##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527066_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1521218 Sequences flagged as poor quality 0 Sequence length 50 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.43527094735929 31.0 31.0 33.0 30.0 33.0 2 32.25193036106594 33.0 31.0 34.0 31.0 34.0 3 32.919625589494736 34.0 31.0 34.0 31.0 34.0 4 36.440203179294485 37.0 37.0 37.0 35.0 37.0 5 33.30416942213411 35.0 33.0 35.0 30.0 35.0 6 34.981103957486695 35.0 35.0 36.0 33.0 37.0 7 35.999480679297776 37.0 35.0 37.0 35.0 37.0 8 36.534536798802016 37.0 37.0 37.0 35.0 37.0 9 38.66684525163389 39.0 39.0 39.0 38.0 39.0 10 37.99097828187676 39.0 38.0 39.0 35.0 39.0 11 37.450707919574974 39.0 37.0 39.0 35.0 39.0 12 36.93763878681425 39.0 37.0 39.0 33.0 39.0 13 36.79529692654176 39.0 37.0 39.0 33.0 39.0 14 37.619636370329566 39.0 37.0 40.0 33.0 40.0 15 37.579532322126084 39.0 37.0 40.0 33.0 40.0 16 37.43837832578894 39.0 37.0 40.0 33.0 40.0 17 37.432200381536376 39.0 37.0 40.0 33.0 40.0 18 37.33087565358811 39.0 36.0 40.0 33.0 40.0 19 37.26452684625083 39.0 36.0 40.0 33.0 40.0 20 36.956496701984854 39.0 36.0 40.0 31.0 40.0 21 37.06640402624739 39.0 36.0 40.0 32.0 40.0 22 36.81941970184418 39.0 36.0 40.0 31.0 40.0 23 36.805580791181804 38.0 35.0 40.0 31.0 40.0 24 36.80225450921564 38.0 35.0 40.0 31.0 40.0 25 36.71920066683408 38.0 35.0 40.0 31.0 40.0 26 36.48387213403996 38.0 35.0 40.0 31.0 40.0 27 36.30292502455269 38.0 35.0 40.0 30.0 40.0 28 36.08535594503878 38.0 35.0 40.0 30.0 40.0 29 36.57773244860368 39.0 35.0 40.0 31.0 40.0 30 36.736655758740696 39.0 35.0 40.0 31.0 40.0 31 36.77441760484033 39.0 35.0 40.0 31.0 40.0 32 36.02442779404398 39.0 35.0 40.0 30.0 40.0 33 36.158603171931965 38.0 35.0 40.0 30.0 40.0 34 36.121425068596345 38.0 35.0 40.0 30.0 40.0 35 36.03598826729634 38.0 35.0 40.0 30.0 40.0 36 35.816583159021256 38.0 35.0 40.0 29.0 40.0 37 35.73193125508639 38.0 34.0 40.0 29.0 40.0 38 35.48798725757912 38.0 34.0 40.0 29.0 40.0 39 35.446617776018954 37.0 34.0 40.0 29.0 40.0 40 35.25981088838023 37.0 34.0 40.0 28.0 40.0 41 35.12568349835461 37.0 34.0 40.0 28.0 40.0 42 35.0066387592048 37.0 34.0 40.0 28.0 40.0 43 34.82566864183832 36.0 33.0 40.0 28.0 40.0 44 34.676524337734634 36.0 33.0 40.0 27.0 40.0 45 34.54540835041394 36.0 33.0 40.0 27.0 40.0 46 34.21957010763743 35.0 33.0 39.0 26.0 40.0 47 34.095125090552436 35.0 33.0 39.0 26.0 40.0 48 33.934948837050314 35.0 33.0 39.0 26.0 40.0 49 33.58174436537038 35.0 33.0 39.0 24.0 40.0 50 33.11726129982685 35.0 32.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 6.0 14 12.0 15 32.0 16 86.0 17 166.0 18 311.0 19 566.0 20 1079.0 21 1748.0 22 2516.0 23 4045.0 24 5699.0 25 7750.0 26 10837.0 27 14794.0 28 19579.0 29 26008.0 30 33291.0 31 43425.0 32 57667.0 33 81495.0 34 124629.0 35 150794.0 36 223043.0 37 296750.0 38 379799.0 39 35089.