SRR1526899_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526899_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17842
Sequences flagged as poor quality	0
Sequence length	56
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTGTGTGGGATGGCTCGTGTGCAGCGTAGATCTATCACATGTGGAAGTGTGTATAC	178	0.997646003811232	No Hit
CTGTGTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	101	0.5660800358704181	No Hit
CTGTGTGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT	94	0.5268467660576168	No Hit
CTGTGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	93	0.5212420132272166	No Hit
CTGTGTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	88	0.4932182490752158	No Hit
CTGTGTGGGATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCT	83	0.4651944849232149	No Hit
CTGTGTGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	81	0.45398497926241455	No Hit
CTGTGTGGGAAGCAAAAGCGATTGCCTTAGTAGCGGCGAGCGAAACGGCAGGGGGG	71	0.39793745095841276	No Hit
CTGTGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	70	0.3923326981280125	No Hit
CTGTGTGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58	0.3250756641632104	No Hit
CTGTGTGGGGAACAAAATAATCCCATTAATATCTTTCTTGGATTCTCAGCAGTTTT	55	0.3082614056720099	No Hit
CTGTGTGGGATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCA	49	0.2746328886896088	No Hit
CTGTGTGGGGAGTGCAGTGCTCTGTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAA	40	0.22419011321600715	No Hit
CTGTGTGGGGTTGGCCAGACTTAACTCTGCTCCCTTGACCACAGAGATGAGATTCT	39	0.218585360385607	No Hit
CTGTGTTTGTGGGAGATGGTTCTTTTTTTGATTCTAATAAATGAGCTGTGTTTGTT	38	0.2129806075552068	No Hit
CTGTGTGGGGGAAGAACGTCTGCTCAGATGGACCCTGAGATGTCTCCACGGACTTT	36	0.20177110189440645	No Hit
CTGTGTGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	35	0.19616634906400626	No Hit
CTGTGTGGGGAGTGCAGTGCTCTGTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAA	34	0.19056159623360608	No Hit
CTGTGTGGGGTCTCCATTGGTAGCGTAACGAGCTCCTTCCATAGCCTTGGAAATAG	33	0.18495684340320592	No Hit
CTGTGTGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	32	0.17935209057280574	No Hit
CTGTGTGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACA	32	0.17935209057280574	No Hit
CTGTGTGGGATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTGAGACAGG	31	0.17374733774240556	No Hit
CTGTGTGGGGAAACTTTTTTTTCAGTTCTTGAGACAGGGTCTCACTATGTCACCTT	31	0.17374733774240556	No Hit
CTGTGTGGGCCATCTCATCCCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAG	30	0.16814258491200537	No Hit
CTGTGTGGGGTGCAGTGCTCTGTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA	28	0.15693307925120503	No Hit
CTGTGTGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28	0.15693307925120503	No Hit
CTGTGTGGGGTTAAAAGGAACAGAATACAAAGTCTCTGTAATTCATAGAGCTAAAT	28	0.15693307925120503	No Hit
CTGTGTGGGCTAAGGGGAGAGGCTCAGAGGAAAATGGCAAAGCCTTCCTCTGGACC	26	0.14572357359040466	No Hit
CTGTGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATC	25	0.14011882076000448	No Hit
CTGTGTGGGGTGTGGGCAGGGGTGTGGGGGATAACCTGTGAGTGCAGCCGGGTTGG	25	0.14011882076000448	No Hit
CTGTGTGGGGACTACCCAGATGCTTACACCACATGAAACACTGTCTCTTCTATAGG	23	0.1289093150992041	No Hit
CTGTGTGGGGCTCTTCCGGCGCGGGGAAGCTCTTCCGGTATTAGTTTCAAGCGGAC	22	0.12330456226880394	No Hit
CTGTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	21	0.11769980943840377	No Hit
CTGTGTGGGGGTGGGCGGAACACATCGTCTCTCCGCCATGGCGGCCCTGCGTGCTC	21	0.11769980943840377	No Hit
CTGTGTGGGCACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGC	21	0.11769980943840377	No Hit
CTGTGTGGGGGCCTTAGACTGGAATTGGCTGTCTCGGGGCTCTGGCCGCCGGCCTC	21	0.11769980943840377	No Hit
CTGTGTGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20	0.11209505660800358	No Hit
CTGTGTGGGGCTCTTAGAACCTTCCTGCGGTCGTGCTTGCATCTCGCTGCTGCAGC	20	0.11209505660800358	No Hit
CTGTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19	0.1064903037776034	No Hit
CTGTGTTTGAAGCTTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTA	19	0.1064903037776034	No Hit
CTGTGTGGGATCTCTGCCCAGGACTCTCAGTGGGAGCTCCAGCTGACGAGGTAAGG	19	0.1064903037776034	No Hit
CTGTGTGGGCGGGTCGTGCCTTTGCATCGCTGAAGGAACTTTTTGTCTTTTAAGGA	19	0.1064903037776034	No Hit
CTGTGTGGGGGTCTGAGTCCTGGCCGAGGAACTTCTGTTGGTGTTTGGGGCCGCAG	19	0.1064903037776034	No Hit
CTGTGTGGGAGTGCAGTGCTCTGTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA	18	0.10088555094720322	No Hit
CTGTGTGGGACTCTTGTCAGTTATTAAACAAACAAACAGAAAAAAATTGTTTTGAA	18	0.10088555094720322	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCTTCC	15	0.008123607	50.264206	34
AAACTCT	15	0.008123607	50.264206	34
TAGCCTT	15	0.008123607	50.264206	42
CGCCATG	15	0.008123607	50.264206	34
GCGGCCC	15	0.008123607	50.264206	41
ACGTACT	15	0.008123607	50.264206	41
GAGCTCC	15	0.008123607	50.264206	30
ACTCTAC	15	0.008123607	50.264206	36
TCTACGT	20	3.9672165E-4	50.264206	38
CTCTACG	15	0.008123607	50.264206	37
AACTCTA	15	0.008123607	50.264206	35
CTTGGAA	15	0.008123607	50.264206	46
TACGTAC	15	0.008123607	50.264206	40
TTCCATA	15	0.008123607	50.264206	37
CGTACTG	15	0.008123607	50.264206	42
CCTTCCA	15	0.008123607	50.264206	35
CTACGTA	15	0.008123607	50.264206	39
CATAGCC	15	0.008123607	50.264206	40
TCTCCGC	15	0.008123607	50.264206	30
CATGGCG	15	0.008123607	50.264206	37

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content