##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527135_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2109960 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.48711539555252 33.0 31.0 34.0 31.0 34.0 2 32.87821475288631 34.0 31.0 34.0 31.0 34.0 3 32.99801702401941 34.0 31.0 34.0 31.0 34.0 4 36.32303171624107 37.0 37.0 37.0 35.0 37.0 5 36.329880661244765 37.0 37.0 37.0 35.0 37.0 6 36.291711691216896 37.0 37.0 37.0 35.0 37.0 7 36.518244895637835 37.0 37.0 37.0 35.0 37.0 8 36.672278147453035 37.0 37.0 37.0 35.0 37.0 9 38.758171244952514 39.0 39.0 39.0 39.0 39.0 10 38.23309114864737 39.0 39.0 39.0 37.0 39.0 11 37.982101082484974 39.0 38.0 39.0 35.0 39.0 12 37.71231113386036 39.0 37.0 39.0 35.0 39.0 13 37.58195273844054 39.0 37.0 39.0 35.0 39.0 14 38.46376898140249 40.0 38.0 40.0 35.0 40.0 15 38.45007772659197 40.0 38.0 40.0 35.0 40.0 16 38.34186145708924 40.0 38.0 40.0 35.0 40.0 17 38.41976151206658 40.0 38.0 40.0 35.0 40.0 18 38.38821352063546 40.0 38.0 40.0 35.0 40.0 19 38.413341011204004 40.0 38.0 40.0 35.0 40.0 20 38.20405078769266 40.0 38.0 40.0 34.0 40.0 21 38.38333996853021 40.0 38.0 40.0 35.0 40.0 22 38.218696089025386 40.0 38.0 40.0 34.0 40.0 23 38.29509421979564 40.0 38.0 40.0 35.0 40.0 24 38.319514587954274 40.0 38.0 40.0 35.0 40.0 25 38.25517877116154 40.0 38.0 40.0 35.0 40.0 26 38.1450880585414 40.0 38.0 40.0 34.0 40.0 27 38.042655311001155 40.0 38.0 40.0 34.0 40.0 28 37.936504483497316 40.0 38.0 40.0 34.0 40.0 29 38.106445619822175 40.0 38.0 40.0 34.0 40.0 30 38.097226487705925 40.0 38.0 40.0 34.0 40.0 31 38.095252516635384 40.0 38.0 40.0 35.0 40.0 32 37.37341181823352 40.0 37.0 40.0 33.0 40.0 33 37.61671785247114 40.0 37.0 40.0 33.0 40.0 34 37.650070617452464 40.0 37.0 40.0 33.0 40.0 35 37.68397694743028 40.0 37.0 40.0 33.0 40.0 36 37.48171908472199 40.0 37.0 40.0 33.0 40.0 37 37.48495089954312 40.0 37.0 40.0 33.0 40.0 38 37.31170069574779 40.0 37.0 40.0 33.0 40.0 39 37.28877561659937 40.0 36.0 40.0 33.0 40.0 40 37.21276659273162 40.0 36.0 40.0 33.0 40.0 41 37.15524701890083 40.0 36.0 40.0 33.0 40.0 42 37.028392481374055 40.0 35.0 40.0 33.0 40.0 43 36.9356689226336 40.0 35.0 40.0 32.0 40.0 44 36.8270374793835 40.0 35.0 40.0 32.0 40.0 45 36.727559764166145 40.0 35.0 40.0 32.0 40.0 46 36.45005355551764 39.0 35.0 40.0 31.0 40.0 47 36.42086153292006 39.0 35.0 40.0 31.0 40.0 48 36.329292024493355 39.0 35.0 40.0 31.0 40.0 49 35.98585186449032 39.0 35.0 40.0 30.0 40.0 50 35.63254990615936 38.0 35.0 40.0 29.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 2.0 14 6.0 15 6.0 16 32.0 17 89.0 18 173.0 19 377.0 20 630.0 21 1061.0 22 1765.0 23 2758.0 24 4132.0 25 6019.0 26 8208.0 27 10828.0 28 14903.0 29 19466.0 30 25568.0 31 33238.0 32 41987.0 33 55931.0 34 92258.0 35 120312.0 36 154867.0 37 286628.0 38 694703.0 39 534010.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 100.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 99.66838233900168 0.2662609717719767 0.02801000966842973 0.03734667955790631 8 99.55800109954691 0.37697397107054165 0.043744905116684676 0.021280024265862858 9 98.23868698932681 0.9820565318773816 0.2246014142448198 0.5546550645509868 10 45.99224629850803 42.70142561944302 4.083394945875751 7.222933136173197 11 29.511981269787107 23.06470264839144 29.664116855295834 17.75919922652562 12 29.04040834897344 17.272744507004873 28.86803541299361 24.818811731028077 13 23.33233805380197 17.925884850897646 32.315067584219605 26.42670951108078 14 26.797569622172933 19.44979999620846 30.326309503497693 23.42632087812091 15 25.023602343172378 20.506218127357865 29.39401694818859 25.076162581281164 16 27.941856717662894 22.57426681074523 27.360139528711446 22.123736942880434 17 29.08742345826461 20.393941117367152 24.369324536958047 26.149310887410188 18 24.96796147794271 21.129405296782878 