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 0.0 0.0 0.0 100.0 7 99.31561419862241 0.5473245780683637 0.1158939744336446 0.021167248875572076 8 99.47252793485221 0.31560236599882463 0.0918343064570627 0.12003539269190872 9 96.46973675041973 1.7029774825172987 0.7609034339588409 1.066382333104131 10 52.90273977825664 34.35845486971624 4.688611362736965 8.050193989290161 11 32.52249184535024 22.197475969913583 25.243521967265703 20.036510217470475 12 26.89561916832433 17.83537928160198 28.61049501123442 26.658506538839273 13 23.132384707517264 17.974807029630206 31.999226935258456 26.893581327594074 14 25.83357546387171 17.372395015047154 31.2910444130953 25.502985107985836 15 25.3148463928247 18.678650923141852 28.779241371059243 27.22726131297421 16 29.787906795738678 19.093384380148013 25.354288471474835 25.764420352638478 17 30.116590784489798 19.590025887150954 24.068936865064707 26.224446463294544 18 29.173530683965087 19.28073425373615 24.187328837812856 27.358406224485904 19 28.95140604436708 19.147222817505448 24.56689310802265 27.334478030104826 20 29.353320825811945 19.416217793899364 24.95178205885021 26.27867932143848 21 31.00048776703931 18.753064978195106 25.534933191692446 24.711514063073142 22 30.848701501034036 18.370936972873054 24.71979689958967 26.060564626503236 23 28.237635894395147 20.974114163781916 25.053739832160808 25.73451010966213 24 28.034706399740205 19.88656458180221 24.685087870377554 27.39364114808003 25 28.225277376418106 20.321742182908693 24.31512117263929 27.137859268033903 26 27.9302506281151 21.24442387613084 24.283238825730436 26.54208667002362 27 28.341762982031504 18.721445578477248 23.41860272492174 29.51818871456951 28 28.88803577133586 20.098434280951185 24.363634929378957 26.649895018333993 29 29.83668349966934 19.928964816351108 23.144743225494306 27.08960845848524 30 28.21469375198032 19.438305357943435 24.823661040035024 27.523339850041218 31 29.15657059014553 20.897662267998406 22.65191445276088 27.29385268909519 32 30.350087890098592 21.294449579218757 23.861142847376247 24.494319683306404 33 30.3519285204356 20.163053553139658 23.26254356706271 26.222474359362035 34 29.619094699116104 22.55501841287705 24.206458245958174 23.619428642048675 35 28.275566026697028 23.548104216489683 24.562620216168884 23.613709540644404 36 29.78179327354791 22.688135428321253 22.717716987308854 24.812354310821984 37 30.580429629415377 23.0689486976883 21.555095982298393 24.795525690597927 38 30.583124838123137 23.33656320132946 22.756501697981484 23.323810262565917 39 29.47440800726786 22.909405489548508 22.19648991794733 25.419696585236306 40 27.865828566319884 23.7004821136747 23.524767653288354 24.908921666717067 41 26.766709307936143 22.79561509264287 23.615352960588158 26.82232263883283 42 27.44156327363994 20.576735221381814 24.01667611085328 27.96502539412497 43 26.95603128545678 20.28788773206733 25.654311216406857 27.101769766069033 44 26.973122852871846 20.471030450599454 26.02092533745985 26.534921359068854 45 27.51190164723268 20.862361607606537 25.463871713324455 26.161865031836328 46 27.781422518008597 21.444921109269018 