SRR1527133_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527133_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2168888
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTCATAGGGATTCTCCTCCACCTCTGACATGCCCAGATATTTCTCTAGATCT	6364	0.29342225140256206	No Hit
TTCATAGGGATGTCATATTTATTCAGATTTATAAAGCTAGCAATGTCCGTGG	3654	0.16847342970222529	No Hit
TTCATAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG	3524	0.162479574786711	No Hit
TTCATAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	3211	0.14804821641320345	No Hit
TTCATAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT	3120	0.1438525179723434	No Hit
TTCATAGGGATATGTACTTTGAGTATAACATCAAGTTTTAACAAATAAAGAC	3100	0.1429303864468797	No Hit
TTCATAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	2550	0.11757176949662686	No Hit
TTCATAGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCAT	2526	0.11646521166607036	No Hit
TTCATAGGGACTGTGGGAATTTTGCTTAGAACTCTTGAAGGAATATTCTTTG	2477	0.11420598942868421	No Hit
TTCATAGGGTTAGGCAAGAATTAGTGCTGTTGTATAAACAAAATACCAGCCA	2422	0.11167012773365892	No Hit
TTCATAGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC	2343	0.10802770820807714	No Hit
TTCATAGGGATATTTAGTGCTCTGTCTGCTGTCCCACTGTGTGGTCCAGTCC	2283	0.10526131363168591	No Hit
TTCATAGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC	2220	0.10235659932647515	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAA	20	6.3126994E-4	46.0	34
AATTGCG	30	1.8621722E-6	46.0	31
TCGTCTA	20	6.3126994E-4	46.0	17
ATAACGA	50	1.6370905E-11	46.0	38
ATTATCG	20	6.3126994E-4	46.0	39
ACGAACG	30	1.8621722E-6	46.0	10
CGTACGT	105	0.0	43.809525	27
ACGTACG	105	0.0	43.809525	26
TAGGGAT	35965	0.0	43.531487	5
AGGGATC	9360	0.0	43.002136	6
TAGGGAC	16275	0.0	42.72135	5
TAGGGGC	20375	0.0	42.71509	5
ATAGGGA	97080	0.0	42.706837	4
AGGGATG	9275	0.0	42.67709	6
TTCATAG	233725	0.0	42.55873	1
TAGGGAG	28905	0.0	42.554577	5
TCATAGG	232915	0.0	42.534916	2
CATAGGG	229355	0.0	42.494167	3
ACGGGTA	65	0.0	42.46154	30
ATAGGGG	106575	0.0	42.28159	4