SRR1527051_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527051_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1143552
Sequences flagged as poor quality	0
Sequence length	50
%GC	62

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GCCCTCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT	5473	0.4785965133199015	No Hit
GCCCTCGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC	4617	0.4037420248488919	No Hit
GCCCTCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC	3986	0.3485630736512201	No Hit
GCCCTCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG	3660	0.32005540631296175	No Hit
GCCCTCGGGATCAGTGGTAGCTTAACAACCTCTGGATTGATTGTGTATAA	3633	0.31769434184016115	No Hit
GCCCTCGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGC	3443	0.3010794436982315	No Hit
GCCCTCGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC	3422	0.2992430602193866	No Hit
GCCCTCCACCATATCACACATTCGAGGAACCAACCTATGTAAAAGTAAAA	3160	0.27633199014998877	No Hit
GCCCTCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	3078	0.26916134989926127	No Hit
GCCCTCGGGGCTCTTTCGAGTCTTGGCTCCAAGATGACCAAAAAAAGAAG	2965	0.2592798578464294	No Hit
GCCCTCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG	2797	0.24458879001567047	No Hit
GCCCTCGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA	2779	0.24301474703380344	No Hit
GCCCTCGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGT	2669	0.2333955954779494	No Hit
GCCCTCGGGCTCTTTCCCACAACTGTGCTGTGTCCTTGTTGCTCTGCTTC	2591	0.22657474255652565	No Hit
GCCCTCGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC	2282	0.19955367136780836	No Hit
GCCCTCGGGGACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTG	2176	0.1902843071412581	No Hit
GCCCTCGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG	2150	0.18801068950078353	No Hit
GCCCTCGGAGCTGCCCTCGGGGGAGTGTGTGTGACTAACCCTTACTATTT	2095	0.1832011137228565	No Hit
GCCCTCGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTT	2090	0.18276387956122678	No Hit
GCCCTCGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGGCGT	2041	0.17847898477725543	No Hit
GCCCTCGGGGTTGCACTGCGCTATTTCCCGCGCGGGCTAACCTCGTTCCC	1913	0.16728579023953435	No Hit
GCCCTCGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCA	1858	0.16247621446160734	No Hit
GCCCTCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT	1822	0.15932812849787328	No Hit
GCCCTCGGGGTCCTAAATATCCAAAGACTGTACTGGCCAGTGTCCTTTAC	1785	0.1560925957018133	No Hit
GCCCTCGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAA	1769	0.15469344638459817	No Hit
GCCCTCGGGGAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGAT	1746	0.15268216924110142	No Hit
GCCCTCGGGCTCGCTACGTCCAACGCGCCATCAGCTGGAGGCGAGTAGAT	1721	0.15049599843295275	No Hit
GCCCTCGGGATGTTGATAATGCTCGGGATATTTTTCAATGTCCATTCTGC	1632	0.14271323035594358	No Hit
GCCCTCGGGATCTGTCGTAGAAACCTCGACATTGAGCGCCCAACCTACAC	1620	0.14166386836803224	No Hit
GCCCTCGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCG	1606	0.140439612715469	No Hit
GCCCTCGGGAGCCTCGCTTGTCAAGGAAAGTATACCCCAAGTGGCCAGTC	1603	0.14017727221849116	No Hit
GCCCTCGGGGAGCGCCCAACCTACACTAACCTAAACAGGTTGATAGGTCA	1579	0.13807854824266846	No Hit
GCCCTCGGGGGATATTTATGGCCTGAATACTGCTCTCCTACAGAGAATTC	1415	0.12373726774121334	No Hit
GCCCTCGGGGCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCAT	1384	0.12102641593910901	No Hit
GCCCTCGGGGGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC	1354	0.11840301096933065	No Hit
GCCCTCGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG	1350	0.11805322364002686	No Hit
GCCCTCGGGGAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAAC	1343	0.11744109581374525	No Hit
GCCCTCGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCC	1274	0.11140726438325498	No Hit
GCCCTCGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCG	1265	0.11062024289232146	No Hit
GCCCTCCCCTTTCCTTTGATCTTGACCACTCATGGAAGCAGGACCAGTAA	1244	0.10878385941347661	No Hit
GCCCTCGGGAGAGTGTGGCCAGGCGGCTCGGACCGAGCAGGGCTTTCCTT	1240	0.10843407208417281	No Hit
GCCCTCGGGGATCGTGGTGTGCCCAGCTCTTCCAAGGACTGCTGCGCTTC	1237	0.108171731587195	No Hit
GCCCTCGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAG	1232	0.10773449742556525	No Hit
GCCCTCGGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAG	1211	0.10589811394672038	No Hit
GCCCTCGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAA	1161	0.1015257723304231	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.8564644E-4	44.000004	11
CTAGACG	20	7.8564644E-4	44.000004	42
CGGGTAT	40	8.312782E-9	44.000004	6
CTATGCG	20	7.8564644E-4	44.000004	30
TGATACG	40	8.312782E-9	44.000004	14
GATACGG	40	8.312782E-9	44.000004	15
ATCTACG	40	8.312782E-9	44.000004	26
ACGCATT	20	7.8564644E-4	44.000004	13
GCGAATA	20	7.8564644E-4	44.000004	38
CTATACA	20	7.8564644E-4	44.000004	38
ATTACCT	20	7.8564644E-4	44.000004	20
ATTCGAT	20	7.8564644E-4	44.000004	28
TACGGTG	40	8.312782E-9	44.000004	29
CAATTAA	20	7.8564644E-4	44.000004	36
TTATAGC	40	8.312782E-9	44.000004	36
CGTTAAC	65	0.0	44.000004	12
GTTACGA	20	7.8564644E-4	44.000004	44
CCGTAAA	20	7.8564644E-4	44.000004	30
GCCGAAT	20	7.8564644E-4	44.000004	43
TCTACGA	20	7.8564644E-4	44.000004	25

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content