27.89792223549262 26.0047109897818 19 25.551621831693495 21.174572029801514 27.391419742554362 25.882386395950636 20 24.255625699065387 23.17385163699786 28.17195586646192 24.39856679747483 21 26.162865646742116 20.99945022654458 29.563309257047525 23.274374869665778 22 25.864850518493242 21.19400367779484 28.066787995980967 24.874357807730952 23 23.880642287057576 22.38141955297731 29.90905040853855 23.828887751426567 24 24.734307759388805 23.097926027033687 26.54036095471004 25.62740525886747 25 23.951638893628317 26.24599518474284 25.523943581868853 24.278422339759995 26 26.104096760128154 24.93388500255929 25.838688885097348 23.123329352215208 27 26.162154732791144 23.45589489848149 25.461572731236608 24.92037763749076 28 28.383571252535596 22.227530379722836 25.033175984378854 24.355722383362718 29 27.554029460274126 22.94896585717265 24.534967487535308 24.962037195017913 30 26.64576579650799 23.18849646438795 25.815465696032152 24.350272043071907 31 27.51824679140837 24.210221994729757 24.506483535232896 23.765047678628978 32 26.94425486739085 24.25993857703464 24.749616106466473 24.04619044910804 33 27.60308252289143 23.07527156912927 24.948956378319966 24.37268952965933 34 25.244364822081934 25.21464861893116 26.332821475288632 23.20816508369827 35 25.801531782593035 25.177444122163458 26.85069859144249 22.17032550380102 36 26.229075432709624 25.598873912301656 25.36062295019811 22.811427704790614 37 27.912567062882708 26.45998028398643 23.312716828755047 22.314735824375816 38 25.63484615822101 26.397372462037193 25.192278526607137 22.775502853134657 39 26.06641832072646 25.51825627026105 24.664685586456613 23.75063982255588 40 25.32597774365391 26.03992492748678 24.95928832774081 23.674809001118504 41 25.07876926576807 25.60536692638723 25.35337162789816 23.96249217994654 42 23.657415306451306 24.494682363646707 26.737426301920415 25.11047602798157 43 24.497004682553225 25.42261464672316 26.113717795598017 23.966662875125593 44 24.25372992852945 25.380338963771827 25.500625604276863 24.865305503421865 45 24.082447060607784 24.942415969970995 25.801579176856432 25.17355779256479 46 25.248156363153807 25.399438851921364 25.303465468539688 24.048939316385145 47 24.14609755635178 25.79736108741398 25.947600902386775 24.108940453847467 48 25.515744374300937 25.232184496388555 25.168818366224954 24.083252763085554 49 24.753928984435724 26.36049972511327 25.067347248289067 23.818224042161937 50 25.150524180553184 26.006985914424916 25.28498170581433 23.557508199207568 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 7.5 2 15.0 3 10.5 4 6.0 5 72.5 6 139.0 7 1023.5 8 1908.0 9 4734.5 10 7561.0 11 8690.5 12 9820.0 13 9443.0 14 9066.0 15 9216.5 16 9367.0 17 9819.5 18 10272.0 19 10327.5 20 10383.0 21 11688.0 22 12993.0 23 15363.5 24 17734.0 25 20094.0 26 22454.0 27 27247.0 28 32040.0 29 34298.0 30 36556.0 31 45272.0 32 53988.0 33 51171.0 34 48354.0 35 56136.0 36 63918.0 37 64463.0 38 65008.0 39 72231.0 40 79454.0 41 81798.5 42 84143.0 43 97522.0 44 110901.0 45 112291.0 46 113681.0 47 120419.5 48 127158.0 49 133354.5 50 139551.0 51 145156.5 52 150762.0 53 155464.0 54 160166.0 55 159327.0 56 158488.0 57 156039.0 58 153590.0 59 140385.5 60 127181.0 61 115256.0 62 103331.0 63 85043.0 64 66755.0 65 52729.5 66 38704.0 67 35443.0 68 32182.0 69 27402.5 70 22623.0 71 19333.5 72 16044.0 73 11744.0 74 7444.0 75 5046.5 76 2649.0 77 2574.0 78 2499.0 79 1648.5 80 798.0 81 499.5 82 201.0 83 136.0 84 71.0 85 36.5 86 2.0 87 1.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2109960.