24.02916610242582 26.744490270296566 47 26.912250578155135 21.856301989589923 24.71111964228664 26.520327789968302 48 28.600897438762885 20.058203360728047 25.778816711345776 25.56208248916329 49 26.695121935186144 22.504926972991377 24.888083101830244 25.91186798999223 50 24.85712107008989 23.011166052465853 25.87190001696009 26.259812860484168 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 3.0 12 6.0 13 114.5 14 223.0 15 817.0 16 1411.0 17 1914.5 18 2418.0 19 2513.5 20 2609.0 21 3170.5 22 3732.0 23 3889.0 24 4046.0 25 3956.5 26 3867.0 27 4409.0 28 4951.0 29 7337.5 30 9724.0 31 9838.5 32 9953.0 33 10990.0 34 12027.0 35 12285.0 36 12543.0 37 17660.0 38 22777.0 39 23833.5 40 24890.0 41 27388.0 42 29886.0 43 32863.5 44 35841.0 45 40561.5 46 45282.0 47 45380.5 48 45479.0 49 50036.5 50 54594.0 51 60917.0 52 67240.0 53 71767.0 54 76294.0 55 77671.0 56 79048.0 57 90699.0 58 102350.0 59 117725.0 60 133100.0 61 134818.0 62 136536.0 63 135514.5 64 134493.0 65 130560.5 66 126628.0 67 119266.5 68 111905.0 69 95441.0 70 78977.0 71 66290.0 72 53603.0 73 44454.5 74 35306.0 75 29736.5 76 24167.0 77 23275.5 78 22384.0 79 15513.5 80 8643.0 81 5611.0 82 2579.0 83 1844.5 84 1110.0 85 749.0 86 388.0 87 257.0 88 126.0 89 93.0 90 60.0 91 37.0 92 14.0 93 8.0 94 2.0 95 3.5 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1521218.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.344643012135055 #Duplication Level Percentage of deduplicated Percentage of total 1 67.68429063229067 5.648012428560626 2 10.661966089038053 1.779406016410246 3 4.512141424936514 1.1295662823408479 4 2.467979498493563 0.8237763150478756 5 1.4043864746063848 0.5859551890830577 6 0.8690175979367828 0.435098497562734 7 0.614054966055563 0.35868486370936675 8 0.4017253472482789 0.26818036893703034 9 0.3045554764972226 0.22872660558840094 >10 4.475227667142445 10.20836171548526 >50 3.4186784219847026 20.671338956972978 >100 3.0153282570789366 44.38533210768656 >500 0.12900673290508313 7.296524179006086 >1k 0.041641413785817975 6.1810364736089225 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGGGTCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 4921 0.3234907817288515 No Hit AGGGTCGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 4526 0.2975247466175131 No Hit AGGGTCGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 3750 0.24651299156333936 No Hit AGGGTCGGGATGACTCTGTATTTCGTTTTTGAGACTGTATTCCCCAGCAT 3544 0.23297121122679326 No Hit AGGGTCGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 3399 0.2234393755530108 No Hit AGGGTCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 3389 0.22278200757550856 No Hit AGGGTCGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGC 3385 0.2225190603845077 No Hit AGGGTCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 2810 0.18472040167812898 No Hit AGGGTCGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 2450 0.16105515448804839 No Hit AGGGTCGGGAGAGTGTGGCCAGGCGGCTCGGACCGAGCAGGGCTTTCCTT 2360 0.15513884269052824 