAAGGGGGCTCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGA 2907 0.11404047318754303 No Hit TCAAAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGTACCCGACTG 2766 0.10850909832705333 No Hit TCAAAGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 2642 0.10364462681853755 No Hit TCAAAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 2623 0.10289926424868433 No Hit TCAAAGGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCAT 2616 0.10262465698610683 No Hit TCAAAGGGGGCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTGTTGT 2604 0.10215390167883111 No Hit TCAAAGGGGGTGTGAGAGATGTGAGTGTGTGTGGGGTGTATGAGTATGTG 2593 0.10172237598049504 No Hit TCAAAGGGGGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGC 2577 0.10109470223746075 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.007061329609135791 0.0 0.0 0.0 0.0 6 0.007061329609135791 0.0 0.0 0.0 0.0 7 0.007139788827015078 0.0 0.0 0.0 0.0 8 0.007453625698532224 0.0 0.0 0.0 0.0 9 0.008983580447178313 0.0 0.0 0.0 0.0 10 0.017810242458598052 0.0 0.0 0.0 0.0 11 0.02459696480515634 0.0 0.0 0.0 0.0 12 0.030520635755042477 0.0 0.0 0.0 0.0 13 0.03754273575523862 0.0 0.0 0.0 0.0 14 0.05095926201259663 0.0 0.0 0.0 0.0 15 0.06029590894023173 0.0 0.0 0.0 0.0 16 0.07347705754395187 0.0 0.0 0.0 0.0 17 0.08395136313083663 0.0 0.0 0.0 0.0 18 0.0937195357568078 0.0 0.0 0.0 0.0 19 0.11215745195844015 0.0 0.0 0.0 0.0 20 0.12196485419335097 0.0 0.0 0.0 0.0 21 0.13428295140039898 0.0 0.0 0.0 0.0 22 0.14244271005984477 0.0 0.0 0.0 0.0 23 0.1489940547527652 0.0 0.0 0.0 0.0 24 0.157153813412211 0.0 0.0 0.0 0.0 25 0.16315594357997643 0.0 0.0 0.0 0.0 26 0.16696121564712182 0.0 0.0 0.0 0.0 27 0.17335564190428368 0.0 0.0 0.0 0.0 28 0.18065234916705733 0.0 0.0 0.0 0.0 29 0.18626218324542632 0.0 0.0 0.0 0.0 30 0.191244343580761 0.0 0.0 0.0 0.0 31 0.19705032570382822 0.0 0.0 0.0 0.0 32 0.20297399665371435 0.0 0.0 0.0 0.0 33 0.20811307542480761 0.0 0.0 0.0 0.0 34 0.21501748659818484 0.0 0.0 0.0 0.0 35 0.22800248715720678 0.0 0.0 0.0 0.0 36 0.2446358413476155 0.0 0.0 0.0 0.0 37 0.255580902241776 0.0 0.0 0.0 0.0 38 0.26358374246546323 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAA 35 1.447006E-7 44.0 13 CGGCGAA 20 7.858289E-4 44.0 25 TCGTTCG 25 4.444371E-5 44.0 38 CGTATGA 30 2.5289355E-6 44.0 28 CGAAACG 35 1.447006E-7 44.0 44 CGCATTC 40 8.3200575E-9 44.0 43 CGCATTA 20 7.858289E-4 44.0 12 TAGCGTA 75 0.0 44.0 30 CGTGAAT 25 4.444371E-5 44.0 13 ATTACGT 60 0.0 44.0 20 CGACCGT 35 1.447006E-7 44.0 29 ATAGACG 20 7.858289E-4 44.0 25 TTATCGC 30 2.5289355E-6 44.0 20 CTTATCG 20 7.858289E-4 44.0 40 TACGACG 20 7.858289E-4 44.0 13 TACGAAC 20 7.858289E-4 44.0 29 ACGTGCG 40 8.3200575E-9 44.0 39 TTACGTC 20 7.858289E-4 44.0 30 TTACGCG 20 7.858289E-4 44.0 32 CGGTCTA 20 7.858289E-4 44.0 38 >>END_MODULE