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 7.658174542133825 #Duplication Level Percentage of deduplicated Percentage of total 1 65.96485615406414 5.051703820745737 2 10.919497739977423 1.6724683921036587 3 4.917093397741552 1.1296787843963598 4 2.566871543956751 0.7863020124342935 5 1.5265313207150581 0.5845221649034991 6 0.9447033514743153 0.4340821893677463 7 0.6290454949992524 0.3372138136953071 8 0.4588949198138818 0.281143791394657 9 0.35513399538131113 0.24477103102278855 >10 4.641334790936156 9.605771701970538 >50 3.436747512773961 19.217286805702663 >100 3.457454709235789 47.611311356398645 >500 0.13783227644904042 7.104997978782296 >1k 0.04335569259195168 5.596214815550685 >5k 6.470998894321147E-4 0.34253134153113374 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TTCATAGGGATTCTCCTCCACCTCTGACATGCCCAGATATTTCTCTAGAT 6912 0.3275891486094523 No Hit TTCATAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3889 0.18431629035621527 No Hit TTCATAGGGATGTCATATTTATTCAGATTTATAAAGCTAGCAATGTCCGT 3858 0.18284706819086616 No Hit TTCATAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 3375 0.15995563896945914 No Hit TTCATAGGGATATGTACTTTGAGTATAACATCAAGTTTTAACAAATAAAG 3190 0.15118770024076286 No Hit TTCATAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 3182 0.150808546133576 No Hit TTCATAGGGACTGTGGGAATTTTGCTTAGAACTCTTGAAGGAATATTCTT 3061 0.14507384026237463 No Hit TTCATAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 2881 0.13654287285067016 No Hit TTCATAGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCC 2858 0.1354528047925079 No Hit TTCATAGGGTTAGGCAAGAATTAGTGCTGTTGTATAAACAAAATACCAGC 2607 0.12355684467951998 No Hit TTCATAGGGATATTTAGTGCTCTGTCTGCTGTCCCACTGTGTGGTCCAGT 2528 0.11981269787104969 No Hit TTCATAGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 2357 0.11170827882993042 No Hit TTCATAGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 2350 0.11137651898614193 No Hit TTCATAGGGACGTGGGATGGAGTTCTAACCTCATAGGGTGGTGGTGGGGA 2253 0.10677927543650116 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.007583082143737322 0.0 0.0 0.0 0.0 7 0.007583082143737322 0.0 0.0 0.0 0.0 8 0.007962236250924189 0.0 0.0 0.0 0.0 9 0.008341390358111054 0.0 0.0 0.0 0.0 10 0.013412576541735388 0.0 0.0 0.0 0.0 11 0.023270583328593906 0.0 0.0 0.0 0.0 12 0.029621414623973913 0.0 0.0 0.0 0.0 13 0.03601964018275228 0.0 0.0 0.0 0.0 14 0.048958274090504086 0.0 0.0 0.0 0.0 15 0.058579309560370815 0.0 0.0 0.0 0.0 16 0.07180230904851277 0.0 0.0 0.0 0.0 17 0.07848490018768128 0.0 0.0 0.0 0.0 18 0.0868736848091907 0.0 0.0 0.0 0.0 19 0.09715823996663443 0.0 0.0 0.0 0.0 20 0.10403040815939639 0.0 0.0 0.0 0.0 21 0.11208743293711729 0.0 0.0 0.0 0.0 22 0.12057100608542343 0.0 0.0 0.0 0.0 23 0.12919676202392463 0.0 0.0 0.0 0.0 24 0.1373959695918406 0.0 0.0 0.0 0.0 25 0.14497905173557793 0.0 0.0 0.0 0.0 26 0.15151946008455136 0.0 0.0 0.0 0.0 27 0.15900775370149198 0.0 0.0 0.0 0.0 28 0.16758611537659482 0.0 0.0 0.0 0.0 29 0.17493222620334034 0.0 0.0 0.0 0.0 30 0.1846480502000038 0.0 0.0 0.0 0.0 31 0.19270507497772468 0.0 0.0 0.0 0.0 32 0.20095167680903903 0.0 0.0 0.0 0.0 33 0.20919827864035337 0.0 0.0 0.0 0.0 34 0.2192932567442037 0.0 0.0 0.0 0.0 35 0.23043090864281787 0.0 0.0 0.0 0.0 36 0.24237426301920414 0.0 0.0 0.0 0.0 37 0.2515213558550873 0.0 0.0 0.0 0.0 38 0.2611897855883524 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 40 8.3182385E-9 44.000004 39 TAGCGAT 20 7.857979E-4 44.000004 29 CGCGCAT 20 7.857979E-4 44.000004 34 CGTCTAT 20 7.857979E-4 44.000004 33 TAACGTA 20 7.857979E-4 44.000004 32 ACTAGCG 20 7.857979E-4 44.000004 27 TACGCGT 20 7.857979E-4 44.000004 23 CGAATTG 20 7.857979E-4 44.000004 28 CGTACGT 95 0.0 44.000004 27 CTACCGA 20 7.857979E-4 44.000004 44 TACCGCG 40 8.3182385E-9 44.000004 41 ACGAACG 65 0.0 44.000004 10 CGTATTG 100 0.0 44.0 20 CACGATT 30 2.5287281E-6 44.0 24 TAACGAT 25 4.4441105E-5 44.0 43 CGTTAGT 35 1.4468606E-7 44.0 32 CGTTACG 30 2.5287281E-6 44.0 12 ACGATAC 25 4.4441105E-5 44.0 35 TTACGTA 100 0.0 44.0 24 ACGTACG 90 0.0 44.0 26 >>END_MODULE