##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527063_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2435517 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80127217342355 31.0 31.0 33.0 31.0 33.0 2 32.64840606737707 34.0 31.0 34.0 31.0 34.0 3 33.160829097066454 34.0 34.0 34.0 31.0 34.0 4 33.318837027210236 35.0 33.0 35.0 32.0 35.0 5 35.0309884923817 35.0 35.0 35.0 35.0 37.0 6 35.84978014934817 37.0 35.0 37.0 35.0 37.0 7 36.142402619238545 37.0 35.0 37.0 35.0 37.0 8 36.61081569128854 37.0 37.0 37.0 35.0 37.0 9 38.747593632070725 39.0 39.0 39.0 39.0 39.0 10 38.135219750057175 39.0 39.0 39.0 37.0 39.0 11 37.90118894674108 39.0 38.0 39.0 35.0 39.0 12 37.64300228657817 39.0 37.0 39.0 35.0 39.0 13 37.526188074236394 39.0 37.0 39.0 35.0 39.0 14 38.35258181322487 40.0 38.0 40.0 35.0 40.0 15 38.29688809398579 40.0 38.0 40.0 35.0 40.0 16 38.145916041645364 40.0 38.0 40.0 35.0 40.0 17 38.27251667715725 40.0 38.0 40.0 35.0 40.0 18 38.24929409238367 40.0 38.0 40.0 35.0 40.0 19 38.238321473428435 40.0 38.0 40.0 34.0 40.0 20 37.97711081466481 40.0 38.0 40.0 34.0 40.0 21 38.173497043954114 40.0 38.0 40.0 34.0 40.0 22 38.01907069423042 40.0 38.0 40.0 34.0 40.0 23 38.08847115417384 40.0 38.0 40.0 34.0 40.0 24 38.15163720885545 40.0 38.0 40.0 34.0 40.0 25 38.09907095700831 40.0 38.0 40.0 34.0 40.0 26 37.97209052533815 40.0 38.0 40.0 34.0 40.0 27 37.82964191997017 40.0 38.0 40.0 34.0 40.0 28 37.763309802395135 40.0 37.0 40.0 34.0 40.0 29 38.03601822528851 40.0 38.0 40.0 34.0 40.0 30 38.06804222676335 40.0 38.0 40.0 34.0 40.0 31 38.04010154722796 40.0 38.0 40.0 34.0 40.0 32 37.329037736135696 40.0 37.0 40.0 33.0 40.0 33 37.567054962047074 40.0 37.0 40.0 33.0 40.0 34 37.597709233809496 40.0 37.0 40.0 33.0 40.0 35 37.6692086320892 40.0 37.0 40.0 33.0 40.0 36 37.495086669483314 40.0 37.0 40.0 33.0 40.0 37 37.52846931472866 40.0 37.0 40.0 33.0 40.0 38 37.35282282981396 40.0 37.0 40.0 33.0 40.0 39 37.40196352560873 40.0 37.0 40.0 33.0 40.0 40 37.33917890944715 40.0 36.0 40.0 33.0 40.0 41 37.26467727386013 40.0 36.0 40.0 33.0 40.0 42 37.177197285011765 40.0 36.0 40.0 33.0 40.0 43 37.11703757354188 40.0 36.0 40.0 33.0 40.0 44 37.00730686749466 40.0 35.0 40.0 33.0 40.0 45 36.92159529167729 40.0 35.0 40.0 32.0 40.0 46 36.642612636249304 40.0 35.0 40.0 31.0 40.0 47 36.647560251067844 39.0 35.0 40.0 31.0 40.0 48 36.579483124116976 39.0 35.0 40.0 31.0 40.0 49 36.34165312744686 39.0 35.0 40.0 31.0 40.0 50 35.89883544233113 38.0 35.0 40.0 30.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 5.0 14 7.0 15 12.0 16 35.0 17 84.0 18 161.0 19 361.0 20 661.0 21 1074.0 22 1719.0 23 2760.0 24 4078.0 25 6073.0 26 8539.0 27 12551.0 28 16665.0 29 22734.0 30 30345.0 31 38636.0 32 49497.0 33 68931.0 34 123443.0 35 137158.0 36 212303.0 37 366553.0 38 1044570.0 39 286560.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 100.0 0.0 6 0.0 0.0 100.0 0.0 7 99.71238139581862 0.12112418020485999 0.13734250263907005 0.02915192133744088 8 99.53369243573336 0.23629479900982006 0.11751098432078282 0.11250178093603945 9 97.68287390315896 1.0624027670511025 0.4860159054525179 0.76870742433742 10 39.15238530463963 47.65103261443053 4.247886588350646 8.948695492579194 11 28.079910754061665 22.345563590810492 32.62629659329005 16.948229061837793 12 26.990121604571023 18.33586051749998 28.846811580457043 25.827206297471957 13 23.87957053882194 18.66589311427512 32.54951618075341 24.905020166149527 14 25.662559530481623 22.008345661311335 30.07940408545701 22.24969072275004 15 26.167216241972447 23.18234691032746 29.599177505227843 21.051259342472257 16 28.842828853175735 