SRR1527018_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527018_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	393754
Sequences flagged as poor quality	0
Sequence length	64
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCC	1358	0.34488538529132406	No Hit
CCTAGAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT	1092	0.27733051600745645	No Hit
CCTAGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTC	949	0.2410134246255276	No Hit
CCTAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCC	670	0.17015700157966648	No Hit
CCTAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCCGAAGGTCC	581	0.1475540565937108	No Hit
CCTAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCCGAAGGTCC	430	0.10920523981978594	No Hit
CCTAGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTC	429	0.10895127414578644	No Hit
CCTAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTCTTCCGAAGGT	411	0.10437989201379543	No Hit
CCTAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCCGAATGTCC	403	0.1023481666217994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGTA	15	0.0046889293	57.98752	39
ATAGATT	15	0.0047007613	57.950623	31
GTTCATA	15	0.004712615	57.913773	11
TATAACT	20	2.0235627E-4	57.913773	13
ATCATAC	15	0.004729248	57.862263	23
GCATATA	20	2.0324845E-4	57.862263	24
GACTAAT	20	2.0388763E-4	57.825523	9
CTAGAGG	39410	0.0	57.508606	2
TAGAGGG	39320	0.0	57.381466	3
CCTAGAG	39615	0.0	57.328953	1
AGAGGGG	29350	0.0	57.192112	4
GAGGGGG	17200	0.0	55.87813	5
GAGGGGA	6895	0.0	55.866188	5
GAGGGAT	1755	0.0	55.82391	5
AGGGATT	490	0.0	55.76982	6
AGAGGGA	7120	0.0	55.529835	4
AGGGGGG	9655	0.0	55.192192	6
AGGGGAG	3685	0.0	54.356213	6
AGGGTAC	355	0.0	54.048424	6
GAGGGGT	2275	0.0	53.79825	5