##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527084_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4798164 Sequences flagged as poor quality 0 Sequence length 50 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.86809537981611 33.0 31.0 34.0 30.0 34.0 2 32.26957019393251 34.0 31.0 34.0 30.0 34.0 3 32.32348665031041 34.0 31.0 34.0 30.0 34.0 4 35.9657231391007 37.0 35.0 37.0 35.0 37.0 5 36.07982907628835 37.0 35.0 37.0 35.0 37.0 6 36.20994655455712 37.0 36.0 37.0 35.0 37.0 7 36.344954653488294 37.0 36.0 37.0 35.0 37.0 8 36.51006655879207 37.0 37.0 37.0 35.0 37.0 9 38.52074501830283 39.0 39.0 39.0 37.0 39.0 10 37.80642762523332 39.0 38.0 39.0 35.0 39.0 11 37.4041076961938 39.0 37.0 39.0 35.0 39.0 12 36.22767354346371 38.0 35.0 39.0 32.0 39.0 13 35.77584300995131 38.0 35.0 39.0 31.0 39.0 14 36.7098100440085 39.0 35.0 40.0 31.0 40.0 15 37.050473889596105 40.0 35.0 40.0 32.0 40.0 16 36.69719188422905 39.0 35.0 40.0 31.0 40.0 17 37.008851719115896 39.0 35.0 40.0 32.0 40.0 18 37.052063455938566 39.0 35.0 40.0 32.0 40.0 19 36.64265248124074 39.0 35.0 40.0 31.0 40.0 20 36.797559233073315 39.0 35.0 40.0 31.0 40.0 21 37.02714871771786 40.0 35.0 40.0 32.0 40.0 22 36.94864389795764 40.0 35.0 40.0 32.0 40.0 23 37.03872793843645 40.0 35.0 40.0 32.0 40.0 24 36.767745537668155 39.0 35.0 40.0 32.0 40.0 25 36.231404345495484 37.0 35.0 40.0 31.0 40.0 26 35.62501323422876 36.0 35.0 40.0 31.0 40.0 27 35.43612681850808 35.0 35.0 40.0 30.0 40.0 28 35.20732263424093 35.0 35.0 40.0 30.0 40.0 29 35.29693149296273 35.0 35.0 40.0 30.0 40.0 30 34.99763055201948 35.0 35.0 40.0 27.0 40.0 31 34.785798693000075 35.0 35.0 40.0 25.0 40.0 32 33.657881431314145 35.0 34.0 40.0 19.0 40.0 33 33.74648678119381 35.0 33.0 40.0 21.0 40.0 34 33.53988233832774 35.0 33.0 40.0 20.0 40.0 35 33.37398700836403 35.0 33.0 40.0 18.0 40.0 36 32.79699005703015 35.0 33.0 40.0 15.0 40.0 37 32.04699943561746 35.0 31.0 40.0 12.0 40.0 38 31.201414124235853 35.0 28.0 40.0 10.0 40.0 39 30.443375007607077 35.0 24.0 40.0 9.0 40.0 40 29.612939866165476 35.0 21.0 40.0 8.0 40.0 41 28.894233085821995 35.0 17.0 39.0 8.0 40.0 42 28.363557602449603 35.0 15.0 39.0 8.0 40.0 43 27.90167801684144 35.0 14.0 39.0 8.0 40.0 44 27.44693407728456 35.0 10.0 38.0 8.0 40.0 45 27.175011108415635 35.0 10.0 38.0 8.0 40.0 46 26.66618127267013 34.0 10.0 37.0 8.0 40.0 47 26.437075723130764 34.0 10.0 36.0 8.0 40.0 48 26.2404242539438 33.0 10.0 35.0 8.0 40.0 49 25.94265848353662 33.0 10.0 35.0 8.0 40.0 50 25.502580987227613 33.0 10.0 35.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 5.0 11 18.0 12 45.0 13 53.0 14 125.0 15 490.0 16 1686.0 17 4316.0 18 8332.0 19 14252.0 20 21420.0 21 28192.0 22 36708.0 23 50458.0 24 69999.0 25 95826.0 26 128333.0 27 179816.0 28 250005.0 29 316946.0 30 318350.0 31 240127.0 32 187144.0 33 188420.0 34 270760.0 35 307204.0 36 526757.0 37 586325.0 38 841158.0 39 124890.