SRR1526951_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526951_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	111826
Sequences flagged as poor quality	0
Sequence length	56
%GC	55

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
ATTTGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	6945	6.210541376781786	No Hit
ATTTGCGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	590	0.5276053869404252	No Hit
ATTTGCGGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCC	579	0.5177686763364513	No Hit
ATTTGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	527	0.4712678625722104	No Hit
ATTTGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	386	0.3451791175576342	No Hit
ATTTGCGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	322	0.2879473467708762	No Hit
ATTTGCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	320	0.28615885393379	No Hit
ATTTGCGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	300	0.2682739255629281	No Hit
ATTTGCGGGGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCC	282	0.2521774900291524	No Hit
ATTTGCGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGT	261	0.2333983152397475	No Hit
ATTTGCGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	214	0.19136873356822207	No Hit
ATTTGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCC	188	0.16811832668610163	No Hit
ATTTGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	182	0.16275284817484306	No Hit
ATTTGCGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	182	0.16275284817484306	No Hit
ATTTGCGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	178	0.1591758625006707	No Hit
ATTTGCGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTCCTG	177	0.1582816160821276	No Hit
ATTTGCGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	172	0.1538103839894121	No Hit
ATTTGCGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAA	167	0.14933915189669666	No Hit
ATTTGCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	164	0.14665641264106738	No Hit
ATTTGCGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	161	0.1439736733854381	No Hit
ATTTGCGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	159	0.1421851805483519	No Hit
ATTTGCGGGACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGG	148	0.13234846994437788	No Hit
ATTTGCGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGC	146	0.1305599771072917	No Hit
ATTTGCGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGATGGCT	144	0.1287714842702055	No Hit
ATTTGCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	141	0.1260887450145762	No Hit
ATTTGCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	138	0.12340600575894693	No Hit
ATTTGCGGGACACTTTTTTTTTTCAAGCTCTTGTAGCCACTTCATGCCCAGTGGCT	135	0.12072326650331765	No Hit
ATTTGCGGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCTTTGCAGCTCC	133	0.11893477366623145	No Hit
ATTTGCGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCA	132	0.11804052724768838	No Hit
ATTTGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTC	128	0.114463541573516	No Hit
ATTTGCGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGCA	127	0.1135692951549729	No Hit
ATTTGCGGGTACCTGGTTGATCCTGCCAGTAGCGTATGCCGTCTTCTGCTTGAAAA	125	0.11178080231788672	Illumina Single End Adapter 1 (95% over 21bp)
ATTTGCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	120	0.10730957022517125	No Hit
ATTTGCGGGAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAAT	116	0.10373258455099887	No Hit
ATTTGCGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC	113	0.10104984529536959	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACAA	15	0.007999541	50.638306	50
TATGACC	25	1.9250509E-5	50.638306	50
CTATGAC	25	1.9302435E-5	50.61528	49
AGATTTT	15	0.008013946	50.615276	49
CCTTGAA	15	0.008013946	50.615276	48
ATAAGTC	15	0.008261802	50.226986	47
AATAAGT	15	0.008261802	50.226986	46
ACCTATG	25	2.0203111E-5	50.226982	47
TTAGACT	15	0.008276557	50.20433	45
TGAAATA	15	0.008276557	50.20433	43
CCTAAAC	25	2.0257157E-5	50.20433	42
ATGAAAT	15	0.008276557	50.20433	42
GATTCTG	15	0.008276557	50.20433	42
CGCGGTC	15	0.008291331	50.181694	41
CGATTCT	15	0.008291331	50.181694	41
TATCATG	15	0.008306125	50.15908	38
TATGCAA	20	4.102637E-4	50.15908	37
ATCCGAG	15	0.008306125	50.15908	40
CACTCGC	15	0.008306125	50.15908	36
ACTCGCG	15	0.008306125	50.15908	37

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content