No Hit AGGGTCGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG 2337 0.1536268963422731 No Hit AGGGTCGGGACATAGTATAAAAATTCGCCATTTTAAAAAGTGTAAAATTT 2301 0.15126037162326503 No Hit AGGGTCGGGATACAAAAACTACTCCAGTGTCTTGTACTGACTGCTGCCAA 2218 0.14580421740999647 No Hit AGGGTCGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCC 2045 0.13443175139920774 No Hit AGGGTCGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 1912 0.125688757298428 No Hit AGGGTCGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGA 1906 0.12529433651192662 No Hit AGGGTCGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTC 1869 0.12286207499516834 No Hit AGGGTCGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCG 1793 0.11786607836615133 No Hit AGGGTCGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCC 1559 0.10248366769259895 No Hit AGGGTCGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGC 1554 0.10215498370384783 No Hit AGGGTCGGGGCTCAGCCCGTAGCCCGTCGGTTCCGGAGTAAGTTCCAGGT 1545 0.10156335252409583 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 2.6294719100089536E-4 0.0 0.0 0.0 0.0 8 9.203151685031336E-4 0.0 0.0 0.0 0.0 9 0.0010517887640035814 0.0 0.0 0.0 0.0 10 0.005521891011018802 0.0 0.0 0.0 0.0 11 0.008151362921027755 0.0 0.0 0.0 0.0 12 0.01097804522428738 0.0 0.0 0.0 0.0 13 0.014199148314048348 0.0 0.0 0.0 0.0 14 0.019983986516068045 0.0 0.0 0.0 0.0 15 0.02760945505509401 0.0 0.0 0.0 0.0 16 0.034183134830116396 0.0 0.0 0.0 0.0 17 0.03839028988613072 0.0 0.0 0.0 0.0 18 0.04292612893089617 0.0 0.0 0.0 0.0 19 0.048645230335165636 0.0 0.0 0.0 0.0 20 0.051734859829426154 0.0 0.0 0.0 0.0 21 0.05594201488544048 0.0 0.0 0.0 0.0 22 0.06028064353695525 0.0 0.0 0.0 0.0 23 0.0648164825817207 0.0 0.0 0.0 0.0 24 0.06915511123323548 0.0 0.0 0.0 0.0 25 0.07237621432299644 0.0 0.0 0.0 0.0 26 0.07566305421050763 0.0 0.0 0.0 0.0 27 0.08039610364852375 0.0 0.0 0.0 0.0 28 0.08512915308653987 0.0 0.0 0.0 0.0 29 0.08854746656955151 0.0 0.0 0.0 0.0 30 0.09354346319856852 0.0 0.0 0.0 0.0 31 0.10084024774884336 0.0 0.0 0.0 0.0 32 0.10669082274861329 0.0 0.0 0.0 0.0 33 0.11089797780462761 0.0 0.0 0.0 0.0 34 0.11595971123139484 0.0 0.0 0.0 0.0 35 0.12667480926468133 0.0 0.0 0.0 0.0 36 0.13561501375871177 0.0 0.0 0.0 0.0 37 0.1414655887584817 0.0 0.0 0.0 0.0 38 0.14685600617400005 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTGA 30 2.5282588E-6 44.000004 11 CCTTACG 20 7.857286E-4 44.0 29 CTCGTAA 20 7.857286E-4 44.0 34 CAACGTC 40 8.3164196E-9 44.0 14 CGACGTA 20 7.857286E-4 44.0 16 ACGTTAT 20 7.857286E-4 44.0 16 TAGACGT 20 7.857286E-4 44.0 16 GACGTTA 20 7.857286E-4 44.0 15 TAGCGAT 45 4.802132E-10 44.0 26 AAGCGTA 25 4.443521E-5 44.0 15 TAACGCG 20 7.857286E-4 44.0 34 GCGCATA 40 8.3164196E-9 44.0 9 ATCACGA 25 4.443521E-5 44.0 31 GTCCGAT 40 8.3164196E-9 44.0 44 AATTCGG 20 7.857286E-4 44.0 22 AATTCGC 165 0.0 44.0 22 CATACGC 20 7.857286E-4 44.0 15 CGTAACT 25 4.443521E-5 44.0 19 CGTAAAC 25 4.443521E-5 44.0 12 CCGGTTA 20 7.857286E-4 44.0 24 >>END_MODULE