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 99.31796828953742 0.5660290060948312 0.07244437664073175 0.043558327727022256 8 98.54315108862474 1.0130541598828218 0.26924882100736863 0.1745459304850772 9 96.44118041817661 2.043323237805127 0.7816323076910251 0.7338640363272285 10 62.592316561084616 25.6976001653966 4.363752468652593 7.346330804866194 11 47.40023475646101 33.58686781027076 8.75601584272651 10.256881590541715 12 37.85074874472819 39.152538345917314 10.164200306617282 12.832512602737214 13 24.801319838171434 46.71238832186645 12.17651168238518 16.309780157576938 14 21.169097179671223 57.34910269844883 8.994002706035058 12.487797415844893 15 25.951447261911014 54.60667872127756 8.26397346985222 11.177900546959211 16 22.032427403481833 54.37344367553922 15.904729392325898 7.689399528653043 17 27.677524152988518 54.309544234002836 9.22006834280779 8.79286327020085 18 24.83089365015452 52.49282850690389 12.114050290902938 10.562227552038655 19 19.39666922597894 53.21681376459829 17.89521992162002 9.491297087802751 20 20.289781674823953 56.93123453054126 9.93790541548809 12.841078379146689 21 17.288404481380795 52.031131074302586 18.092482874699574 12.587981569617046 22 17.032556619573654 56.57232641485368 11.909763817993715 14.48535314757895 23 17.562551009094314 59.48141830916992 12.107506121091317 10.848524560644446 24 14.57071913340186 56.9867766087195 18.75258953216272 9.68991472571592 25 17.35505497519468 57.811383687593846 12.179116845526746 12.654444491684735 26 18.715721263383244 57.783935688734275 12.630893816884958 10.869449230997523 27 14.878962036312224 57.41739965536817 16.24560977907383 11.45802852924577 28 19.302925035492745 61.591183627737614 12.088144548623182 7.017746788146466 29 23.820361288192736 57.1988577297483 11.4616340750337 7.51914690702527 30 20.31685453019113 58.29044192737055 12.957247813955505 8.435455728482811 31 25.84696979928156 54.95606236051957 10.6581809208689 8.538786919329977 32 22.58663938956651 54.64811123588106 14.385002263365736 8.380247111186694 33 26.721283390897018 53.45692644103036 10.668288953858184 9.153501214214437 34 24.920677992665528 51.17159396802611 11.792885778810396 12.114842260497975 35 25.402841586906995 53.3579510829559 11.944943941057454 9.294263389079656 36 26.981278672425535 50.93846312881344 12.172260056138139 9.907998142622887 37 23.078598397220272 51.87603008150617 14.6323468726788 10.413024648594755 38 25.353176756776136 51.30508252740006 12.934364060919968 10.407376654903834 39 22.895319959884656 50.11889964578118 12.728514490125805 14.25726590420836 40 23.953287132328114 49.289644955862286 15.81717506946407 10.93989284234553 41 23.63358151159485 50.177442871898506 13.601765175179507 12.58721044132714 42 24.5187742644895 50.29004844352964 14.044497020110192 11.146680271870657 43 25.766105535367277 47.83844403817793 15.451847831795662 10.943602594659124 44 25.015985281036663 52.52567440379279 12.183868663096968 10.274471652073585 45 24.64471827140548 52.531905954027415 12.662093250668379 10.161282523898725 46 24.00341047117189 53.49258591411215 12.5829588150801 9.921044799635862 47 