SRR1526935_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526935_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49529
Sequences flagged as poor quality	0
Sequence length	56
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GACACTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	438	0.8843303922954229	No Hit
GACACTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	321	0.6481051505178784	No Hit
GACACTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	224	0.45226029195017065	No Hit
GACACTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	211	0.4260130428637768	No Hit
GACACTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	202	0.40784187041935027	No Hit
GACACTGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAG	187	0.3775565830119728	No Hit
GACACTGGGGCAGCATTGGACATTAATACACAGGGGAAATGTCCAGAAAAGCACAT	123	0.24833935674049545	No Hit
GACACTGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	120	0.24228229925901995	No Hit
GACACTGGGGGATCATCACTAACAACAGCAACAGGAATAAAAAGTACAACCATGGC	94	0.1897878010862323	No Hit
GACACTGGGAACATTTTGGTTTTTCATCCTGGACATGATGCGCATTGTAAATTGCA	90	0.18171172444426498	No Hit
GACACTGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	89	0.17969270528377315	No Hit
GACACTGGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGC	83	0.16757859032082215	No Hit
GACACTGGGATGGCAAGGTTTGCGGATTTTATCCGGGGCATGCTGAAACTGATCCT	81	0.16354055199983847	No Hit
GACACTGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	80	0.16152153283934664	No Hit
GACACTGGGGCTCTTAGAACCTTCCTGCGGTCGTGCTTGCATCTCGCTGCTGCAGC	75	0.1514264370368875	No Hit
GACACTGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGCT	73	0.1473883987159038	No Hit
GACACTGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	72	0.145369379555412	No Hit
GACACTGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATC	71	0.14335036039492013	No Hit
GACACTGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	69	0.13931232207393648	No Hit
GACACTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	68	0.13729330291344463	No Hit
GACACTTGGGTGAAATTTCTTTGCTGATTTTTTGGTCAGAATTATCTATCTATTGA	66	0.13325526459246098	No Hit
GACACTGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	65	0.13123624543196916	No Hit
GACACTGGGATCTAATTCCACTTATAGGCCTATTAATCGCAGCTACAGGAAAATCA	62	0.12517918795049365	No Hit
GACACTGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTCACTATCACT	61	0.12316016879000181	No Hit
GACACTGGGACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCAT	60	0.12114114962950998	No Hit
GACACTGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	60	0.12114114962950998	No Hit
GACACTGGGGACGCCTGAGATAAATACCGCAAAGCAGGAGCTGGGGACTAGACCGC	59	0.11912213046901814	No Hit
GACACTGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53	0.10700801550606714	No Hit
GACACTGGGCCATCTCATCCCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAG	52	0.10498899634557532	No Hit
GACACTGGGGGTTCAGCCGGGATCGATGTTTGCTGGCATCGCCTCGCCCTGTCTTG	52	0.10498899634557532	No Hit
GACACTGGGGCTACCCCTGGTTCTGCTTTCATGCTGATAATGTACTGAGACTTCGG	51	0.10296997718508348	No Hit
GACACTGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	51	0.10296997718508348	No Hit
GACACTGGGGGTTTCTAGGTAGCCAAGGATGGCCTTTGAATTTCTGATCCTCCTGT	51	0.10296997718508348	No Hit
GACACTGGGGGCTTGTGTTTGCCAGCAGCTTGCGGCACCGGGAATGATGGACAGCC	50	0.10095095802459164	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGGTGC	15	0.008040999	50.529716	50
CAAGGTG	15	0.008040999	50.529716	49
TGAGTGG	15	0.008040999	50.529716	49
CTGAGTG	15	0.008073664	50.477997	48
TTAGAAA	15	0.008271728	50.16989	45
GTGTCTT	15	0.008271728	50.16989	37
GAAATGT	15	0.008271728	50.16989	36
ATGCGCA	15	0.008271728	50.16989	38
AGAAAAG	15	0.008271728	50.16989	45
GTCCAGA	15	0.008271728	50.16989	41
GTGACCT	15	0.008271728	50.16989	39
AAATGTC	15	0.008271728	50.16989	37
TGGCCAA	15	0.008271728	50.16989	45
TAGCAAG	55	0.0	50.169888	47
TGCCTAG	55	0.0	50.169888	43
CTAGCAA	55	0.0	50.169888	46
CCTAGCA	55	0.0	50.169888	45
TTGCCTA	50	7.2759576E-12	50.169888	42
CATGAGT	15	0.008305087	50.118904	35
AGGGCGC	15	0.008305087	50.118904	35

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content