SRR1526887_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526887_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	71222
Sequences flagged as poor quality	0
Sequence length	56
%GC	57

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGGCAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	1040	1.4602229648142429	No Hit
CGGCAGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	468	0.6571003341664092	No Hit
CGGCAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	343	0.48159276628008196	No Hit
CGGCAGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	312	0.4380668894442728	No Hit
CGGCAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	258	0.36224762011737943	No Hit
CGGCAGGGGATCTTCCTGACCTATTGTAGAACACAGGGGCACTGCATTCTGGGAAT	207	0.29064053241975796	No Hit
CGGCAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	187	0.26255932155794554	No Hit
CGGCAGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	156	0.2190334447221364	No Hit
CGGCAGGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGC	150	0.2106090814635927	No Hit
CGGCAGGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	144	0.202184718205049	No Hit
CGGCAGGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACA	143	0.20078065766195838	No Hit
CGGCAGGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAA	142	0.1993765971188678	No Hit
CGGCAGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	134	0.18814411277414284	No Hit
CGGCAGGGGGAGTCTGAAACCATCTGAGCAGAGTCTCTCTTCAGTCCCCGGGAAGA	129	0.18112381005868972	No Hit
CGGCAGGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACAGCTG	123	0.172699446800146	No Hit
CGGCAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCCAGCAAGCGC	119	0.16708320462778353	No Hit
CGGCAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	117	0.1642750835416023	No Hit
CGGCAGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCA	116	0.1628710229985117	No Hit
CGGCAGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	115	0.16146696245542108	No Hit
CGGCAGGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	114	0.16006290191233047	No Hit
CGGCAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	107	0.15023447811069612	No Hit
CGGCAGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	97	0.13619387267978994	No Hit
CGGCAGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	96	0.13478981213669936	No Hit
CGGCAGGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	94	0.1319816910505181	No Hit
CGGCAGGGGACTGGCTCCAAGCTCCCTACCTGTATAAACTCTATCAGCATTACCAC	88	0.12355732779197438	No Hit
CGGCAGGGGGTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGACT	88	0.12355732779197438	No Hit
CGGCAGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	88	0.12355732779197438	No Hit
CGGCAGGGGTTTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	87	0.12215326724888376	No Hit
CGGCAGGGGTCACCTCCTCCCTACATCAGCTCTGGTCTTTCTTCCTCTTTATCCAC	84	0.1179410856196119	No Hit
CGGCAGGGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	84	0.1179410856196119	No Hit
CGGCAGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	81	0.11372890399034005	No Hit
CGGCAGGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	80	0.11232484344724945	No Hit
CGGCAGGGGGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	76	0.10670860127488697	No Hit
CGGCAGGGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCTTTGCAGCTCC	76	0.10670860127488697	No Hit
CGGCAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCC	76	0.10670860127488697	No Hit
CGGCAGGGGGAGCGCCCAACCTACACTAACCTAAACAGGTTGATGGGTCAAATTGT	74	0.10390048018870575	No Hit
CGGCAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCTAGCAAGCGC	74	0.10390048018870575	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGTATC	15	0.007917677	50.750717	49
GAACGGT	15	0.007917677	50.750717	49
AGTATCC	15	0.007917677	50.750717	50
AAAAGGA	15	0.007917677	50.750717	48
ATTAAGC	25	1.8927614E-5	50.750717	50
TACCCGG	20	3.8620416E-4	50.750717	50
AACGGTA	15	0.007917677	50.750717	50
TTGTGCA	15	0.007917677	50.750717	50
GGTACCC	15	0.007917677	50.750717	48
GCGCCCC	20	4.043044E-4	50.28247	45
CAGCATT	15	0.008213466	50.282467	45
CGCCCCT	15	0.008213466	50.282467	46
AATTACT	15	0.008213466	50.282467	42
ATTACTC	15	0.008213466	50.282467	43
TCAGCAT	15	0.008213466	50.282467	44
TCTCGAT	15	0.008213466	50.282467	43
TATCAGC	15	0.008213466	50.282467	42
AGCATTA	15	0.008213466	50.282467	46
ATTCTCG	15	0.008213466	50.282467	41
CGATCCA	15	0.008213466	50.282467	46

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content