26.237952683568132 50.7770055379516 12.013470152333268 10.971571626147002 48 25.205224331640185 51.62193288933017 11.847885983055185 11.32495679597446 49 24.952586030823458 52.29335637548029 11.489769836962637 11.264287756733617 50 22.306157105092698 54.586400131383584 11.729778306869045 11.37766445665467 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1465.0 1 1046.5 2 628.0 3 1814.5 4 3001.0 5 29130.5 6 55260.0 7 60514.5 8 65769.0 9 107982.5 10 150196.0 11 116070.0 12 81944.0 13 67866.0 14 53788.0 15 60292.0 16 66796.0 17 80766.5 18 94737.0 19 118596.0 20 142455.0 21 164468.0 22 186481.0 23 204129.5 24 221778.0 25 232592.0 26 243406.0 27 242306.0 28 241206.0 29 234419.5 30 227633.0 31 212014.5 32 196396.0 33 201423.0 34 206450.0 35 228579.0 36 250708.0 37 226899.0 38 203090.0 39 208252.0 40 213414.0 41 242282.0 42 271150.0 43 332741.5 44 394333.0 45 353751.5 46 313170.0 47 323489.0 48 333808.0 49 300070.5 50 266333.0 51 206253.0 52 146173.0 53 108597.0 54 71021.0 55 53893.5 56 36766.0 57 29182.5 58 21599.0 59 17140.0 60 12681.0 61 10708.0 62 8735.0 63 7033.5 64 5332.0 65 4637.5 66 3943.0 67 3113.5 68 2284.0 69 1788.5 70 1293.0 71 1644.5 72 1996.0 73 1258.5 74 521.0 75 365.5 76 210.0 77 157.0 78 104.0 79 77.5 80 51.0 81 38.5 82 26.0 83 24.0 84 22.0 85 14.5 86 7.0 87 6.0 88 5.0 89 2.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4798164.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.788682540840174 #Duplication Level Percentage of deduplicated Percentage of total 1 75.24471642140512 20.15706821088565 2 10.529245368209056 5.641292231271285 3 4.431525536521877 3.5614419230853303 4 2.393496944355584 2.5647451921925093 5 1.471484517992899 1.97095658081365 6 0.9924729911717152 1.5952226334514288 7 0.7380302195066997 1.3839600079138097 8 0.5361088536604259 1.1489319910434315 9 0.42228355543610435 1.0181178097915573 >10 2.6617860988383084 13.742003047197136 >50 0.31147376811723304 5.844920132938611 >100 0.22131988505715586 11.561803627367063 >500 0.026397859356656367 4.736450363517326 >1k 0.015886857606232353 8.191193073027879 >5k 0.00224662632815407 4.464331985120798 >10k+ 0.0015244964369616905 12.41756119038263 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATAAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 105512 2.19900778714525 No Hit AATAAAGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTAATAAAGGGA 73885 1.5398598297182007 No Hit AATAAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 43564 0.9079306167942571 No Hit AATAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 41587 0.8667273565472127 No Hit AATAAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 31964 0.6661714772567173 No Hit AATAAAGGGAACGCAGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAA 28881 0.6019177335330763 No Hit AATAAAGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 28191 0.5875372329916193 Illumina Single End Adapter 2 (97% over 34bp) AATAAAGGGAACGCAGAGTGCAGTGCTAATAAAGGGAACGCAGAGTGCAG 25667 0.5349337788370718 No Hit AATAAAGGGGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAAAAAAA 23941 0.4989616861782965 No Hit AATAAAGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 23124 0.481934339885006 Illumina Single End Adapter 2 (97% over 34bp) AATAAAGGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 22865 0.4765364418556765 No Hit AATAAAGGGGCAGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAAAA 20496 0.4271633899966737 No Hit AATAAAGGGGAGTGCAGTGCTAATAAAGGGGAGTGCAGTGCTAATAAAGG 18588 0.38739817980377494 No Hit AATAAAGGGACGCAGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAA 16669 0.34740371525441816 No Hit AATAAAGGGCGCAGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAAA 15972 0.3328773255770332 No Hit AATAAAGGGGCAGAGTGCAGTGCTAATAAAGGGGCAGAGTGCAGTGCTAA 15959 0.3326063886103101 No Hit AATAAAGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 14144 0.29477941979473815 Illumina Single End Adapter 2 (97% over 34bp) AATAAAGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA 13358 0.2783981539605566 Illumina Single End Adapter 2 (97% over 34bp) AATAAAGGGAGAGTGCAGTGCTAATAAAGGGAGAGTGCAGTGCTAATAAA 13346 0.27814805829896605 No Hit AATAAAGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 9847 0.2052243316401857 No Hit AATAAAGGGGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAAAAAAAAA 9780 0.20382796419630508 No Hit AATAAAGGGCAGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAAAAA 9750 0.20320272504232867 No Hit AATAAAGGGAACGCAGAGTGCAGTGCTAATAAAGGGGAAAAAAAAAAAAA 9488 0.1977423030976015 No Hit AATAAAGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 9211 0.19196926157588612 Illumina Single End Adapter 2 (97% over 34bp) AATAAAGGGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8831 0.1840495656255184 No Hit AATAAAGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 8690 0.18111094160182936 Illumina Single End Adapter 2 (100% over 34bp) AATAAAGGGAACGCAGAGTGCAGTGCTAATAAAGGGGGGAAAAAAAAAAA 8634 0.17994382851440677 No Hit AATAAAGGAGAGTGCAGTGCTAATAAAGGGGAGTGCAGTGCTAATAAAGG 8402 0.17510864572365595 No Hit AATAAAGGGGAGTGCAGTGCTAATAAAGGGGAAAAAAAAAAAAAAAAAAA 8042 0.16760577587593922 No Hit AATAAAGGGGAGTGCAGTGCTAATAAAGGGGGGAAAAAAAAAAAAAAAAA 7993 0.16658455192444444 No Hit AATAAAGGGAACGCAGAGTGCAGTGCTAATAAAGGGGGTAAAAAAAAAAA 7818 0.1629373235262488 No Hit AATAAAGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7559 0.15753942549691924 No Hit AATAAAGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7251 0.1511203035160949 No Hit AATAAAGGGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAAAAAAAA 7195 0.1499531904286723 No Hit AATAAAGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7185 0.14974477737734684 No Hit AATAAAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 7135 0.1487027121207195 Illumina Single End Adapter 2 (100% over 34bp) AATAAAGGGAGAGTGCAGTGCTAATAAAGGGGGAAAAAAAAAAAAAAAAA 7060 0.1471396142357785 No Hit AATAAAGGGGCAGAGTGCAGTGCTAATAAAGGGGGGAAAAAAAAAAAAAA 6883 0.1434507032273178 No Hit AATAAAGGGGCAGAGTGCAGTGCTAATAAAGGGGAAAAAAAAAAAAAAAA 