25.70062126439684 26.121599643935966 19.33495023849146 17 27.4785189345835 23.2016857201161 25.8021192215041 23.517676123796303 18 25.160284243550752 23.402341268814794 28.232034512590136 23.20533997504431 19 25.6592337479065 24.256903154443187 27.99861384666993 22.08524925098039 20 25.81805013062935 25.462643044577394 26.911657771224757 21.807649053568504 21 25.418586690218138 24.102890679884396 29.351221937683047 21.127300692214426 22 25.295286380674 23.239131568369263 29.520385199528477 21.945196851428257 23 23.348594980039145 25.8854690811027 29.12428860073652 21.64164733812164 24 24.075668533621403 24.68666816942768 28.549503041859285 22.68816025509163 25 24.193056340809775 26.948816206168956 27.015249739583012 21.842877713438256 26 24.51196193662372 26.699423572079358 27.092194388296203 21.69642010300072 27 22.139200834976723 25.219039735711146 27.758664792731892 24.883094636580243 28 23.64569822341622 25.965862689523416 27.242265194617815 23.146173892442548 29 25.244783756385196 25.764509137074388 27.175954838336175 21.814752268204245 30 24.351954841620895 25.001303624651356 27.793113330763035 22.85362820296471 31 25.139138835820074 25.875984441906997 26.582076823935125 22.402799898337808 32 26.341142352937798 25.42564884580974 27.130379299343836 21.10282950190863 33 25.3205376928184 26.18318821014183 27.362198662542696 21.13407543449707 34 23.41494639536493 27.18621959937048 28.773685422848622 20.62514858241597 35 23.63350368730746 28.920717859904077 27.551973564545023 19.89380488824344 36 23.15241486715141 27.573570621761213 27.412578109699094 21.861436401388286 37 24.363081842582087 28.11908108216859 25.942500093409326 21.575336981839996 38 23.43186272154947 28.049855533753203 26.773247733438115 21.74503401125921 39 24.801920906320916 26.630403318884653 26.160441499689803 22.407234275104628 40 23.299200949942044 27.718878578962908 26.02334535131555 22.958575119779496 41 22.442093403577147 28.567158430838298 26.58092717069928 22.409820994885273 42 22.085002896715565 27.775950650313668 26.87408874583918 23.264957707131586 43 22.880603994962875 27.74918015353619 26.46013146284752 22.910084388653416 44 22.93250262675235 27.646984192678598 26.719378267530058 22.701134913039 45 23.21268954394488 27.49280748194326 25.715361461242107 23.579141512869754 46 22.65748914912111 28.606492995121773 25.709161545577388 23.026856310179728 47 22.523143956704057 28.52215771846388 27.143189721114652 21.811508603717403 48 22.24841789238178 28.10885738017842 27.052408174527216 22.590316552912583 49 23.582672590665553 28.181449770213057 25.949931780398167 22.28594585872322 50 22.273956617835143 28.90043469210028 26.19238543602857 22.633223254036 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 45.5 6 91.0 7 79.0 8 67.0 9 107.0 10 147.0 11 2046.0 12 3945.0 13 9305.5 14 14666.0 15 18102.0 16 21538.0 17 18600.5 18 15663.0 19 15248.0 20 14833.0 21 14475.5 22 14118.0 23 15718.5 24 17319.0 25 18372.0 26 19425.0 27 24907.0 28 30389.0 29 32825.0 30 35261.0 31 40395.0 32 45529.0 33 50937.5 34 56346.0 35 61375.5 36 66405.0 37 73621.0 38 80837.0 39 84870.0 40 88903.0 41 96269.5 42 103636.0 43 110069.5 44 116503.0 45 120075.0 46 123647.0 47 129573.0 48 135499.0 49 140535.5 50 145572.0 51 147274.0 52 148976.0 53 158054.0 54 167132.0 55 166012.0 56 164892.0 57 167977.0 58 171062.0 59 166260.0 60 161458.0 61 151267.5 62 141077.0 63 128761.0 64 116445.0 65 99631.5 66 82818.0 67 69451.5 68 56085.0 69 42697.0 70 29309.0 71 23272.5 72 17236.0 73 16232.5 74 15229.0 75 11023.5 76 6818.0 77 4858.5 78 2899.0 79 2310.0 80 1721.0 81 1776.5 82 1832.0 83 985.0 84 138.0 85 78.5 86 19.0 87 16.0 88 13.0 89 9.5 90 6.0 91 7.5 92 9.0 93 6.