SRR1527019_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527019_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	241499
Sequences flagged as poor quality	0
Sequence length	56
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	1398	0.578884384614429	No Hit
GTAATGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	1285	0.5320933005933771	No Hit
GTAATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1267	0.5246398535811743	No Hit
GTAATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	1081	0.44762090112174374	No Hit
GTAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCC	683	0.2828169060741452	No Hit
GTAATGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	612	0.2534171984149003	No Hit
GTAATGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	597	0.2472059925713978	No Hit
GTAATGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	511	0.21159507906865038	No Hit
GTAATGGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAA	422	0.17474192439720246	No Hit
GTAATGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	395	0.16356175387889804	No Hit
GTAATGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	369	0.15279566375016046	No Hit
GTAATGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	358	0.1482407794649253	No Hit
GTAATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	357	0.14782669907535848	No Hit
GTAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCC	324	0.13416204621965308	No Hit
GTAATGGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAACACAGATTGTTCTTCC	305	0.1262945188178833	No Hit
GTAATGGGGGAGTGCAGTGCTGTAATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA	269	0.1113876247934774	No Hit
GTAATGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	265	0.10973130323521008	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAAGCA	15	0.00801044	50.639065	49
TAACCGA	15	0.00801044	50.639065	50
ACAGATA	15	0.00801044	50.639065	49
CGATACA	15	0.008239745	50.27887	46
CGTGTTA	15	0.008253383	50.257843	44
ACAGGTA	15	0.008260209	50.247337	43
CCGATTG	20	4.07673E-4	50.247334	43
CCCGATT	20	4.07673E-4	50.247334	42
ACCCGAT	20	4.080939E-4	50.236835	41
GTCTACG	15	0.008287555	50.205345	40
CGGTAAG	15	0.008287555	50.205345	38
CTTCGTC	15	0.008294401	50.194862	37
CCGGTAA	15	0.008294401	50.194862	37
TACCATC	15	0.008308107	50.173904	36
CGCCCAA	15	0.008376891	50.069374	33
GTTAGAC	15	0.008383792	50.058945	32
CTAAGGC	15	0.008383792	50.058945	32
TACGGAC	15	0.008383792	50.058945	32
CATAAAC	15	0.008390698	50.04852	31
TTGTTAG	20	4.165842E-4	50.027687	30