SRR1527071_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527071_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6065247
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	105954	1.74690330006346	No Hit
GAATTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	48061	0.7923997159555085	No Hit
GAATTAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA	47826	0.7885251828985695	No Hit
GAATTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	19142	0.31560132670606816	No Hit
GAATTAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT	14837	0.2446231785778881	No Hit
GAATTAGGGGGGCTGATGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	12597	0.20769145922663992	No Hit
GAATTAGGGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGCACCCGACTACTC	11720	0.19323203160563782	No Hit
GAATTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATTGCTC	11673	0.19245712499425002	No Hit
GAATTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC	11557	0.19054458952784611	No Hit
GAATTAGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGACC	11156	0.18393315226898427	No Hit
GAATTAGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC	8884	0.14647383692700397	No Hit
GAATTAGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCT	7726	0.12738145701238549	No Hit
GAATTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAGGAGCACCCGACTGCTC	7461	0.12301230271413513	No Hit
GAATTAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG	7272	0.11989618889387357	No Hit
GAATTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTC	7166	0.11814852717457343	No Hit
GAATTAGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAG	6899	0.11374639812690233	No Hit
GAATTAGGGGGGGCTGGAGAGATGGCTTAGCGGTTAAAAGCACTGACTGCTC	6534	0.10772850635761412	No Hit
GAATTAGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTC	6472	0.10670628912557065	No Hit
GAATTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGC	6191	0.10207333683195424	No Hit

Adapter Content

Adapter graph

Kmer Content

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAATTAG	643675	43.217167	1
AATTAGG	640885	43.198235	2
ATTAGGG	634010	43.194336	3
TAGGGGG	165295	43.072388	5
TTAGGGG	380035	43.065952	4
TAGGGAG	54850	42.976665	5
TTAGGGC	62090	42.873573	4
TTAGGGA	159305	42.832367	4
TAGGGGC	81610	42.70261	5
TAGGGGA	78995	42.59928	5
TAGGGGT	56345	42.538467	5
TTAGGGT	36125	42.4537	4
TAGGGAT	44510	42.325993	5
TAGGGAA	32375	42.312897	5
TAGGGCA	29260	42.29768	5
AGGGGGG	105415	42.279938	6
TAGGGTG	15890	42.22215	5
AGGGATC	12725	42.0778	6
TAGGGAC	29135	41.610775	5
TAGGGCC	7730	41.447605	5

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content