SRR1526939_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526939_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49290
Sequences flagged as poor quality	0
Sequence length	56
%GC	51

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGCTTGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	517	1.0488942990464596	No Hit
CGCTTGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	416	0.843984581050923	No Hit
CGCTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	325	0.6593629539460337	No Hit
CGCTTGGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	324	0.657334144856969	No Hit
CGCTTGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	258	0.5234327449786975	No Hit
CGCTTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	257	0.5214039358896327	No Hit
CGCTTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAG	217	0.44025157232704404	No Hit
CGCTTGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	160	0.32460945425035503	No Hit
CGCTTGGGGAATTCTTTTCTTGGTCATGTGTGAGAAAGCACAGCATTGAGTTATAA	137	0.27794684520186647	No Hit
CGCTTGGGGGGTTCAGTGTTTTGGAGCTTGTGAATCTGTCTGCTAGCCTTTTCCCA	132	0.2678027997565429	No Hit
CGCTTGGGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGC	109	0.22114019070805438	No Hit
CGCTTGGGGGAGGACCACCGTGGCAGCTTGAGGGCGGCCTAGAGGCCTGTCCGGGG	108	0.21911138161898966	No Hit
CGCTTGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98	0.19882329072834246	No Hit
CGCTTGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCT	97	0.19679448163927774	No Hit
CGCTTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	94	0.1907080543720836	No Hit
CGCTTGGGGGTGCTCGCTTGGGGGTTCCAGTCCTGACTTCCTTAGTGATGAACAGC	90	0.18259281801582472	No Hit
CGCTTGGGGACTTGCATGCTACTTATTGAGACTTATCAGTCAGTTGAAGATTATTT	89	0.18056400892676	No Hit
CGCTTGGGGACCATCTAAGGTGATGTCATTGTTATCAAAGTGCCCGACACTGAGTC	86	0.17447758165956584	No Hit
CGCTTGGGGACTTCACTAGCACTTGAGATGGAAGCAGGTGGGTCAGAAGCTCCACC	83	0.16839115439237168	No Hit
CGCTTGGGGATTCTTGGCAGGTGGCATTCTAGAAATAAGGCCATGGCTACTATTGT	80	0.16230472712517752	No Hit
CGCTTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCCAGCAAGCGC	76	0.15418949076891864	No Hit
CGCTTGGGATCGCCAGCCCTCAATTCACAAAGATGTATAAGCCTCGTGTTCATGTA	76	0.15418949076891864	No Hit
CGCTTGGGGGGAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGCGG	75	0.15216068167985392	No Hit
CGCTTGGGGGGCCACGTGATCTCAGCACCATCCAGTTAAAAGGAGGTGCAGGGCCC	74	0.15013187259078922	No Hit
CGCTTGGGGATTGGCCGCCGCCGCTGTCGCTTAGCAAGAAGCCAGCCTTAGTCTTC	74	0.15013187259078922	No Hit
CGCTTGGGGTGTCCAGCCCACCTTGTCTCTGTCGCAGCATGGGGAAGGGCTGGGCT	73	0.14810306350172447	No Hit
CGCTTGGGGAGCATTAGAACATCTATGCATATGGTGATCTAAATGCACAAAATGTA	73	0.14810306350172447	No Hit
CGCTTGGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	73	0.14810306350172447	No Hit
CGCTTGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	71	0.14404544532359506	No Hit
CGCTTGGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	67	0.13593020896733618	No Hit
CGCTTGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64	0.12984378170014202	No Hit
CGCTTGGGGATGTAAACATCTATTTCTAAACTTATATAATGACCTGATTTTCTTTC	64	0.12984378170014202	No Hit
CGCTTGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGA	59	0.11969973625481842	No Hit
CGCTTGGAGGAGGAAGACGCAGTGGATTTCATCAGTGTGCCTGTACCAGAGTTTGC	53	0.10752688172043011	No Hit
CGCTTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCTAGCAAGCGC	53	0.10752688172043011	No Hit
CGCTTGGGGGAAAGGCAAGATGTTGAGGCGCAATCTGGATGAGCGAGATGCTCAAA	51	0.10346926354230068	No Hit
CGCTTGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	51	0.10346926354230068	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATTATT	20	3.859891E-4	50.72464	49
AGATTAT	20	3.859891E-4	50.72464	48
TACTATT	20	3.859891E-4	50.72464	48
ACTATTG	20	3.859891E-4	50.72464	49
TATACTT	15	0.007919059	50.724636	50
GCAAGGG	15	0.007919059	50.724636	49
GTCCGGG	15	0.007919059	50.724636	49
TTATACT	15	0.007919059	50.724636	49
GCCAGCG	15	0.007919059	50.724636	49
AAGCGCC	15	0.007919059	50.724636	50
GATTAAG	45	1.1277734E-10	50.724636	50
TAGGGGC	15	0.007919059	50.724636	50
CCTAGGG	15	0.007919059	50.724636	48
GCTCAAA	15	0.007919059	50.724636	50
AGGTGCA	20	4.0001806E-4	50.359715	44
TAGAGTT	20	4.0001806E-4	50.359715	44
CTCAAAG	45	1.2187229E-10	50.35971	44
GAGGTGC	20	4.0205484E-4	50.308006	43
GTAGAGT	20	4.0205484E-4	50.308006	43
TCGATCC	15	0.008181883	50.308006	43

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content