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2435517.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 7.0667521586930775 #Duplication Level Percentage of deduplicated Percentage of total 1 66.46379316491982 4.696831538231273 2 10.950936015576621 1.5477510145557172 3 4.710592392034255 0.9986576686539378 4 2.48830049607229 0.7033681160838365 5 1.4383583845996857 0.5082261109672059 6 0.8492698031554073 0.36009475288567916 7 0.5541572836583142 0.27412645263835184 8 0.4023335466033405 0.22745531671790387 9 0.29676373001606565 0.18874401567415577 >10 4.116569959080367 7.940914590333005 >50 3.521779913979053 18.266839231437114 >100 4.025152189966033 52.538185583355116 >500 0.14303807116921485 6.8221812835638165 >1k 0.03773770388294179 4.409818478200886 >5k 0.0012173452865465095 0.5168058467020116 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGGTTTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 6522 0.2677870858630837 No Hit GGGTTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 5493 0.22553732944586305 No Hit GGGTTTGGGAGCTGAACCCACCTCACCCACCCTCTCCTTCGCAGGCAGGG 4628 0.19002125626714986 No Hit GGGTTTGGGGACTGGAGTTCAGATTTCTTCCAACGAAAGTTTTCTGTCTC 4196 0.1722837491998619 No Hit GGGTTTGGGAGCTTCTTTGGGTCTGTGGATTGTACCATAGTTATCCTGCA 3910 0.16054086257661104 No Hit GGGTTTGGGATCTTGACTTGCAAAGTACGGTGTAGAGACCTACTGTGTGC 3670 0.15068669198367327 No Hit GGGTTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3515 0.14432254014240098 No Hit GGGTTTGGGGGGGGCTGGTGAAATGGCTCAGTGGGTAAGAGCACCCGACT 2919 0.11985134983660553 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 8.211808827448135E-5 0.0 0.0 0.0 0.0 8 1.642361765489627E-4 0.0 0.0 0.0 0.0 9 4.105904413724068E-4 0.0 0.0 0.0 0.0 10 0.011455473314290148 0.0 0.0 0.0 0.0 11 0.01831233368520934 0.0 0.0 0.0 0.0 12 0.023937422732011313 0.0 0.0 0.0 0.0 13 0.02964462986708777 0.0 0.0 0.0 0.0 14 0.04036104038690758 0.0 0.0 0.0 0.0 15 0.052432399363256346 0.0 0.0 0.0 0.0 16 0.06721365525266298 0.0 0.0 0.0 0.0 17 0.07431686988840562 0.0 0.0 0.0 0.0 18 0.08006513606761932 0.0 0.0 0.0 0.0 19 0.08991930666055709 0.0 0.0 0.0 0.0 20 0.09735099364939764 0.0 0.0 0.0 0.0 21 0.10387938166721891 0.0 0.0 0.0 0.0 22 0.11213224953880428 0.0 0.0 0.0 0.0 23 0.11853746042421383 0.0 0.0 0.0 0.0 24 0.1270777416047599 0.0 0.0 0.0 0.0 25 0.13393460197567908 0.0 0.0 0.0 0.0 26 0.14087358043487275 0.0 0.0 0.0 0.0 27 0.14801785411475263 0.0 0.0 0.0 0.0 28 0.16103357110625793 0.0 0.0 0.0 0.0 29 0.16862949427164745 0.0 0.0 0.0 0.0 30 0.1779498972908011 0.0 0.0 0.0 0.0 31 0.18649017847134716 0.0 0.0 0.0 0.0 32 0.19597481766704974 0.0 0.0 0.0 0.0 33 0.20398133127381168 0.0 0.0 0.0 0.0 34 0.21190572679229913 0.0 0.0 0.0 0.0 35 0.2318604222429981 0.0 0.0 0.0 0.0 36 0.2421662423214455 0.0 0.0 0.0 0.0 37 0.2511581729875012 0.0 0.0 0.0 0.0 38 0.2605606940949293 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCCC 30 2.5288882E-6 44.000004 40 CGAATAT 60 0.0 44.000004 32 CGGTATG 30 2.5288882E-6 44.000004 23 CGCGTAA 30 2.5288882E-6 44.000004 14 TCGTTAC 50 2.7284841E-11 44.0 26 CGACGTA 40 8.3182385E-9 44.0 42 CCGATAG 25 4.4443113E-5 44.0 21 CGTGATA 40 8.3182385E-9 44.0 15 CTATACG 25 4.4443113E-5 44.0 37 ACCGATA 25 4.4443113E-5 44.0 38 CGCGCAA 20 7.8582205E-4 44.0 41 CGCGAAT 25 4.4443113E-5 44.0 13 CGCGAAA 80 0.0 44.0 12 TACGCCG 20 7.8582205E-4 44.0 28 ACTACGG 25 4.4443113E-5 44.0 40 CGTCGAA 45 4.802132E-10 44.0 25 ATCGGTC 20 7.8582205E-4 44.0 16 GCGTCGT 20 7.8582205E-4 44.0 44 TATCGGG 25 4.4443113E-5 44.0 41 CGATATT 35 1.4469697E-7 44.0 31 >>END_MODULE