##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527108_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3446206 Sequences flagged as poor quality 0 Sequence length 50 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61329908891111 34.0 31.0 34.0 31.0 34.0 2 33.05266632348734 34.0 31.0 34.0 31.0 34.0 3 32.98814725527145 34.0 31.0 34.0 31.0 34.0 4 36.473913631396385 37.0 37.0 37.0 35.0 37.0 5 36.41688918190033 37.0 37.0 37.0 35.0 37.0 6 36.39369759091592 37.0 37.0 37.0 35.0 37.0 7 36.53869211532915 37.0 37.0 37.0 35.0 37.0 8 36.67699667402355 37.0 37.0 37.0 35.0 37.0 9 38.75832785387757 39.0 39.0 39.0 39.0 39.0 10 38.266721142032715 39.0 39.0 39.0 37.0 39.0 11 38.0193528767578 39.0 38.0 39.0 35.0 39.0 12 37.21266285300415 39.0 35.0 39.0 35.0 39.0 13 37.05772173805048 39.0 35.0 39.0 34.0 39.0 14 37.71432177879094 40.0 36.0 40.0 34.0 40.0 15 37.677421489023004 40.0 36.0 40.0 34.0 40.0 16 37.544728318620535 40.0 35.0 40.0 33.0 40.0 17 37.396847431639316 40.0 35.0 40.0 33.0 40.0 18 37.378017738927966 40.0 35.0 40.0 33.0 40.0 19 37.373645974732796 40.0 35.0 40.0 33.0 40.0 20 37.206289757489834 40.0 35.0 40.0 32.0 40.0 21 37.45154178247034 40.0 35.0 40.0 33.0 40.0 22 37.327222458552974 40.0 35.0 40.0 33.0 40.0 23 37.424754643222144 40.0 35.0 40.0 33.0 40.0 24 37.49013117613979 40.0 35.0 40.0 34.0 40.0 25 37.45805590263612 40.0 35.0 40.0 34.0 40.0 26 37.32995996176665 39.0 35.0 40.0 34.0 40.0 27 37.25139356149923 39.0 35.0 40.0 34.0 40.0 28 37.09908664775118 39.0 35.0 40.0 33.0 40.0 29 37.30774770863959 40.0 35.0 40.0 34.0 40.0 30 37.33478875029525 40.0 35.0 40.0 34.0 40.0 31 37.32064537059015 40.0 35.0 40.0 34.0 40.0 32 36.61171705928201 40.0 35.0 40.0 32.0 40.0 33 36.82903082404244 39.0 35.0 40.0 32.0 40.0 34 36.651568420460066 39.0 35.0 40.0 31.0 40.0 35 36.71828758930836 39.0 35.0 40.0 31.0 40.0 36 36.67045353643978 39.0 35.0 40.0 32.0 40.0 37 36.76370013864522 39.0 35.0 40.0 32.0 40.0 38 36.59075719791562 39.0 35.0 40.0 32.0 40.0 39 36.590374167998085 39.0 35.0 40.0 32.0 40.0 40 36.51173348314059 39.0 35.0 40.0 32.0 40.0 41 36.41301709764303 39.0 35.0 40.0 32.0 40.0 42 36.34690961596608 39.0 35.0 40.0 31.0 40.0 43 36.28287658950161 39.0 35.0 40.0 31.0 40.0 44 36.1784347772594 38.0 35.0 40.0 31.0 40.0 45 36.085520714664185 38.0 35.0 40.0 31.0 40.0 46 35.75808671913403 38.0 35.0 40.0 30.0 40.0 47 35.698814000091694 38.0 35.0 40.0 30.0 40.0 48 35.619149580727324 37.0 35.0 40.0 30.0 40.0 49 35.37769245367224 37.0 35.0 40.0 29.0 40.0 50 35.04544040605814 36.0 34.0 40.0 28.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 0.0 14 1.0 15 22.0 16 75.0 17 185.0 18 447.0 19 1014.0 20 1655.0 21 2630.0 22 4257.0 23 6279.0 24 8924.0 25 12487.0 26 17482.0 27 22913.0 28 30305.0 29 39843.0 30 52489.0 31 69866.0 32 90013.0 33 124859.0 34 284078.0 35 382908.0 36 233216.0 37 402165.0 38 961844.0 39 696246.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 0.0 0.0 0.0 100.