SRR1526903_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526903_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38940
Sequences flagged as poor quality	0
Sequence length	56
%GC	57

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTCGGTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	834	2.14175654853621	No Hit
GTCGGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	510	1.3097072419106317	No Hit
GTCGGTGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAG	315	0.8089368258859784	No Hit
GTCGGTGGGGGTGATCTCAGCACCATCCAGTTAAAAGGAGGTGCAGGGCCCTGTGA	130	0.3338469440164355	No Hit
GTCGGTGGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGC	127	0.3261427837699024	No Hit
GTCGGTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	123	0.31587057010785824	No Hit
GTCGGTGGGAGCTCCTGTCTCCCAACTATATAGTAATCATTAGTAGACTGTTGCCT	117	0.30046224961479195	No Hit
GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	115	0.2953261427837699	No Hit
GTCGGTGGGGAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCCCCGTCATGGCT	110	0.2824858757062147	No Hit
GTCGGTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	104	0.26707755521314847	No Hit
GTCGGTGGGGCACCCGCTTCACCGACGACTACCAGCTTTTCGAGGAGCTCGGCAAG	99	0.2542372881355932	No Hit
GTCGGTGGGGGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCCCCGTCATGGCTTTTG	95	0.24396507447354907	No Hit
GTCGGTGGGAGAGTCACTCACTCCATCACCGGGAAATATGCAAGCATAGTTTACAA	94	0.241397021058038	No Hit
GTCGGTGGGAGACTCAGCACCTTGCCCATGCCAGGCATTGCACTACTGCTGAGCTA	91	0.23369286081150487	No Hit
GTCGGTGGGGCGCCCTGGCCAACAGCCTCGCTTGTCAAGGAAAGTATACCCCAAGT	76	0.19517205957883924	No Hit
GTCGGTGGGAACCTTCTCTAACCCACGATATCAAGACCCAGAAACTGAAGAAAAAT	72	0.18489984591679506	No Hit
GTCGGTGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	68	0.1746276322547509	No Hit
GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCCAGCAAGCGC	67	0.17205957883923986	No Hit
GTCGGTGGGATTCCTGGAGTTCCTGTCCAGCCCGTGGTGCTACGCTACCCAAACAA	66	0.1694915254237288	No Hit
GTCGGTGGGGGCAGGCTCTGTGCGCCTACCAAGCAGAGCCAAACACCTGTGCCGCC	66	0.1694915254237288	No Hit
GTCGGTGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGCT	60	0.15408320493066258	No Hit
GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	55	0.14124293785310735	No Hit
GTCGGTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGGGA	55	0.14124293785310735	No Hit
GTCGGTGGGATCGGTTGGCTGCAAAGTCCTTGATTCAGACTAAGGATTTTGGATCC	51	0.13097072419106318	No Hit
GTCGGTGGGCTCTAGTTTGTTGTTGATGGGTTGTTTTCTGAAACAGGGTCTCATCA	51	0.13097072419106318	No Hit
GTCGGTGGGACCCACTGCTGGTGGTTGTTTCCTGCCTTACCCGGGACCCCTTCAGC	51	0.13097072419106318	No Hit
GTCGGTGGGATCACCAAGGGTGTGCAGTACCTGAATGAGATCAAGGACAGTGTGGT	50	0.12840267077555212	No Hit
GTCGGTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	50	0.12840267077555212	No Hit
GTCGGTGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	49	0.1258346173600411	No Hit
GTCGGTGGGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGT	49	0.1258346173600411	No Hit
GTCGGTGGGGAGATTCTCGGACCTCGGCGACCTCCGGGGATCCGAGTTTGCAGACT	48	0.12326656394453005	No Hit
GTCGGTGGGGATGCTCTGTCCTCTCCACACAGGCCTCTTGCTCCTAACAGCTCAGC	45	0.11556240369799693	No Hit
GTCGGTGGGGACAGGAGCCACTGCCAGGATCAAGAGTCACCGCTTCGCAAGCACTG	45	0.11556240369799693	No Hit
GTCGGTGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	45	0.11556240369799693	No Hit
GTCGGTGGGGAGGAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGC	45	0.11556240369799693	No Hit
GTCGGTGGGGTCTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGC	44	0.11299435028248588	No Hit
GTCGGTGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTA	43	0.11042629686697483	No Hit
GTCGGTGGGGAGACTAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAA	43	0.11042629686697483	No Hit
GTCGGTGGGGAACTACCAGCCTCCCACTGTGGTACCCGGTGGTGACCTGGCCAAGG	42	0.10785824345146379	No Hit
GTCGGTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGG	42	0.10785824345146379	No Hit
GTCGGTGGGGAGCCCTTTCTCCTCTACTCGCAAAGATGACGCTTTGCCGTCCTGGC	41	0.10529019003595276	No Hit
GTCGGTGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGT	40	0.1027221366204417	No Hit
GTCGGTGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGA	39	0.10015408320493066	No Hit
GTCGGTGGGATGAAGGAAATCCTAAGGTTCAATGTTCAAGAGAACGGGTTTTTATC	39	0.10015408320493066	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTGTGA	15	0.008025708	50.53325	50
TTCCTCA	15	0.008025708	50.53325	50
TCTTGTG	15	0.008025708	50.53325	49
CTTGTGC	15	0.008025708	50.53325	50
GCATATT	15	0.008025708	50.53325	49
GCCCTGT	15	0.008025708	50.53325	48
TGCGCCC	15	0.008234912	50.20596	42
TATAAGC	15	0.008234912	50.20596	34
ACGAGAT	15	0.008234912	50.20596	39
TCAGACT	25	2.0006148E-5	50.20596	35
GAATCTC	15	0.008234912	50.20596	39
AGAGAAC	15	0.008234912	50.20596	34
ATATGCT	100	0.0	50.20596	34
CAGACTA	15	0.008234912	50.20596	36
GCCGCAT	15	0.008234912	50.20596	40
GCGTAGA	30	9.929936E-7	50.20596	38
CAGCGTA	30	9.929936E-7	50.20596	36
AAGCCTG	15	0.008234912	50.20596	37
TTCAGAC	20	4.050458E-4	50.20596	34
GCCTGCG	15	0.008234912	50.20596	39

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content