6656 0.1387197269622297 No Hit AATAAAGGGGAGTGCAGTGCTAATAAAGGGGGTAAAAAAAAAAAAAAAAA 6593 0.1374067247388793 No Hit AATAAAGGGCGCAGAGTGCAGTGCTAATAAAGGGCGCAGAGTGCAGTGCT 6134 0.12784056568304045 No Hit AATAAAGGGGCAGAGTGCAGTGCTAATAAAGGGGGTAAAAAAAAAAAAAA 5615 0.11702392831924877 No Hit AATAAAGGGACGCAGAGTGCAGTGCTAATAAAGGGGAAAAAAAAAAAAAA 5482 0.11425203473662009 No Hit AATAAAGGGCGCAGAGTGCAGTGCTAATAAAGGGGAAAAAAAAAAAAAAA 5184 0.10804132580712122 No Hit AATAAAGGGACGCAGAGTGCAGTGCTAATAAAGGGGGGAAAAAAAAAAAA 5123 0.10677000619403589 No Hit AATAAAGGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAA 5112 0.10654075183757787 Illumina Single End Adapter 2 (100% over 34bp) AATAAAGGGACGCAGAGTGCAGTGCTAATAAAGGGGGTAAAAAAAAAAAA 5045 0.10514438439369726 No Hit AATAAAGGGCGCAGAGTGCAGTGCTAATAAAGGGGGTAAAAAAAAAAAAA 4971 0.1036021278138888 No Hit AATAAAGGGCGCAGAGTGCAGTGCTAATAAAGGGGGGAAAAAAAAAAAAA 4897 0.10205987123408036 No Hit AATAAAGGGAAACGCAGAGTGCAGTGCTAATAAAGGGAAACGCAGAGTGC 4877 0.10164304513142944 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.40202877600682263 0.0 0.0 0.0 0.0 7 0.4054675913536928 0.0 0.0 0.0 0.0 8 0.41909780491037824 0.0 0.0 0.0 0.0 9 0.47128443296227474 0.0 0.0 0.0 0.0 10 0.7884265731642354 0.0 0.0 0.0 0.0 11 1.148668532380302 0.0 0.0 0.0 0.0 12 1.5369628883047766 0.0 0.0 0.0 0.0 13 1.8796773099043718 0.0 0.0 0.0 0.0 14 2.2807265445699647 0.0 0.0 0.0 0.0 15 2.572963325138532 0.0 0.0 0.0 0.0 16 2.817056690850917 0.0 0.0 0.0 0.0 17 3.0268035857048656 0.0 0.0 0.0 0.0 18 3.21024875348154 0.0 0.0 0.0 0.0 19 3.3973203083512775 0.0 0.0 0.0 0.0 20 3.579494156514867 0.0 0.0 0.0 0.0 21 3.7448490714364913 0.0 0.0 0.0 0.0 22 3.931899785001096 0.0 0.0 0.0 0.0 23 4.154088939019175 0.0 0.0 0.0 0.0 24 4.35570772487143 0.0 0.0 0.0 0.0 25 4.560994580427013 0.0 0.0 0.0 0.0 26 4.779098838639113 0.0 0.0 0.0 0.0 27 5.017773465017036 0.0 0.0 0.0 0.0 28 5.3063838584925405 0.0 0.0 0.0 0.0 29 5.488682754486924 0.0 0.0 0.0 0.0 30 5.6992424602410425 0.0 0.0 0.0 0.0 31 5.835753008859222 0.0 0.0 0.0 0.0 32 5.962759922336961 0.0 0.0 0.0 0.0 33 6.0868490530961425 0.0 0.0 0.0 0.0 34 6.215294016628027 0.0 0.0 0.0 0.0 35 6.425186800617903 0.0 0.0 0.0 0.0 36 6.53008108935001 0.0 0.0 0.0 0.0 37 6.638539241259782 0.0 0.0 0.0 0.0 38 6.749894334582978 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATACTA 20 7.858983E-4 44.000004 9 GGTACGT 20 7.858983E-4 44.000004 9 TAGGTCC 40 8.3218765E-9 44.000004 39 CTATAAC 40 8.3218765E-9 44.000004 42 CGCGCAC 40 8.3218765E-9 44.000004 43 TAATTAC 20 7.858983E-4 44.000004 21 TTCGCCC 20 7.858983E-4 44.000004 19 TATCGTA 20 7.858983E-4 44.000004 35 TGATCGC 25 4.4449596E-5 44.0 18 CTTAACG 25 4.4449596E-5 44.0 19 CCTTACG 25 4.4449596E-5 44.0 44 ATGATTA 25 4.4449596E-5 44.0 17 CTATCTA 30 2.5294048E-6 44.0 17 TCACACG 25 4.4449596E-5 44.0 21 TTAGACT 45 4.802132E-10 44.0 37 ATAGCTA 30 2.5294048E-6 44.0 13 TTACTCA 30 2.5294048E-6 44.0 41 TTATAGA 50 2.7284841E-11 44.0 13 TACGCGC 25 4.4449596E-5 44.0 38 CCATACT 145 0.0 44.0 30 >>END_MODULE