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 99.24017890979239 0.5071374143043104 0.19891440035795888 0.05376927554533884 8 99.17718209532454 0.5176997544546089 0.1745107518238898 0.13060739839696175 9 97.7297062334637 1.1805736511398333 0.41950481195842615 0.6702153034380418 10 57.55332095643732 27.51446083025797 5.7554017374469195 9.176816475857798 11 40.59121828468757 17.42356667012941 21.373504659907155 20.611710385275867 12 37.34007775507326 12.079196658586284 26.472358297791832 24.108367288548624 13 27.431354945119356 12.906860472066963 27.35518422288163 32.306600359932055 14 23.76050648162066 15.55884935491378 32.99518368896114 27.685460474504424 15 28.856516412541794 18.122306095456857 30.222105120819826 22.799072371181524 16 36.18106404550395 17.596452446545563 26.13149068860074 20.090992819349744 17 32.2715763364117 18.591894970875217 25.078245467624395 24.05828322508869 18 32.79267112877176 18.88099550636265 26.935853515431173 21.39047984943442 19 31.950411554039427 24.12006130800074 22.676328693061297 21.253198444898537 20 34.0687991373702 22.870803428465972 22.77092547572606 20.289471958437773 21 31.930621674966613 23.645568488941173 24.209318885754364 20.214490950337847 22 28.176435186985337 20.35566068888511 29.580239834763216 21.887664289366334 23 32.36890075636802 19.107853680250106 26.83580145818329 21.687444105198587 24 35.44318012330081 18.469905745622867 22.842598498174517 23.244315632901806 25 29.103077413248073 18.858971286104197 22.294604559332782 29.74334674131494 26 24.77010950593203 19.379717869448314 27.313108966788402 28.53706365783125 27 22.59629865423019 17.619753433195807 26.65360109059064 33.130346821983366 28 24.28215260492263 24.60659635552837 22.44920936241188 28.66204167713712 29 31.64503224705662 22.683031716618217 21.704535364397834 23.96740067192733 30 30.826276780900503 19.026924101461145 26.391631840928838 23.755167276709518 31 33.99538506984202 18.298586909778464 24.32779700342928 23.378231016950235 32 36.961835711504186 17.62520870777893 24.645131486626163 20.76782409409072 33 35.466219953189096 18.12802252680194 25.713030503690142 20.692727016318816 34 28.029432947421018 20.288949644913856 31.763568399567525 19.9180490080976 35 24.94044174956459 28.086394138945842 28.794912434137714 18.17825167735185 36 25.572499148338785 32.30723874312795 23.214282605276644 18.905979503256624 37 30.90726439452546 28.58227279506797 19.884446838059013 20.62601597234756 38 30.247988657671655 28.31281705156337 20.38464908946244 21.05454520130253 39 31.26545540225976 25.257166866983578 20.1148451369419 23.362532593814763 40 27.7979900214903 23.103581155624475 20.270146358052884 28.828282464832338 41 23.03692814648921 26.447635457659814 20.997613027195705 29.51782336865527 42 21.96708496241954 24.27217061313224 21.93867691020212 31.8220675142461 43 22.916738001152574 20.275485562964025 24.19655122183642 32.61122521404698 44 24.596817485663944 19.250996603221047 23.99821716983837 32.15396874127664 45 28.340992964436833 21.548247551075008 22.652882619321073 27.457876865167087 46 26.225739262249558 25.318103444773758 21.949877633548315 26.506279659428365 47 23.517224449147843 22.551553795681397 25.672348083660694 28.25887367151006 48 25.918589892769035 21.874867608030396 27.870939810330547 