SRR1526905_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526905_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	42190
Sequences flagged as poor quality	0
Sequence length	64
%GC	56

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTCGGTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAGCAAAGAG	1057	2.505333017302678	No Hit
GTCGGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT	555	1.3154776013273286	No Hit
GTCGGTGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAGCAAAGAGC	357	0.8461720786916331	No Hit
GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCC	172	0.40767954491585684	No Hit
GTCGGTGGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGCTTATCTGC	149	0.3531642569329225	No Hit
GTCGGTGGGAGCTCCTGTCTCCCAACTATATAGTAATCATTAGTAGACTGTTGCCTTGTGGGGT	123	0.2915382792130837	No Hit
GTCGGTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	116	0.27494666982697324	No Hit
GTCGGTGGGAGACTCAGCACCTTGCCCATGCCAGGCATTGCACTACTGCTGAGCTAACTCACGA	114	0.2702062100023702	No Hit
GTCGGTGGGAGAGTCACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAAGATAATAG	107	0.2536146006162598	No Hit
GTCGGTGGGGCGCCCTGGCCAACAGCCTCGCTTGTCAAGGAAAGTATACCCCAAGTGGCCAGTC	95	0.22517184166864188	No Hit
GTCGGTGGGGGTGATCTCAGCACCATCCAGTTAAAAGGAGGTGCAGGGCCCTGTGAGCGCTAGT	82	0.19435885280872245	No Hit
GTCGGTGGGGGCAGGCTCTGTGCGCCTACCAAGCAGAGCCAAACACCTGTGCCGCCGCACAGGA	82	0.19435885280872245	No Hit
GTCGGTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	82	0.19435885280872245	No Hit
GTCGGTGAGCTACTCTAGTATTAATAAATATTAGCCCACCAACAGCTACCATTACATTTATTAT	66	0.15643517421189854	No Hit
GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCT	65	0.15406494429959708	No Hit
GTCGGTGGGATTCCTGGAGTTCCTGTCCAGCCCGTGGTGCTACGCTACCCAAACAAATTGGACA	63	0.14932448447499408	No Hit
GTCGGTGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGTGTTTGAAC	61	0.14458402465039108	No Hit
GTCGGTGGGGAGGAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGCGGACAGCG	61	0.14458402465039108	No Hit
GTCGGTGGGTGTCTTTGATCCACTTGGACTTGAGTTTTGTGCAGGGTGATAAATATGGATCTAT	60	0.1422137947380896	No Hit
GTCGGTGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGCTTATCTGCC	58	0.13747333491348662	No Hit
GTCGGTGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCCCC	56	0.13273287508888362	No Hit
GTCGGTGGGGATGCTCTGTCCTCTCCACACAGGCCTCTTGCTCCTAACAGCTCAGCCCTGGCCT	56	0.13273287508888362	No Hit
GTCGGTGGGAACCTTCTCTAACCCACGATATCAAGACCCAGAAACTGAAGAAAAATCTTGTTTT	55	0.13036264517658214	No Hit
GTCGGTGGGGTGCCAGCCTTGAGTGGGAGACATACAGGGCAGTCAGATCCTGCTCCAAATTCTC	54	0.12799241526428062	No Hit
GTCGGTGGGGACAGGAGCCACTGCCAGGATCAAGAGTCACCGCTTCGCAAGCACTGCCTGGCTC	53	0.12562218535197914	No Hit
GTCGGTGGGATCACCAAGGGTGTGCAGTACCTGAATGAGATCAAGGACAGTGTGGTGGCTGGCT	53	0.12562218535197914	No Hit
GTCGGTGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGG	53	0.12562218535197914	No Hit
GTCGGTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGGGAGCAAAGAG	50	0.11851149561507467	No Hit
GTCGGTGGGATCGGTTGGCTGCAAAGTCCTTGATTCAGACTAAGGATTTTGGATCCCAGGAGGC	49	0.11614126570277317	No Hit
GTCGGTGGGGAGACTAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAGCA	48	0.11377103579047168	No Hit
GTCGGTGGGGATGACACATGAGCAAAAGCCCACTTCGCCATCATATTCGTAGGAGTAAACATAA	46	0.10903057596586868	No Hit
GTCGGTGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAACACCTCCT	45	0.10666034605356721	No Hit
GTCGGTGAGGGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGCTTATCTGCCCGTGCTCTG	44	0.10429011614126571	No Hit
GTCGGTGGGGAAACACTAGAATTTATTTATATGTATTGATGTTGTAGGTCTAGATGGAAAAAAA	44	0.10429011614126571	No Hit
GTCGGTGGGACCCACTGCTGGTGGTTGTTTCCTGCCTTACCCGGGACCCCTTCAGCAGCAGTTT	43	0.10191988622896421	No Hit
GTCGGTGGGGAGATTCTCGGACCTCGGCGACCTCCGGGGATCCGAGTTTGCAGACTTCTTGTGC	43	0.10191988622896421	No Hit
GTCGGTGGGATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAAATTCCACCTCACA	43	0.10191988622896421	No Hit
GTCGGTGGGAGTGAAGGGGCCAGGCAGGGCATTTGTGCCAAGTATAAGAATCAGCAGACACCCA	43	0.10191988622896421	No Hit
GTCGGTGGGGAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCCCCGTCATGGCTTTTGCCCC	43	0.10191988622896421	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCTAAC	20	1.968403E-4	58.11667	52
TAACTCA	20	1.968403E-4	58.11667	55
TAGACTG	20	1.968403E-4	58.11667	44
CCGTGCT	15	0.004619023	58.116665	55
TAATTGC	15	0.004619023	58.116665	52
CAAAGCA	15	0.004619023	58.116665	47
AAAGCAG	15	0.004619023	58.116665	48
CGCACAG	15	0.004619023	58.116665	56
CGCTGTT	15	0.004619023	58.116665	55
TGCACTA	20	1.9800407E-4	58.047565	39
GTAGACT	20	1.9800407E-4	58.047565	43
TTGCATT	25	8.484532E-6	58.047565	39
ATTAGTA	20	1.9800407E-4	58.047565	39
AGTAGAC	20	1.9800407E-4	58.047565	42
CACTACT	20	1.9800407E-4	58.047565	41
CTGCCCG	20	1.9800407E-4	58.047565	51
GCACTAC	20	1.9800407E-4	58.047565	40
TTAGTAG	20	1.9800407E-4	58.047565	40
TTGCCTT	20	1.9800407E-4	58.047565	51
AGGACCA	15	0.0046408693	58.04756	40

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content