24.33560268887002 49 29.354455305341588 20.32823922887953 24.320687736020425 25.996617729758466 50 24.754875361484487 20.386535221632137 26.169474488756624 28.689114928126756 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 2.0 8 4.0 9 58.0 10 112.0 11 433.5 12 755.0 13 2725.0 14 4695.0 15 5758.0 16 6821.0 17 6707.0 18 6593.0 19 7879.5 20 9166.0 21 10171.5 22 11177.0 23 11469.5 24 11762.0 25 11891.5 26 12021.0 27 14733.0 28 17445.0 29 21339.5 30 25234.0 31 25892.0 32 26550.0 33 30619.0 34 34688.0 35 35801.0 36 36914.0 37 45056.0 38 53198.0 39 58372.5 40 63547.0 41 66230.5 42 68914.0 43 75393.0 44 81872.0 45 89691.0 46 97510.0 47 105829.0 48 114148.0 49 124128.5 50 134109.0 51 145672.0 52 157235.0 53 170886.5 54 184538.0 55 210277.0 56 236016.0 57 277749.5 58 319483.0 59 335411.5 60 351340.0 61 371567.0 62 391794.0 63 424557.5 64 457321.0 65 333142.0 66 208963.0 67 162391.5 68 115820.0 69 92511.5 70 69203.0 71 60082.5 72 50962.0 73 41929.0 74 32896.0 75 31206.5 76 29517.0 77 21498.5 78 13480.0 79 9658.5 80 5837.0 81 4284.0 82 2731.0 83 2002.0 84 1273.0 85 816.0 86 359.0 87 273.0 88 187.0 89 100.0 90 13.0 91 8.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3446206.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 6.365316458666763 #Duplication Level Percentage of deduplicated Percentage of total 1 64.79938438874645 4.1246858796116195 2 11.016538585119893 1.402475087468022 3 5.090349745422388 0.9720506104472189 4 2.740077579204224 0.6976584365172971 5 1.608831417470684 0.5120360550423161 6 0.9857690209670582 0.37648390641632623 7 0.6923255995538669 0.30848100735175943 8 0.4815393025789069 0.24521200385603445 9 0.3895355157748926 0.22315651468174533 >10 4.8587482970580265 8.256856797375852 >50 3.5352816466928902 16.407340124440132 >100 3.5214645068713435 40.36404437556217 >500 0.17819344142468982 7.76878536726884 >1k 0.09624351649141001 11.031049863429486 >5k 0.003335171363563713 1.4628284297955005 >10k+ 0.0023822652596883665 5.846855540735679 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCATCTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 86638 2.514011060279043 No Hit CCATCTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 50800 1.4740848341625545 No Hit CCATCTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 27888 0.8092377530536481 No Hit CCATCTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 16115 0.4676156909946765 No Hit CCATCTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 11348 0.329289659410958 No Hit CCATCTGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 9887 0.28689521171978694 No Hit CCATCTGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCT 8616 0.25001407344772775 No Hit CCATCTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 8470 0.24577753042041017 No Hit CCATCTGGGATTGTTAATTATTCTTTTGGATTCTTTTGAACTTGTAATAC 5609 0.16275869753578281 No Hit CCATCTGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTG 5358 0.15547532561895602 No Hit CCATCTGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGC 5184 0.15042629488776935 No Hit CCATCTGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGTCGGC 5110 0.1482790059561152 No Hit CCATCTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 4907 0.14238847010306407 No Hit CCATCTGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC 4749 0.13780371805980257 No Hit CCATCTGGGGGGGCTGGTGAGGTGGCTCAGTGGGTAAGAGCACCCGACTG 4369 0.12677709922157876 No Hit CCATCTGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCT 4321 0.1253842631578031 No Hit CCATCTGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAA 4311 0.12509408897784985 No Hit CCATCTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 4170 0.1210026330405089 No Hit CCATCTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 4069 0.11807187382298098 No Hit CCATCTGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCC 3917 0.11366122628769144 No Hit CCATCTGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 3909 0.11342908694372884 No Hit CCATCTGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 3785 0.10983092711230842 No Hit CCATCTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGC 3757 0.1090184394084393 No Hit CCATCTGGGGCTCAGCCCGTAGCCCGTCGGTTCCGGAGTAAGTTCCAGGT 3492 0.10132882363967795 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 2.0312192596728113E-4 0.0 0.0 0.0 0.0 8 3.191915979485846E-4 0.0 0.0 0.0 0.0 9 3.7722643393923636E-4 0.0 0.0 0.0 0.0 10 0.0031338811434951943 0.0 0.0 0.0 0.0 11 0.006499901630952996 0.0 0.0 0.0 0.0 12 0.01027216597034536 0.0 0.0 0.0 0.0 13 0.014566743833653589 0.0 0.0 0.0 0.0 14 0.02475185755001297 0.0 0.0 0.0 0.0 15 0.03403743130851725 0.0 0.0 0.0 0.0 16 0.04697919973443259 0.0 0.0 0.0 0.0 17 0.05333401427540896 0.0 0.0 0.0 0.0 18 0.05945668947242272 0.0 0.0 0.0 0.0 19 0.07045429089265122 0.0 0.0 0.0 0.0 20 0.07834702858737987 0.0 0.0 0.0 0.0 21 0.08565941792220198 0.0 0.0 0.0 0.0 22 0.092072267299169 0.0 0.0 0.0 0.0 23 0.09836904700415472 0.0 0.0 0.0 0.0 24 0.10425958285720587 0.0 0.0 0.0 0.0 25 0.11038225805421963 0.0 0.0 0.0 0.0 26 0.11612770681729415 0.0 0.0 0.0 0.0 27 0.1237012529140742 0.0 0.0 0.0 0.0 28 0.13301584409057382 0.0 0.0 0.0 0.0 29 0.13887736252562963 0.0 0.0 0.0 0.0 30 0.14537726415658264 0.0 0.0 0.0 0.0 31 0.15144190451760572 0.0 0.0 0.0 0.0 32 0.15817394549252134 0.0 0.0 0.0 0.0 33 0.16400644650958185 0.0 0.0 0.0 0.0 34 0.17198623645829647 0.0 0.0 0.0 0.0 35 0.1871913634878472 0.0 0.0 0.0 0.0 36 0.20155498539553351 0.0 0.0 0.0 0.0 37 0.2121753603818228 0.0 0.0 0.0 0.0 38 0.21971988906060752 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAACGG 20 7.858674E-4 44.000004 42 CGATTAC 25 4.444699E-5 44.0 30 CGTACAA 25 4.444699E-5 44.0 22 TCGGTAC 35 1.4472062E-7 44.0 16 CTGGGAT 32015 0.0 40.893955 5 CCATCTG 367955 0.0 40.887337 1 CATCTGG 365485 0.0 40.880745 2 TCTGGGA 98855 0.0 40.85762 4 ATCTGGG 358635 0.0 40.837116 3 TCTGGGG 210185 0.0 40.453793 4 CTGGGGG 101245 0.0 40.360317 5 CTGGGGC 47405 0.0 40.08311 5 TGGGATC 10275 0.0 40.06034 6 TGGGGGG 68600 0.0 39.904667 6 TGGGGGC 17715 0.0 39.839684 6 TGGGATT 11590 0.0 39.691113 6 CCGATTT 100 0.0 39.6 41 TCTGGGC 32810 0.0 39.440414 4 TGGGACT 7030 0.0 39.399715 6 TCGAATA 95 0.0 39.36842 40 >>END_MODULE